mRNA_L-elsbetiae_contig9786.18742.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9786.18742.1
Unique NamemRNA_L-elsbetiae_contig9786.18742.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9786.18742.1 vs. uniprot
Match: D7FJ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ03_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.520e-15
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 FRSDVEVAFSSASLATIACNTLAVDAELQPDKIIRTLRVEGSSLRA 138
            +  D EV F SASLATIAC TLAVDAELQP+KIIRTLRVEGSSL A
Sbjct:    5 YHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLA 50
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BLAST of mRNA_L-elsbetiae_contig9786.18742.1 vs. uniprot
Match: K3WQ75_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ75_GLOUD)

HSP 1 Score: 48.1 bits (113), Expect = 5.320e-6
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 FRSDVEVAFSSASLATIACNTLAVDAELQPDKIIRTLRVEGSSL 132
            +  D+ +AF  A  A  A  TL VDAELQPDKI RTL VEG++L
Sbjct:    7 YECDISLAFPEAVDAAYALETLRVDAELQPDKITRTLAVEGTNL 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9786.18742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ03_ECTSI9.520e-1580.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WQ75_GLOUD5.320e-656.82Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9786contigL-elsbetiae_contig9786:6564..6704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue8.3e-11
Seed eggNOG ortholog2880.D7FJ03
KEGG koko:K15902
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Transcription factor Pcc1
EggNOG OGs2CYNW@1,2S5DA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Ec32 ortholog descriptionCTAG/Pcc1 family
Ec32 orthologEc-07_004940.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.2659223-CDS-L-elsbetiae_contig9786:6563..67041622817040.2659223-CDS-L-elsbetiae_contig9786:6563..6704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 6564..6704 +
1691684002.1733363-CDS-L-elsbetiae_contig9786:6563..67041691684002.1733363-CDS-L-elsbetiae_contig9786:6563..6704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9786 6564..6704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9786.18742.1prot_L-elsbetiae_contig9786.18742.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9786 6564..6704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9786.18742.1

>prot_L-elsbetiae_contig9786.18742.1 ID=prot_L-elsbetiae_contig9786.18742.1|Name=mRNA_L-elsbetiae_contig9786.18742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
FRSDVEVAFSSASLATIACNTLAVDAELQPDKIIRTLRVEGSSLRA*
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mRNA from alignment at L-elsbetiae_contig9786:6564..6704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9786.18742.1 ID=mRNA_L-elsbetiae_contig9786.18742.1|Name=mRNA_L-elsbetiae_contig9786.18742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=141bp|location=Sequence derived from alignment at L-elsbetiae_contig9786:6564..6704+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCGCAGCGACGTCGAGGTTGCTTTTTCATCAGCATCGCTGGCGACAAT
AGCGTGCAACACTTTGGCCGTAGACGCGGAGTTGCAGCCGGACAAAATTA
TCCGGACCCTTCGAGTGGAAGGATCTTCCCTGCGAGCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9786:6564..6704+

>mRNA_L-elsbetiae_contig9786.18742.1 ID=mRNA_L-elsbetiae_contig9786.18742.1|Name=mRNA_L-elsbetiae_contig9786.18742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig9786:6564..6704+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCGCAGCGACGTCGAGGTTGCTTTTTCATCAGCATCGCTGGCGACAAT
AGCGTGCAACACTTTGGCCGTAGACGCGGAGTTGCAGCCGGACAAAATTA
TCCGGACCCTTCGAGTGGAAGGATCTTCCCTGCGAGCGTGATTTCGCAGC
GACGTCGAGGTTGCTTTTTCATCAGCATCGCTGGCGACAATAGCGTGCAA
CACTTTGGCCGTAGACGCGGAGTTGCAGCCGGACAAAATTATCCGGACCC
TTCGAGTGGAAGGATCTTCCCTGCGAGCGTGA
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