mRNA_L-elsbetiae_contig9774.18730.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9774.18730.1
Unique NamemRNA_L-elsbetiae_contig9774.18730.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9774.18730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9774contigL-elsbetiae_contig9774:172..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size833
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9774.18730.1prot_L-elsbetiae_contig9774.18730.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9774 291..899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.4283247-UTR-L-elsbetiae_contig9774:171..2901622817039.4283247-UTR-L-elsbetiae_contig9774:171..290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9774 172..290 +
1691684001.5289514-UTR-L-elsbetiae_contig9774:171..2901691684001.5289514-UTR-L-elsbetiae_contig9774:171..290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9774 172..290 +
1622817039.4512863-UTR-L-elsbetiae_contig9774:899..10041622817039.4512863-UTR-L-elsbetiae_contig9774:899..1004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9774 900..1004 +
1691684001.5702388-UTR-L-elsbetiae_contig9774:899..10041691684001.5702388-UTR-L-elsbetiae_contig9774:899..1004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9774 900..1004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817039.4409354-CDS-L-elsbetiae_contig9774:290..8991622817039.4409354-CDS-L-elsbetiae_contig9774:290..899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9774 291..899 +
1691684001.544561-CDS-L-elsbetiae_contig9774:290..8991691684001.544561-CDS-L-elsbetiae_contig9774:290..899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9774 291..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9774.18730.1

>prot_L-elsbetiae_contig9774.18730.1 ID=prot_L-elsbetiae_contig9774.18730.1|Name=mRNA_L-elsbetiae_contig9774.18730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MVNHGSNHGMPWHAMVDHGSNHGRPWLTMVNRGSNHGKIRIMWKTPFFLQ
HVVSWSIWVQARHLPSRASAWWQSYTRLKPLARISGDVTHITHTNSNNTW
VSNLGRRRCFCCNRAYFAHINTFVEKNECGVLSPLCRCDRTRFGLRVPST
PSASPLVRLRPLLDRRQNKWEGHTHMHGMQRIIEKYFQSGGRSWNFSKKK
PR*
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mRNA from alignment at L-elsbetiae_contig9774:172..1004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9774.18730.1 ID=mRNA_L-elsbetiae_contig9774.18730.1|Name=mRNA_L-elsbetiae_contig9774.18730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=833bp|location=Sequence derived from alignment at L-elsbetiae_contig9774:172..1004+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAACCACGGGCTATAAACCCCAGATCAACCCGCAGTGGCCGTTGAGC
CGGAACGTTCTAGGAAAAAGGAGAACCAGAACCTATCGACAAAGTCGTGA
GCGCCCACAATGGTTAACCATGGTTAACCATGGTTCGAACCATGGCATGC
CATGGCATGCCATGGTCGACCACGGTTCGAACCATGGTCGACCATGGTTA
ACCATGGTCAACCGTGGTTCGAACCATGGTAAAATACGAATAATGTGGAA
GACCCCTTTTTTCTTGCAGCATGTCGTTTCCTGGAGTATTTGGGTACAGG
CGCGCCACCTACCGTCTCGAGCTTCGGCGTGGTGGCAGAGTTACACCCGA
CTGAAGCCGTTGGCGCGTATTTCCGGTGACGTCACACACATCACACACAC
TAACAGCAACAACACGTGGGTTTCGAATCTTGGAAGGAGACGCTGCTTTT
GCTGCAATCGCGCGTACTTTGCCCACATAAACACTTTTGTCGAAAAAAAT
GAGTGTGGCGTACTGTCCCCTCTCTGCCGGTGCGATCGCACCCGCTTTGG
GCTTCGGGTTCCATCTACACCCTCCGCTTCTCCATTGGTACGTTTACGTC
CATTACTGGATCGTCGCCAAAATAAATGGGAAGGACACACACACATGCAT
GGGATGCAGCGAATCATTGAAAAATATTTTCAGAGCGGCGGACGATCTTG
GAATTTTTCAAAAAAGAAACCCCGATAGCAATTTGGCACACATATCATCA
TCAGTATATTCTACACAGCAGCAAAGACGCCACGACTTCTGTGTTAAGTT
TTTTTACCCGTAGCTTTCATCTATCTGATGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9774:172..1004+

>mRNA_L-elsbetiae_contig9774.18730.1 ID=mRNA_L-elsbetiae_contig9774.18730.1|Name=mRNA_L-elsbetiae_contig9774.18730.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig9774:172..1004+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTAACCATGGTTCGAACCATGGCATGCCATGGCATGCCATGGTCGA
CCACGGTTCGAACCATGGTCGACCATGGTTAACCATGGTCAACCGTGGTT
CGAACCATGGTAAAATACGAATAATGTGGAAGACCCCTTTTTTCTTGCAG
CATGTCGTTTCCTGGAGTATTTGGGTACAGGCGCGCCACCTACCGTCTCG
AGCTTCGGCGTGGTGGCAGAGTTACACCCGACTGAAGCCGTTGGCGCGTA
TTTCCGGTGACGTCACACACATCACACACACTAACAGCAACAACACGTGG
GTTTCGAATCTTGGAAGGAGACGCTGCTTTTGCTGCAATCGCGCGTACTT
TGCCCACATAAACACTTTTGTCGAAAAAAATGAGTGTGGCGTACTGTCCC
CTCTCTGCCGGTGCGATCGCACCCGCTTTGGGCTTCGGGTTCCATCTACA
CCCTCCGCTTCTCCATTGGTACGTTTACGTCCATTACTGGATCGTCGCCA
AAATAAATGGGAAGGACACACACACATGCATGGGATGCAGCGAATCATTG
AAAAATATTTTCAGAGCGGCGGACGATCTTGGAATTTTTCAAAAAAGAAA
CCCCGATAGATGGTTAACCATGGTTCGAACCATGGCATGCCATGGCATGC
CATGGTCGACCACGGTTCGAACCATGGTCGACCATGGTTAACCATGGTCA
ACCGTGGTTCGAACCATGGTAAAATACGAATAATGTGGAAGACCCCTTTT
TTCTTGCAGCATGTCGTTTCCTGGAGTATTTGGGTACAGGCGCGCCACCT
ACCGTCTCGAGCTTCGGCGTGGTGGCAGAGTTACACCCGACTGAAGCCGT
TGGCGCGTATTTCCGGTGACGTCACACACATCACACACACTAACAGCAAC
AACACGTGGGTTTCGAATCTTGGAAGGAGACGCTGCTTTTGCTGCAATCG
CGCGTACTTTGCCCACATAAACACTTTTGTCGAAAAAAATGAGTGTGGCG
TACTGTCCCCTCTCTGCCGGTGCGATCGCACCCGCTTTGGGCTTCGGGTT
CCATCTACACCCTCCGCTTCTCCATTGGTACGTTTACGTCCATTACTGGA
TCGTCGCCAAAATAAATGGGAAGGACACACACACATGCATGGGATGCAGC
GAATCATTGAAAAATATTTTCAGAGCGGCGGACGATCTTGGAATTTTTCA
AAAAAGAAACCCCGATAG
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