mRNA_L-elsbetiae_contig9782.18740.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9782.18740.1
Unique NamemRNA_L-elsbetiae_contig9782.18740.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Match: D8LF67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF67_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.900e-36
Identity = 89/159 (55.97%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:    1 MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQK-------AGAGRDKGAGGGGRREGWLARAKISNKKARKISVLVRRDV--GGARTASIQDRTTPPCKRCSKTSRNDETAVSSLHRIVLSGTDRGREEIDACMYDSGGHEEAGAKASG 450
            MVLL+S D FF ELE MF  CK+RGAGTVY TLKKVE G+KQ+        GAGR K AG GGRREGWLARAKISN+KARKISVL   D      R     D + P C     T R    +V      V  G+ RGR+E +ACMYDSG H+EA A+ASG
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTETGAGR-KAAGPGGRREGWLARAKISNQKARKISVLASLDTPPDDGRPQQTYDVSCPLCFPVFFTRRQHRPSVRRRGSSVP-GSIRGRKEGNACMYDSGRHQEARAEASG 157
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BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Match: A0A6H5L6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.930e-26
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQK-------AGAGRDKGAGGGGRREGWLARAKISNKKARKISVLVRRDVGGARTASIQDR 282
            MVLL+S D FF ELE MF  CK+RGAGTVY TLKKVE G+KQ+        G GR K AG GGRREGWLARAKISN+KARKISVLV      A  A  +DR
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKASKETGGGR-KSAGPGGRREGWLARAKISNQKARKISVLV----SDAEVAQCRDR 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9782.18740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF67_ECTSI1.900e-3655.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6K8_9PHAE4.930e-2664.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9782contigL-elsbetiae_contig9782:1665..6473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSignal recognition particle, SRP9/SRP14 subunit
Ec32 orthologEc-06_001860.2
Exons3
Model size450
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9782.18740.1prot_L-elsbetiae_contig9782.18740.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9782 1665..6473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.063987-CDS-L-elsbetiae_contig9782:1664..19201622817040.063987-CDS-L-elsbetiae_contig9782:1664..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 1665..1920 +
1691684001.9808984-CDS-L-elsbetiae_contig9782:1664..19201691684001.9808984-CDS-L-elsbetiae_contig9782:1664..1920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 1665..1920 +
1622817040.0770302-CDS-L-elsbetiae_contig9782:6080..61851622817040.0770302-CDS-L-elsbetiae_contig9782:6080..6185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 6081..6185 +
1691684002.0049653-CDS-L-elsbetiae_contig9782:6080..61851691684002.0049653-CDS-L-elsbetiae_contig9782:6080..6185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 6081..6185 +
1622817040.0888388-CDS-L-elsbetiae_contig9782:6384..64731622817040.0888388-CDS-L-elsbetiae_contig9782:6384..6473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 6385..6473 +
1691684002.0219758-CDS-L-elsbetiae_contig9782:6384..64731691684002.0219758-CDS-L-elsbetiae_contig9782:6384..6473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9782 6385..6473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9782.18740.1

>prot_L-elsbetiae_contig9782.18740.1 ID=prot_L-elsbetiae_contig9782.18740.1|Name=mRNA_L-elsbetiae_contig9782.18740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MVLLNSEDEFFSELEHMFEFCKERGAGTVYITLKKVEGGSKQKAGAGRDK
GAGGGGRREGWLARAKISNKKARKISVLVRRDVGGARTASIQDRTTPPCK
RCSKTSRNDETAVSSLHRIVLSGTDRGREEIDACMYDSGGHEEAGAKASG
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mRNA from alignment at L-elsbetiae_contig9782:1665..6473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9782.18740.1 ID=mRNA_L-elsbetiae_contig9782.18740.1|Name=mRNA_L-elsbetiae_contig9782.18740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4809bp|location=Sequence derived from alignment at L-elsbetiae_contig9782:1665..6473+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCTTGCTAAACTCGGAGGATGAGTTCTTCAGCGAACTAGAGCACAT
GTTCGAGTTTTGCAAAGAGAGAGGTGCCGGAACTGTCTACATCACCCTGA
AGAAAGTTGAGGGTGGGAGCAAACAGAAGGCAGGGGCTGGGAGGGATAAA
GGGGCCGGAGGCGGTGGAAGGAGAGAAGGGTGGCTCGCGCGCGCCAAGAT
ATCAAACAAGAAGGCGCGCAAGATATCTGTGTTGGTGAGAAGAGACGTGG
GGGGCGGTTTGTCTGGGATCATGGTAAATCTTCGAAAATATTGGCATCCC
ATTGCCTTTGATCGAGCGGTGGGAGGACACCAGTATGTAGGTACAACAGG
AGGTGAGACGGACACCCACAACAGCAGGGTCTAGGTGTATACCTAGGTGC
TTTGAATCCGCTGGAAGGCGGAGAACACGAGAACACCGATACAAAGATTA
CGCACCTACCTCAAAAACTATCCTCGTACCGAAAGCTAACATAAAGTCTC
TCTGATGTGTACAGCTCTTGGATGTGGGTACCACAGCTACTGGCGGATGC
TGTGTTCTTTCTGTGTGTCCGTGGTCTCGGCGTGCAACCTAGCGGTGACA
TCCAACTTCGCCCTCTTTGAGAGGATGGGAGTGTTACGCAAAAGCTACCA
ACATAGCTGTGCCACCGGCATCGGTGACCTAAACGCGCTACATACTCCTA
TATTGTAGTCTACTACTGCTGTAAGTGTTTTGTAGTTCGTAGTCAGAACT
ACACGAAACACTAGCTAGTACCTCGGTACATAAAGGTGAGAAAGACTATA
GGGTACCTACCCACAGAGCCGTACCGGCGATACCCTCTGTAAATACCCTA
CAGAGCTTTTCTGTGAGTTCTGTAACGCTTCCGGCACAGTACCCTACACT
TCTGTGACTTCTGTAACGTTTCCAAAACAGTACCCTACACTTCTGTGACT
TCTGTATTGTAGCTCTGCCAACAAACCCGGATAGCTTCTGTGACTTCTGT
AACCGTTGGGCAACAGCAGTACCCTACATTTCTGTGGCTTGTGTAACAGT
TCTGTAACAGCACTATACATTGCTGTGACTTGTGTAACACGTCTGTATCA
GTACCCTGCACGCCTGTGACTTCTGTAACAATTCTTGAACAGTGCCCGTC
GCCTCGGTGGTCTAGTGGTTTTAACGTCAAACCCACTAGCAGCAAAGTCC
GGAGTTCAATCCCAAGCAGAAGTGTTTCCTTTGCGACTTTGCAGGTGAAA
GCGATAAAAGCTGAAAAGCTCGTGAGTACCAAACTTCGACGTAATCACGT
TGACGAGGGAAAGGGACAGCTGAACCCTTCTCGCGATAAAACCCAAGGCA
AGAACCGCAGGAGGAAGGTGGGGCAAAAAAAGAAAATAAAAAAGAAGAAA
AAGCCCCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTGGTCTAGTTGTA
CAGACAAATGCACTGCAAGTACACCGCAAGGTGTAGTACACGTCTCCACT
TGGGGGAACTGTCGCCAAAATAAATGGGAAGGACACACACACACACACAC
ACACTCCTACTGCGACTTTTGTAACAATTCTGTAACAGCATCACCCCTAC
ACTTCTTGTGACTTGAGAACAAAACAATACCCTACAAACCCGGGGAACTG
GTTCACATACCGGCAGGTTGTGATTCACGCCACAAAAAAACTCCTTGAAG
CGTAAATACCTTTGTTTTTTGTTTTTTTTTACAGGACAAGACACACCCCA
CACATCACACATCCCCACACCCCAACATCTGTACCACACACACCTGTGTT
TGTACATCTGTGGGAAGCTTTAGCCTGAGACGGAACATGAATACTAGTGC
TATCTTCACGGCAAACTCGGGCAGTTCATCCACGCCATCACAGCAAGAAG
GCGCGGGTGAGGGAAGCGAAGATGTATGTAGGTGTGCCCGTCATCAAACC
TAAGCCCGTCTTCAACACGAAGGGAGAGGAGGTTGCGCTAGATCAGGCAA
CCGTCGATGCCGTCGATAACTTCTCGATCCCCTCTAGCTGAGCGAGGAGG
GGTTCCCGCCAGCAGTCGTACATGTACTTGGTCGGCGTGTACGGCGAGGC
GTCGGAAGGCGGAAAGCACAAGTACTTCTACCTGGCTAATTATGTGTGCT
GGAGAACGGGATAAACGACTCCCTGCAACAACAGAGACCGCAGCAACGTC
AACACGCATCTCAAGAGAGCGCGCAGTCTGTGAACATACCCGGTGACCTC
TGTACCCTAAACTTCTGTGACTTCTGTAACGCCTCCGGTACCTTACAGAA
CTTTTAGGTGTGACTTCTGTAACGCTTCCACAACAGTACCCTACACTTCT
GTGACTTCTGTAACGCTTCCAAAACAGTACCCGACTGCTTATGTGAGCTC
TGTCAACAAACCCGGATAGCTTCTGTGAATTCTGTAACAAATCTGTGACA
CAGTAGTAACCTACAATTTATGTGACTTCTATAACAGTACAATACCGTAC
CCGGATCTCACAGACCCTACAGATCCAGACCTTGGAAAAGAACATAAGAA
GTCGCCTACAATACAAGTAGTATGCCCGCTTGCTGATCGAAAAAATTACA
AATAGTAATCCCGCCGCGTTCTCGGCCCGTTTTCGGAGAGCAACAAAACT
CAAAAACACGTTCCAAAAATGCGTTCTAAAGTTTTCTCGCCGCTCACGCA
ACCAATGGACGTCTAATTTCGCCGGTGATTGCTTGTGGGCGTCAAGGTTG
TGCACCTCCAAATCCAGCCTCGATGGACCACCTCAAATCTCGGTTGAACC
CCGGTTCACCTATCTTTACCCATTAGAGCACGCGTGCGAGCCGCTGACGC
TGTAGCAAAGTCTGCCGCACATCGTGTGGCCGAGGTAGTTACGTAGAAAT
CGTTTAGGAGGAAACCAAGACTCTGTGCAGACGCCTGCGCGACCTCGGTG
GTGGCACTCACGTAGATCAGGTTTCATCTTTCATTTTTTAACTGGCGCGC
ACGAGTGACCAATTACACACAGGATGTGGAGGCAGGTTGAGATATTTTCC
TGCACAGCTCGCGGATACACCCATCTACGTATATCACAAAGGGGCGTCCG
GGTGAGGTTTTTCTGACCGCAAGAGGGCGTGGTGATGATGTATACTCAAA
GCCCGAGAACTCGAGAGTACGGAGCATGCGGCGGTTTGTGTTTGGTTTGT
TTCTACAGCAGACAAGACGCGGTTGTGTTCCCCTCTCGCCTCGAGCTCCA
CAGAGGTCCCTGCTGCTGTAGGCAACCATTCCTACATCTTTGTGTTGCTC
TACATATTGCGCGGCGTTATCGCGAGTCTCTTCTGTGGTGTGTCGAGCAC
ACCTGCCGTCCCATGCCGCTGGATTTTTTTTGGCTGTCACAAGATGGGGG
GGGAGGGGTGATCAGCCAAAATGGCTGGCGGGGGGGGGGGGGTCTGTTAC
GGTGGCGACCAAGCCTCCTGCAGCTGGTATTTATCTTTGTACTTGGTGTT
TTTTGCATCACGGGTGGGTGCTATTGTGATCATCACGAGCGCCCCGGCAC
CAGTATGAGTTTTGCTTTTCATTTGCAACAATCACTCGTTCCTGGAAACT
TACGGAGGGAGCACCTCCGCAGGACACTCCCAGGGAGAGCGCCTGTGTCT
GTGTCTTAGCATGCTTACCAAGGAATTCTCCCAGATATCTCTTCTCTCTC
CTCCTCAACTCGCCTCACCCACACCCTGTTTGCTCCTACACCAAAGGAAG
GAAGGGTACTCACACGAGGCTGGGGCTACCCCAGGCGAGTTAGAAAACAT
AGTCAGATTACGAAGAGACCCCGGATACCACTTGGCAGCTTGACTAAATA
AATAGCCTTGTTCTACCTACATGTGGTGTCGAGAACAAGGCCGCGACAAA
CGCCGACGCGGCCATGTTTTGGAGGCGTGTTCGGTGATGCCTACCAGAAA
CTTCGATGCACGCACCAGAAAATAGCATGGACGTGACACTCGCCGTTCCT
TTTCTACTGCGCGCGTGGCAACACGTTTGTCGGGGGGAAGCTGTCGGCGA
AGTTCGAAAAGCTTGAATTTGGGCTTGACACCGGGCGTTCTGTGTGTGTT
CGGTTCGCGATCAGTTTGGGGTCCGAGGTGGTGATCAGTTAGCGAAGAGA
TGTATCGCGAGTAACGTGTTTCCTTGCATCGCAGCGCTTGTATGGAGTAT
AAAGAAGACTCCCTGCCGAAGATTTATCTTCTCTACTGCATGGCAGTACC
TCCATATTGTGCGGGTGCTCAACATTTTGACGGTCCACACACCCTCATAA
TTTTAATTTTGTGGCGCGTATGTATTGTTTGTTAAATGAAAAAATGCTAG
TGCCTTGAACCTTTCAGCAGGCCAAACACATGAAACCCTAAACCCTTCCG
TGTCTTGGCCGGCGAGCACGAACTGCATCCATCCAGGATCGAACCACGCC
CCCTTGCAAACGCTGCTCAAAAACATCAAGGAACGACGAGACTGCCGTCA
GCTCTCTGCACCGCATCGTCCGTGCCTTTATAATTATGCCCTACATATAA
TGCCGAAAGTGAACAAATAAGTTTTTCTTCTCACGCTGCCTTATTTGTGT
GCTCTCTCTCCCCTCTTCCCTCCTCCCACCCTCCCTCTCCTCCCGTCCCG
ACTTCGCCCCGCCCCACCCCGCGTCGCCCCTCGCCCCTCGCCACAGGTGT
CAGAAGCGGAAGTAGTTGAGTGTCGGGCACGGATAGAGGCCGTGAGGAAA
TCGATGCCTGTATGTACGATAGCGGGGGGCACGAAGAAGCGGGGGCGAAA
GCCAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9782:1665..6473+

>mRNA_L-elsbetiae_contig9782.18740.1 ID=mRNA_L-elsbetiae_contig9782.18740.1|Name=mRNA_L-elsbetiae_contig9782.18740.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig9782:1665..6473+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCTTGCTAAACTCGGAGGATGAGTTCTTCAGCGAACTAGAGCACAT
GTTCGAGTTTTGCAAAGAGAGAGGTGCCGGAACTGTCTACATCACCCTGA
AGAAAGTTGAGGGTGGGAGCAAACAGAAGGCAGGGGCTGGGAGGGATAAA
GGGGCCGGAGGCGGTGGAAGGAGAGAAGGGTGGCTCGCGCGCGCCAAGAT
ATCAAACAAGAAGGCGCGCAAGATATCTGTGTTGGTGAGAAGAGACGTGG
GGGGCGATGGTCTTGCTAAACTCGGAGGATGAGTTCTTCAGCGAACTAGA
GCACATGTTCGAGTTTTGCAAAGAGAGAGGTGCCGGAACTGTCTACATCA
CCCTGAAGAAAGTTGAGGGTGGGAGCAAACAGAAGGCAGGGGCTGGGAGG
GATAAAGGGGCCGGAGGCGGTGGAAGGAGAGAAGGGTGGCTCGCGCGCGC
CAAGATATCAAACAAGAAGGCGCGCAAGATATCTGTGTTGGTGAGAAGAG
ACGTGGGGGGCGCACGAACTGCATCCATCCAGGATCGAACCACGCCCCCT
TGCAAACGCTGCTCAAAAACATCAAGGAACGACGAGACTGCCGTCAGCTC
TCTGCACCGCATCGTCCCACGAACTGCATCCATCCAGGATCGAACCACGC
CCCCTTGCAAACGCTGCTCAAAAACATCAAGGAACGACGAGACTGCCGTC
AGCTCTCTGCACCGCATCGTCCTGTCGGGCACGGATAGAGGCCGTGAGGA
AATCGATGCCTGTATGTACGATAGCGGGGGGCACGAAGAAGCGGGGGCGA
AAGCCAGCGGGTGTCGGGCACGGATAGAGGCCGTGAGGAAATCGATGCCT
GTATGTACGATAGCGGGGGGCACGAAGAAGCGGGGGCGAAAGCCAGCGGG
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