mRNA_L-elsbetiae_contig9741.18709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9741.18709.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 406 bits (1044), Expect = 5.480e-128 Identity = 208/251 (82.87%), Postives = 224/251 (89.24%), Query Frame = 1 Query: 1 GDAANQLARENLKQLDNASGTLGQQLPAFPEVAARFLLAKHREFVHEMFLDGLMNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAKASEKKRCLLVPFLKALGEEQLNHVVHDDSFCQEELHGSNVVLLRQSERVKHSGHNKGTSGWYYIVRGSVQMVTVSQEQEPTG--PTATSTGQRNGGHFMGGDGHTAVSGGLEGEGGTSLKIREHPLHAGAVFGMTDAMLGLPFRATYTSTSFVHLFFFDR 747 GDAANQLARENLKQLD+ASGTLG QLPAFPEVAARFLLAKHREFVHEMFLDGL+NEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAK VPFLK+L E+Q+ VV+DD FCQEELHGSNVVLLRQSERVKHSGHNKGT+GWYYIVRGSVQMVTVSQE++ + P A+ G R GG FMGGDGHT +GG EGEGG+S+KI+EHPLHAGAVFGMTD+MLGLPFRATYTSTSFVHLFFFDR Sbjct: 944 GDAANQLARENLKQLDDASGTLGHQLPAFPEVAARFLLAKHREFVHEMFLDGLLNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAK---------VPFLKSLSEDQVVQVVNDDRFCQEELHGSNVVLLRQSERVKHSGHNKGTTGWYYIVRGSVQMVTVSQERDSSSEAPHASGAG-RKGGLFMGGDGHTTAAGGFEGEGGSSVKIKEHPLHAGAVFGMTDSMLGLPFRATYTSTSFVHLFFFDR 1184
BLAST of mRNA_L-elsbetiae_contig9741.18709.1 vs. uniprot
Match: A0A835Z8G2_9STRA (Sodium/hydrogen exchanger family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G2_9STRA) HSP 1 Score: 171 bits (433), Expect = 6.490e-45 Identity = 101/246 (41.06%), Postives = 132/246 (53.66%), Query Frame = 1 Query: 19 LARENLKQLDNA-SGTLGQQLPAFPEVAARFLLAKHREFVHEMFLDGLMNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAKASEKKRCLLVPFLKALGEEQLNHVVHDDSFCQEELHGSNVVLLRQSERVKHSGHNK--GTSGWYYIVRGSVQMVTVSQEQEPTGPTATSTGQRNGGHFMGGDGHTAVSGGLEGEGGTSLKIREHPLHAGAVFGMTDAMLGLPFRATYTSTSFVHLFFFDR 747 LA E + D G Q+L +V+ARF+L +HRE V E+ G +NE+E E LH N L DHPYA+HLPPR V+L+K VPFL+ L +E L +V D+S C E+ HGSNVVL+R + G NK G +GWYYIVRG+V M++ + ++G R+ LHAGAVFGMTD MLG PFR YT+ SFVH+F+FD+ Sbjct: 1016 LAHEGIDMTDLLPEGAAAQRLA---QVSARFMLHRHREVVEELMRGGFINEREGEALLHRNAVSHTLLHDHPYADHLPPRTVLLSK---------VPFLRQLNDEDLKRIVEDESCCSEQFHGSNVVLIRNGAQTVAQGPNKSSGAAGWYYIVRGTVHMISENP--------------------------------VKGR-------RQQVLHAGAVFGMTDQMLGRPFRGAYTTASFVHVFYFDK 1210
BLAST of mRNA_L-elsbetiae_contig9741.18709.1 vs. uniprot
Match: D7FHU8_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU8_ECTSI) HSP 1 Score: 142 bits (358), Expect = 9.210e-38 Identity = 90/260 (34.62%), Postives = 134/260 (51.54%), Query Frame = 1 Query: 1 GDAANQLARENLKQLDNASGTLGQQLPAFPE--------VAARFLLAKHREFVHEMFLDGLMNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAKASEKKRCLLVPFLKALGEEQLNHVVHDDSFCQEELHGSNVVLLRQSERVKHSGHNKGTSGWYYIVRGSVQMVTVSQEQEPTGPTATSTGQRNGGHFMGGDGHTAVSGGLEGEGGTSLKIR---EHPLHAGAVFGMTDAMLGLPFRATYTSTSFVHLFFFDR 747 G A QLA E +QL +A TL QQLP FPE VAA+++L +H E VHE+F G +N++E+E + N ++KL+ HP A+ +P R +L VPFL+ L +E+ +++++ CQEE +GSNVVL+ +G W+ +VRG+V+ T GHT + GGT R E ++AG V G+ + ++ +P+R TYT+ SFVHLFFFD+ Sbjct: 31 GPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHPEVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKN---------VPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQG---WFNVVRGAVRQNTEGML-----------------------GHTTM-------GGTQRLRRLAKERLVNAGTVVGLDEQLMQVPYRCTYTTASFVHLFFFDK 248 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9741.18709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9741.18709.1 >prot_L-elsbetiae_contig9741.18709.1 ID=prot_L-elsbetiae_contig9741.18709.1|Name=mRNA_L-elsbetiae_contig9741.18709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=251bp GDAANQLARENLKQLDNASGTLGQQLPAFPEVAARFLLAKHREFVHEMFLback to top mRNA from alignment at L-elsbetiae_contig9741:21..7330+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9741.18709.1 ID=mRNA_L-elsbetiae_contig9741.18709.1|Name=mRNA_L-elsbetiae_contig9741.18709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7310bp|location=Sequence derived from alignment at L-elsbetiae_contig9741:21..7330+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9741:21..7330+ >mRNA_L-elsbetiae_contig9741.18709.1 ID=mRNA_L-elsbetiae_contig9741.18709.1|Name=mRNA_L-elsbetiae_contig9741.18709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1506bp|location=Sequence derived from alignment at L-elsbetiae_contig9741:21..7330+ (Laminarionema elsbetiae ELsaHSoW15)back to top |