mRNA_L-elsbetiae_contig9767.18722.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9767.18722.1
Unique NamemRNA_L-elsbetiae_contig9767.18722.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9767.18722.1 vs. uniprot
Match: D8LGU7_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-9
Identity = 31/65 (47.69%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 MEIDMSSPFECSCGAGNCRGLVSGFANLPPAAXXXXXXXXXXXXXXXXXXXXTGAVKAWAKENHV 195
            MEIDMS PFEC CGA  CRGLVSGF+NL                        TGAVK WA+E+++
Sbjct:    1 MEIDMSCPFECQCGAVRCRGLVSGFSNLSRVEQKEYINGGATRSPSL-----TGAVKMWAEEHNI 60
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BLAST of mRNA_L-elsbetiae_contig9767.18722.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.910e-8
Identity = 31/65 (47.69%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 MEIDMSSPFECSCGAGNCRGLVSGFANLPPAAXXXXXXXXXXXXXXXXXXXXTGAVKAWAKENHV 195
            MEIDMS PF+C CGA  CRG VSGF+NL  A                     TGAVK WA+EN +
Sbjct:  296 MEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEYIDGGATKSPPL-----TGAVKTWAQENDI 355
[Close]
BLAST of mRNA_L-elsbetiae_contig9767.18722.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.090e-7
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 MEIDMSSPFECSCGAGNCRGLVSGFANLPPAAXXXXXXXXXXXXXXXXXXXXTGAVKAWAKENHV 195
            MEIDM+ PF+C CGA  CRG VSGF+NL  A                     TGAVK WA+E+ +
Sbjct:   44 MEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYIDGGATGSPPL-----TGAVKTWAEEHGI 103
[Close]
BLAST of mRNA_L-elsbetiae_contig9767.18722.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.580e-7
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 MEIDMSSPFECSCGAGNCRGLVSGFANLPPAAXXXXXXXXXXXXXXXXXXXXTGAVKAWAKENHV 195
            MEIDM+ PF+C CGA  CRG VSGF+NL  A                     TGAVK WA+E+ +
Sbjct:  203 MEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEYIDGGATGSPPL-----TGAVKTWAEEHGI 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9767.18722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGU7_ECTSI1.220e-947.69Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JKC4_9PHAE5.910e-847.69Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
D8LGU6_ECTSI1.090e-744.62Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N9_9PHAE8.580e-744.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9767contigL-elsbetiae_contig9767:507..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001250.1
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817038.688762-CDS-L-elsbetiae_contig9767:506..6381622817038.688762-CDS-L-elsbetiae_contig9767:506..638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 507..638 +
1691684001.0370393-CDS-L-elsbetiae_contig9767:506..6381691684001.0370393-CDS-L-elsbetiae_contig9767:506..638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 507..638 +
1622817038.6998458-CDS-L-elsbetiae_contig9767:671..7491622817038.6998458-CDS-L-elsbetiae_contig9767:671..749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 672..749 +
1691684001.0487797-CDS-L-elsbetiae_contig9767:671..7491691684001.0487797-CDS-L-elsbetiae_contig9767:671..749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9767 672..749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9767.18722.1prot_L-elsbetiae_contig9767.18722.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9767 507..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9767.18722.1

>prot_L-elsbetiae_contig9767.18722.1 ID=prot_L-elsbetiae_contig9767.18722.1|Name=mRNA_L-elsbetiae_contig9767.18722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MEIDMSSPFECSCGAGNCRGLVSGFANLPPAAQEEYAAAAAAAARAAGPP
PPTGAVKAWAKENHVPGAR*
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mRNA from alignment at L-elsbetiae_contig9767:507..749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9767.18722.1 ID=mRNA_L-elsbetiae_contig9767.18722.1|Name=mRNA_L-elsbetiae_contig9767.18722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=243bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:507..749+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAATCGACATGTCTTCCCCCTTCGAATGCAGTTGCGGCGCCGGCAA
CTGCAGGGGCCTCGTGTCGGGGTTCGCAAACTTGCCCCCCGCCGCGCAGG
AAGAGTATGCAGCAGCAGCAGCAGCAGCAGCAGTAGGGCTAGCAACAGCG
AGAACAGCGGGCGAGAGGGCGGCGGGACCCCCCCCTCCCACCGGCGCCGT
GAAAGCCTGGGCGAAGGAAAACCACGTGCCTGGAGCGCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9767:507..749+

>mRNA_L-elsbetiae_contig9767.18722.1 ID=mRNA_L-elsbetiae_contig9767.18722.1|Name=mRNA_L-elsbetiae_contig9767.18722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig9767:507..749+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAATCGACATGTCTTCCCCCTTCGAATGCAGTTGCGGCGCCGGCAA
CTGCAGGGGCCTCGTGTCGGGGTTCGCAAACTTGCCCCCCGCCGCGCAGG
AAGAGTATGCAGCAGCAGCAGCAGCAGCAGCAATGGAAATCGACATGTCT
TCCCCCTTCGAATGCAGTTGCGGCGCCGGCAACTGCAGGGGCCTCGTGTC
GGGGTTCGCAAACTTGCCCCCCGCCGCGCAGGAAGAGTATGCAGCAGCAG
CAGCAGCAGCAGCAAGGGCGGCGGGACCCCCCCCTCCCACCGGCGCCGTG
AAAGCCTGGGCGAAGGAAAACCACGTGCCTGGAGCGCGGTGAAGGGCGGC
GGGACCCCCCCCTCCCACCGGCGCCGTGAAAGCCTGGGCGAAGGAAAACC
ACGTGCCTGGAGCGCGGTGA
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