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Homology
BLAST of mRNA_L-elsbetiae_contig974.18707.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.000e-7 Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 2
Query: 263 MPRKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGMV 370
+ ++C HPGCTKRPSYGN G+ KAELCA HA GMV
Sbjct: 5 VSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
BLAST of mRNA_L-elsbetiae_contig974.18707.1 vs. uniprot
Match: D8LG50_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG50_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 7.110e-6 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 2
Query: 263 MPRKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGMVDVRHK 385
M ++C GC KRPSYG G+ KAE CA HAED M+DVR K
Sbjct: 1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSK 41
BLAST of mRNA_L-elsbetiae_contig974.18707.1 vs. uniprot
Match: A0A6H5JW70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW70_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 9.410e-6 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 2
Query: 263 MPRKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGMVDVRHK 385
M ++C GC KRPSYG G+ KAE CA HAED M+DVR K
Sbjct: 1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSK 41
BLAST of mRNA_L-elsbetiae_contig974.18707.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 2.620e-5 Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 2
Query: 263 MPRKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGMVDV 376
+ ++C HPGCTK+PS+G +G+ +AE C PHA+ MV V
Sbjct: 5 VDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIV 42
BLAST of mRNA_L-elsbetiae_contig974.18707.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 3.570e-5 Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 2
Query: 269 RKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGM 367
R+C HPGCTKRPS+G G+ K E CA HA GM
Sbjct: 7 RRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1276 |
| Cds size | 1014 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817037.3742654-CDS-L-elsbetiae_contig974:8778..9792 | 1622817037.3742654-CDS-L-elsbetiae_contig974:8778..9792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig974 8779..9792 - |
| 1691683999.951682-CDS-L-elsbetiae_contig974:8778..9792 | 1691683999.951682-CDS-L-elsbetiae_contig974:8778..9792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig974 8779..9792 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817037.388085-UTR-L-elsbetiae_contig974:9792..9942 | 1622817037.388085-UTR-L-elsbetiae_contig974:9792..9942 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig974 9793..9942 - |
| 1691683999.9674664-UTR-L-elsbetiae_contig974:9792..9942 | 1691683999.9674664-UTR-L-elsbetiae_contig974:9792..9942 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig974 9793..9942 - |
| 1622817037.3993032-UTR-L-elsbetiae_contig974:11995..12107 | 1622817037.3993032-UTR-L-elsbetiae_contig974:11995..12107 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig974 11996..12107 - |
| 1691683999.9780896-UTR-L-elsbetiae_contig974:11995..12107 | 1691683999.9780896-UTR-L-elsbetiae_contig974:11995..12107 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig974 11996..12107 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig974.18707.1 >prot_L-elsbetiae_contig974.18707.1 ID=prot_L-elsbetiae_contig974.18707.1|Name=mRNA_L-elsbetiae_contig974.18707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=338bp
MPRKCLHPGCTKRPSYGNSGTGKAELCAPHAEDGMVDVRHKSKRCSHSGC
EKHPSYGVIGSNKAEFCAPHAKAGMANVVSKRCAHVDCDKQASYGKLGSH
KVELCAEHAEYGMVSVRTKKRCAHKDCSKWPSFGVSGSKKAEFCSEHAKA
GMVDVFNKRCSHVGCSKLPTRGLAGSKKREFCSQHAKSGMVNVVNKRCAH
EGCGKLPSYGVAGSKEREFCRPHAKNGMVCVKNDRRPTPIVSTEPPFSLA
GDGEVDPDFDDGGGYDDGGYDDRGYGDYDDYEPGRGYSRGNAARDRGRGP
RKDKEKTLAAKALRNLASMRPDDPFWLDGKLPPRAPRS back to topmRNA from alignment at L-elsbetiae_contig974:8779..12107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig974.18707.1 ID=mRNA_L-elsbetiae_contig974.18707.1|Name=mRNA_L-elsbetiae_contig974.18707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3329bp|location=Sequence derived from alignment at L-elsbetiae_contig974:8779..12107- (Laminarionema elsbetiae ELsaHSoW15)
GCACTCTTCACGCTGAACGCTGGGTACTTGGACTTCAGAGCAGCACAAGC
CCGCGCATCTCGAACACTTCCTGCGGTCGTTCCTTGTACTTCGCTCTCCA
CGGAAACCGAAGGTGGGTTGGCGCTTTGCCCCTTTTTAACTCCATCCCGT
CGAGACCAAAACCACCCGGACCAAGAGATGACGGAGCGAGAGGGAGAGAA
GCGTGGCGGCGGGTGTGTGCTCGGCCAAATATAAAGCGACGACCATGCCC
CCGGACGTTCTACCCAGCGGCGTGGCTTCTCGTCGATTGTTCGGGGTTGA
TTGGTTCGGCTCGTGGCGCGAGAGATAAGACGCACGCGCGCTTTCCCACT
TTGTCGGGAGAAAAAAAAACGCGCAAAATCTTGACTCGAAAAAAAAATAG
ACACAGCAGGTTTTCTCTTTTTTTGTCCTTTTTCTCCTCCATCAACCGGC
GTAGTCGCTTCTGTTTCTGTTCGTCTCCACGTCTCAATGCTCATGGAGTA
GTCTGTGGGTGCGTTCGAGTGCATGTAGTTGCATGCGAGGTGCAGTCCAA
GTATGATGGATCCATGTGCTCGTATTACCAGATACCATCGCCGCCGAAAT
TCAATAGCCGACTGATGAGGCAGAGCAACAAAAGAGTTGCTGTGGGCGCG
TTTTTTTTTTTTGAACTCACCAACCAACCCCACGTGATCACGCTCATCAC
GGCCTTTTTCTCGACCAATTTTCGAACCGAACTGCATGTTCACGGGCCCT
CTGTATTGCGGATATGTGACAAGCGATTTCGTCCGCATCATGCACAGCGT
GCACCCGTTGTATGTGATTCGGGGCCTGAATAGTGCGGGTATGTATGTAT
GTACGCGCACTAGATTCAAAACCAATTCGTGGAACAAAGGCGCTAGGTAT
AACAATGTTACTACGATACATCGTATTCGCGTCATCACTGAGTTCCAGCT
CAGAGGAGACGCACGCAAAGTAGCCAACAGCGAAAGGGTTACTGCTGTAT
GAGAGCATTACGAGTGAAGGTTTCTGGGAATAAGGTGTAGTGTTCTTCGG
GTTATATGGCCTACGTCCGTTCCGCAGGTGACAAAGAGAACAACGACATG
GTTGAAAATACTGCACATATCTATGACCGAGTCCTGTAGTATATCTAGAT
AAAGCGTGTGTGGTCATATCTGGATCTACTGCTGCGTGTAGATCTGGAGA
ACAGAGATGGCAAGATATTTTGTCCCATGACATTTTTTTCGTAATTGTAC
GCTCGGAGGTGTATTTAAAAAAATAAGTCTGTCCACAGCCCAGCCCGCGT
TGCTACTGTGTTTTGCGTGTTCCATTCTGCATCGATGGTTCCGCATGTAG
TTTACAAAAAAAACAGGGTGGTACGTGGTGTTGTGATGGGATGGTATGCC
ACCACTGAATGGGATGGGATGGTAATGGGATGGGAATTTCGGTCCCATCA
CCAGATACCATCAAGTCGCCACCACACGCCATTCGGAGGCACCATCAGTA
AAGAGGTGCTGGTTTTTGAACGCTTCCCCATCCCATCTAATTTAGCACCC
CAGCTGCTGAAATCACCACCATCCCATCGACAACAGTCTTCTCCCACCCA
TCCCTCTTCTCCGAGATTTTCCACGAACACCACCAATAAACACGCGCACC
TCTCGCCCCCCCCACCCAATATTATGGTACTTTCTGAGGGAGCGGGGGAT
ACACGGGGCGGACAATGTGTGGGCACGGAGGGTAGGGGGTTGACCCGCGC
TTCGCGCGCGCACACATCACCCAAAAACAATAAACAAAAAAAACTCAAGC
CGGTCTTCAGTAACATGCGTGCCGGTACCCTGCCCCATAAGATCGAGCAG
ATGCTGTTGCTCAGGCTTACTAGGCGCCTCATCACGCACTGTAGATAGTT
GGTGTTCCGTGCTTAGTGCTGCATTTAGAGATGAAGTGTGCTGCTTCGCG
ATGGCTGGCGTCGAGCCAAGTCCCGGAGCCATGTCCTGCTGCACATATTC
ATGTACATATATATTATGTCCACCTACTCAACCCGGGCACGCACGCTAGT
CCCATCTGTGAGCCTCTTTTTCACCTGTAGTTGAAATAAGTTTCCTTCTC
TAATCTTCCCGCTCTTTGCTTTGCCGCCCCCCGAACTATCTCTTTCTCGC
TCTCCCTGTCTCAAGACGCCAGCCACAAACACACCGGCCGAGTGAGGTCC
CGAAGGCCGTTCATCCGTCCATCCTGAACTCATTCTCCACGGGGGCGGCC
GCGGCCACTGCTGCTAGCTAGCGCCAAAAGAGAGTGGCGATCGAGGGCAG
GAAAAGGAAAGAAGCATGCCGAGGAAGTGCTTACACCCAGGGTGCACCAA
GCGGCCGTCGTACGGCAACAGCGGCACCGGGAAGGCGGAGCTGTGCGCCC
CGCACGCGGAGGATGGGATGGTGGACGTCCGCCACAAGAGCAAGAGGTGC
AGCCACAGCGGCTGCGAGAAGCACCCGTCGTACGGCGTGATCGGGAGCAA
CAAGGCTGAGTTCTGCGCCCCGCACGCGAAGGCCGGGATGGCAAACGTCG
TCAGCAAGAGGTGCGCGCACGTCGACTGCGACAAGCAGGCTTCGTACGGC
AAGCTTGGAAGCCACAAGGTGGAGCTCTGCGCCGAGCACGCCGAGTACGG
CATGGTGAGCGTCCGAACCAAGAAGAGGTGCGCGCACAAGGACTGCAGCA
AGTGGCCATCGTTCGGCGTGTCCGGGAGCAAGAAGGCAGAGTTCTGCTCC
GAGCACGCCAAGGCCGGCATGGTGGACGTCTTCAACAAGCGGTGCTCCCA
CGTTGGCTGTAGCAAGCTGCCGACCCGCGGCCTGGCCGGGAGCAAGAAGA
GGGAGTTCTGCTCCCAGCACGCAAAGTCTGGCATGGTGAACGTCGTCAAC
AAGAGGTGCGCCCACGAGGGCTGCGGCAAGCTGCCGAGCTACGGCGTGGC
CGGCAGCAAGGAGAGGGAGTTTTGCCGCCCGCACGCCAAGAACGGCATGG
TGTGCGTCAAGAACGACAGGCGCCCCACCCCCATTGTCAGCACGGAGCCC
CCGTTCTCGCTGGCGGGCGACGGCGAGGTGGACCCGGACTTTGACGACGG
CGGCGGCTACGACGACGGCGGCTACGACGACCGCGGCTACGGCGACTACG
ACGACTACGAACCGGGCCGGGGCTACAGCAGGGGCAACGCCGCCCGCGAC
CGCGGCCGTGGCCCGAGGAAGGACAAGGAGAAGACGCTGGCGGCGAAGGC
TCTGAGGAACCTCGCGAGCATGCGCCCTGACGACCCGTTCTGGCTGGACG
GCAAGCTCCCGCCGCGCGCCCCTCGCAGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig974:8779..12107- >mRNA_L-elsbetiae_contig974.18707.1 ID=mRNA_L-elsbetiae_contig974.18707.1|Name=mRNA_L-elsbetiae_contig974.18707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2028bp|location=Sequence derived from alignment at L-elsbetiae_contig974:8779..12107- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGGAAGTGCTTACACCCAGGGTGCACCAAGCGGCCGTCGTACGG
CAACAGCGGCACCGGGAAGGCGGAGCTGTGCGCCCCGCACGCGGAGGATG
GGATGGTGGACGTCCGCCACAAGAGCAAGAGGTGCAGCCACAGCGGCTGC
GAGAAGCACCCGTCGTACGGCGTGATCGGGAGCAACAAGGCTGAGTTCTG
CGCCCCGCACGCGAAGGCCGGGATGGCAAACGTCGTCAGCAAGAGGTGCG
CGCACGTCGACTGCGACAAGCAGGCTTCGTACGGCAAGCTTGGAAGCCAC
AAGGTGGAGCTCTGCGCCGAGCACGCCGAGTACGGCATGGTGAGCGTCCG
AACCAAGAAGAGGTGCGCGCACAAGGACTGCAGCAAGTGGCCATCGTTCG
GCGTGTCCGGGAGCAAGAAGGCAGAGTTCTGCTCCGAGCACGCCAAGGCC
GGCATGGTGGACGTCTTCAACAAGCGGTGCTCCCACGTTGGCTGTAGCAA
GCTGCCGACCCGCGGCCTGGCCGGGAGCAAGAAGAGGGAGTTCTGCTCCC
AGCACGCAAAGTCTGGCATGGTGAACGTCGTCAACAAGAGGTGCGCCCAC
GAGGGCTGCGGCAAGCTGCCGAGCTACGGCGTGGCCGGCAGCAAGGAGAG
GGAGTTTTGCCGCCCGCACGCCAAGAACGGCATGGTGTGCGTCAAGAACG
ACAGGCGCCCCACCCCCATTGTCAGCACGGAGCCCCCGTTCTCGCTGGCG
GGCGACGGCGAGGTGGACCCGGACTTTGACGACGGCGGCGGCTACGACGA
CGGCGGCTACGACGACCGCGGCTACGGCGACTACGACGACTACGAACCGG
GCCGGGGCTACAGCAGGGGCAACGCCGCCCGCGACCGCGGCCGTGGCCCG
AGGAAGGACAAGGAGAAGACGCTGGCGGCGAAGGCTCTGAGGAACCTCGC
GAGCATGCGCCCTGACGACCCGTTCTGGCTGGACGGCAAGCTCCCGCCGC
GCGCCCCTCGCAGCATGCCGAGGAAGTGCTTACACCCAGGGTGCACCAAG
CGGCCGTCGTACGGCAACAGCGGCACCGGGAAGGCGGAGCTGTGCGCCCC
GCACGCGGAGGATGGGATGGTGGACGTCCGCCACAAGAGCAAGAGGTGCA
GCCACAGCGGCTGCGAGAAGCACCCGTCGTACGGCGTGATCGGGAGCAAC
AAGGCTGAGTTCTGCGCCCCGCACGCGAAGGCCGGGATGGCAAACGTCGT
CAGCAAGAGGTGCGCGCACGTCGACTGCGACAAGCAGGCTTCGTACGGCA
AGCTTGGAAGCCACAAGGTGGAGCTCTGCGCCGAGCACGCCGAGTACGGC
ATGGTGAGCGTCCGAACCAAGAAGAGGTGCGCGCACAAGGACTGCAGCAA
GTGGCCATCGTTCGGCGTGTCCGGGAGCAAGAAGGCAGAGTTCTGCTCCG
AGCACGCCAAGGCCGGCATGGTGGACGTCTTCAACAAGCGGTGCTCCCAC
GTTGGCTGTAGCAAGCTGCCGACCCGCGGCCTGGCCGGGAGCAAGAAGAG
GGAGTTCTGCTCCCAGCACGCAAAGTCTGGCATGGTGAACGTCGTCAACA
AGAGGTGCGCCCACGAGGGCTGCGGCAAGCTGCCGAGCTACGGCGTGGCC
GGCAGCAAGGAGAGGGAGTTTTGCCGCCCGCACGCCAAGAACGGCATGGT
GTGCGTCAAGAACGACAGGCGCCCCACCCCCATTGTCAGCACGGAGCCCC
CGTTCTCGCTGGCGGGCGACGGCGAGGTGGACCCGGACTTTGACGACGGC
GGCGGCTACGACGACGGCGGCTACGACGACCGCGGCTACGGCGACTACGA
CGACTACGAACCGGGCCGGGGCTACAGCAGGGGCAACGCCGCCCGCGACC
GCGGCCGTGGCCCGAGGAAGGACAAGGAGAAGACGCTGGCGGCGAAGGCT
CTGAGGAACCTCGCGAGCATGCGCCCTGACGACCCGTTCTGGCTGGACGG
CAAGCTCCCGCCGCGCGCCCCTCGCAGC back to top
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