mRNA_L-elsbetiae_contig980.18753.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig980.18753.1
Unique NamemRNA_L-elsbetiae_contig980.18753.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig980.18753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig980contigL-elsbetiae_contig980:8324..8657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817041.526862-UTR-L-elsbetiae_contig980:8323..83481622817041.526862-UTR-L-elsbetiae_contig980:8323..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig980 8324..8348 +
1691684003.1184075-UTR-L-elsbetiae_contig980:8323..83481691684003.1184075-UTR-L-elsbetiae_contig980:8323..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig980 8324..8348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817041.5403347-CDS-L-elsbetiae_contig980:8348..86571622817041.5403347-CDS-L-elsbetiae_contig980:8348..8657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 8349..8657 +
1691684003.1303647-CDS-L-elsbetiae_contig980:8348..86571691684003.1303647-CDS-L-elsbetiae_contig980:8348..8657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 8349..8657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig980.18753.1prot_L-elsbetiae_contig980.18753.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig980 8349..8657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig980.18753.1

>prot_L-elsbetiae_contig980.18753.1 ID=prot_L-elsbetiae_contig980.18753.1|Name=mRNA_L-elsbetiae_contig980.18753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MGDAGENNSFPSQIAMESATDAGEKVADDVSPPAEASDEARAANTAIGDD
ATVGERQLDSETPDAADNEGGDGLDSAKANEDIDAEKDRENETDGIGNTA
ENG
back to top

mRNA from alignment at L-elsbetiae_contig980:8324..8657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig980.18753.1 ID=mRNA_L-elsbetiae_contig980.18753.1|Name=mRNA_L-elsbetiae_contig980.18753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=334bp|location=Sequence derived from alignment at L-elsbetiae_contig980:8324..8657+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACGCAACTAACTGGTGTTACTATGGGTGATGCCGGGGAAAACAATT
CGTTTCCCAGCCAGATTGCTATGGAAAGTGCCACCGATGCAGGGGAGAAA
GTAGCAGACGACGTGAGCCCGCCAGCGGAGGCGAGCGACGAGGCGCGGGC
GGCGAACACGGCGATCGGGGACGACGCAACGGTCGGCGAAAGACAGCTTG
ACAGCGAGACGCCCGATGCGGCAGATAACGAGGGTGGAGACGGGTTAGAT
AGCGCTAAGGCGAATGAAGACATTGACGCGGAAAAGGATCGCGAGAACGA
AACAGATGGGATTGGCAACACAGCTGAGAATGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig980:8324..8657+

>mRNA_L-elsbetiae_contig980.18753.1 ID=mRNA_L-elsbetiae_contig980.18753.1|Name=mRNA_L-elsbetiae_contig980.18753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig980:8324..8657+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGATGCCGGGGAAAACAATTCGTTTCCCAGCCAGATTGCTATGGA
AAGTGCCACCGATGCAGGGGAGAAAGTAGCAGACGACGTGAGCCCGCCAG
CGGAGGCGAGCGACGAGGCGCGGGCGGCGAACACGGCGATCGGGGACGAC
GCAACGGTCGGCGAAAGACAGCTTGACAGCGAGACGCCCGATGCGGCAGA
TAACGAGGGTGGAGACGGGTTAGATAGCGCTAAGGCGAATGAAGACATTG
ACGCGGAAAAGGATCGCGAGAACGAAACAGATGGGATTGGCAACACAGCT
GAGAATGGTATGGGTGATGCCGGGGAAAACAATTCGTTTCCCAGCCAGAT
TGCTATGGAAAGTGCCACCGATGCAGGGGAGAAAGTAGCAGACGACGTGA
GCCCGCCAGCGGAGGCGAGCGACGAGGCGCGGGCGGCGAACACGGCGATC
GGGGACGACGCAACGGTCGGCGAAAGACAGCTTGACAGCGAGACGCCCGA
TGCGGCAGATAACGAGGGTGGAGACGGGTTAGATAGCGCTAAGGCGAATG
AAGACATTGACGCGGAAAAGGATCGCGAGAACGAAACAGATGGGATTGGC
AACACAGCTGAGAATGGT
back to top