mRNA_L-elsbetiae_contig9775.18732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9775.18732.1
Unique NamemRNA_L-elsbetiae_contig9775.18732.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A6H5JYI9_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.440e-15
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    4 GTYFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVAA 117
            GTYFPAVSLYMGGSVRVNFGP+FVYPPPRS G+KPVAA
Sbjct:  281 GTYFPAVSLYMGGSVRVNFGPDFVYPPPRSLGYKPVAA 318          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A139AJC4_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AJC4_GONPJ)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-7
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   10 YFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVA 114
            Y+PAVSL+ GG+V  NFGP F +PPP   GWKP++
Sbjct:  735 YYPAVSLFRGGTVTANFGPSFRFPPPSDSGWKPMS 769          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A7S4RRV6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RRV6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    4 GTYFPAVSLYMGGSVRVNFGPEFVYPP 84
            G YFPA+S YMGGSVRVNFGP F+YPP
Sbjct:  545 GHYFPAISAYMGGSVRVNFGPHFIYPP 571          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A7S4HKK6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HKK6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.720e-7
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1
Query:    4 GTYFPAVSLYMGGSVRVNFGPEFVYPP 84
            GTY+PAVS+YMGG+VR+NFGP FV+PP
Sbjct:  333 GTYYPAVSVYMGGAVRINFGPHFVHPP 359          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A1Z5KB17_FISSO (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB17_FISSO)

HSP 1 Score: 53.9 bits (128), Expect = 2.720e-7
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    4 GTYFPAVSLYMGGSVRVNFGPEFVYPP 84
            G Y+PAVSLY+GGSVR NFGP FVYPP
Sbjct:  305 GVYYPAVSLYLGGSVRANFGPHFVYPP 331          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A7S3VAV2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAV2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-6
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1
Query:    1 AGTYFPAVSLYMGGSVRVNFGPEFVYPP 84
            AGTY+PA+S YMGGS RVNFGP F+ PP
Sbjct:  501 AGTYYPAISSYMGGSARVNFGPHFICPP 528          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A8H7SCP3_9FUNG (B30.2/SPRY domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SCP3_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-6
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1
Query:   10 YFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVA 114
            Y+PAVS+Y GG V  NFGPEF YPP     WKP++
Sbjct:  566 YYPAVSVYKGGMVSCNFGPEFQYPPKIDEDWKPMS 600          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A8H7Q745_9FUNG (B30.2/SPRY domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q745_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-6
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   10 YFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVA 114
            Y+PAVS+Y GG V  NFGP F YPP  S GW+P++
Sbjct:  557 YYPAVSVYGGGVVSCNFGPNFQYPPRTSSGWRPMS 591          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: A0A2C6L142_9APIC (Spry domain-containing protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L142_9APIC)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 GTYFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVA 114
            G+Y PAVSLYMG ++++N GPEFVYPP  S  +KP +
Sbjct:  695 GSYHPAVSLYMGATLKLNPGPEFVYPPDPSENFKPCS 731          
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Match: B7G101_PHATC (Absent, small, or homeotic discs 2 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G101_PHATC)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1
Query:    1 AGTYFPAVSLYMGGSVRVNFGPEFVYPP 84
            +GTY+PAVS YMGG+V  NFGP FVYPP
Sbjct:  560 SGTYYPAVSSYMGGTVHANFGPTFVYPP 587          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9775.18732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYI9_9PHAE1.440e-1592.11B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A139AJC4_GONPJ1.060e-760.00Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A7S4RRV6_9STRA1.980e-781.48Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4HKK6_9STRA2.720e-777.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KB17_FISSO2.720e-781.48Set1/Ash2 histone methyltransferase complex subuni... [more]
A0A7S3VAV2_9STRA1.300e-675.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8H7SCP3_9FUNG1.300e-660.00B30.2/SPRY domain-containing protein n=1 Tax=Mucor... [more]
A0A8H7Q745_9FUNG1.300e-660.00B30.2/SPRY domain-containing protein n=1 Tax=Umbel... [more]
A0A2C6L142_9APIC1.770e-659.46Spry domain-containing protein n=1 Tax=Cystoisospo... [more]
B7G101_PHATC1.770e-675.00Absent, small, or homeotic discs 2 n=2 Tax=Phaeoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9775contigL-elsbetiae_contig9775:287..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.5153725-CDS-L-elsbetiae_contig9775:286..4031622817039.5153725-CDS-L-elsbetiae_contig9775:286..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9775 287..403 +
1691684001.600727-CDS-L-elsbetiae_contig9775:286..4031691684001.600727-CDS-L-elsbetiae_contig9775:286..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9775 287..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9775.18732.1prot_L-elsbetiae_contig9775.18732.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9775 287..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9775.18732.1

>prot_L-elsbetiae_contig9775.18732.1 ID=prot_L-elsbetiae_contig9775.18732.1|Name=mRNA_L-elsbetiae_contig9775.18732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
AGTYFPAVSLYMGGSVRVNFGPEFVYPPPRSHGWKPVAA
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mRNA from alignment at L-elsbetiae_contig9775:287..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9775.18732.1 ID=mRNA_L-elsbetiae_contig9775.18732.1|Name=mRNA_L-elsbetiae_contig9775.18732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig9775:287..403+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGTACCTATTTCCCGGCCGTGTCTCTGTACATGGGCGGCAGCGTGAG GGTTAACTTCGGGCCGGAGTTCGTGTACCCCCCGCCGAGATCGCATGGCT GGAAGCCGGTGGCGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9775:287..403+

>mRNA_L-elsbetiae_contig9775.18732.1 ID=mRNA_L-elsbetiae_contig9775.18732.1|Name=mRNA_L-elsbetiae_contig9775.18732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig9775:287..403+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGGTACCTATTTCCCGGCCGTGTCTCTGTACATGGGCGGCAGCGTGAG
GGTTAACTTCGGGCCGGAGTTCGTGTACCCCCCGCCGAGATCGCATGGCT
GGAAGCCGGTGGCGGCTGCAGGTACCTATTTCCCGGCCGTGTCTCTGTAC
ATGGGCGGCAGCGTGAGGGTTAACTTCGGGCCGGAGTTCGTGTACCCCCC
GCCGAGATCGCATGGCTGGAAGCCGGTGGCGGCT
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