mRNA_L-elsbetiae_contig9724.18698.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9724.18698.1
Unique NamemRNA_L-elsbetiae_contig9724.18698.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9724.18698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9724contigL-elsbetiae_contig9724:1712..2726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size298
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.5519853-CDS-L-elsbetiae_contig9724:1711..17551622817036.5519853-CDS-L-elsbetiae_contig9724:1711..1755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9724 1712..1755 +
1691683999.3035817-CDS-L-elsbetiae_contig9724:1711..17551691683999.3035817-CDS-L-elsbetiae_contig9724:1711..1755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9724 1712..1755 +
1622817036.562341-CDS-L-elsbetiae_contig9724:2473..27261622817036.562341-CDS-L-elsbetiae_contig9724:2473..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9724 2474..2726 +
1691683999.314021-CDS-L-elsbetiae_contig9724:2473..27261691683999.314021-CDS-L-elsbetiae_contig9724:2473..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9724 2474..2726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9724.18698.1prot_L-elsbetiae_contig9724.18698.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9724 1712..2726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9724.18698.1

>prot_L-elsbetiae_contig9724.18698.1 ID=prot_L-elsbetiae_contig9724.18698.1|Name=mRNA_L-elsbetiae_contig9724.18698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
GRLQTLALLRHQRQREKPRSRRLKKRPPVGFRGRKRRERIENPGKLGGDQ
AEGTGCSCGWQLCVAFLAERRGFAVVAGEPCLREQPFFETGRRGGAQI*
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mRNA from alignment at L-elsbetiae_contig9724:1712..2726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9724.18698.1 ID=mRNA_L-elsbetiae_contig9724.18698.1|Name=mRNA_L-elsbetiae_contig9724.18698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig9724:1712..2726+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCGCTTGCAGACTCTGGCCCTTCTGCGACACCAACGCCAACGGTGAGC
ACGCTGAACCGCAGCCTTGCGAGAGAAAGAGGCCTTCTTCCTCGCGTCTC
GTGCACCCTCGTGTTGCGTTCGTTCCCTTGATGAAAGGACGGATACAAAA
CAGGGACAGAGACGGGGAGAGGAACGAACACAGCAGCACGCAGCTGGTTT
TTTTCCTTGGGTGGTTGGTGCCTTCGCTCGTACGAACGCGCGTACACTTG
AAGCGGCGCACAGAACAAGAATGACCCTGGCAGCAAGTGGAAAGAAAAAA
ATCCTCTAATGTAGTCACGGTTGACACAGTAGGCGCCAGTAGAGAGGGTT
TAAATGTTGTTTTTCTACTCGGATGGCGTTATGTACACGAACTCAGGAGC
TCTCTCCGCTCACACTGGATCGGCTCAATCGAGGCGTAGCATGGGGCTGG
TTGGATTAGACACACGTTGCTGGGAAAACGGTGCGGGAAACTAGTCTTAA
ACGCCATCCAGCCCGTCATCCGATCATCCGGTAAAAAGTAAAAGTGACAG
CCCGCGTTTGCGTAGATCCGCCGCATCCGGCCTCCAAATATACGGGTGGC
CCCACACAGCGGCACCACAGGCATTTTCGCGTGCTATTTATGTAACATCG
CGCTAATCGTGTTCGCATGCGGAAGGCGACAACAGCAGTAGTTTCGTTAC
GCTTTGAAAATCAATCGCTTTCCTTCCCTTGCCACTTGCCACTTGCCACA
CGCAACCCGCAGAGAGAAACCACGATCTCGCCGCCTTAAAAAACGCCCGC
CGGTTGGGTTTCGAGGGAGAAAACGCCGAGAACGGATAGAAAACCCTGGG
AAGCTCGGCGGCGACCAAGCCGAAGGCACCGGTTGTTCCTGTGGCTGGCA
GCTTTGCGTTGCTTTTTTAGCAGAACGCCGCGGGTTTGCGGTTGTGGCTG
GAGAACCGTGCTTGCGGGAACAGCCTTTTTTCGAGACAGGGAGACGGGGG
GGGGCGCAGATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9724:1712..2726+

>mRNA_L-elsbetiae_contig9724.18698.1 ID=mRNA_L-elsbetiae_contig9724.18698.1|Name=mRNA_L-elsbetiae_contig9724.18698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig9724:1712..2726+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCGCTTGCAGACTCTGGCCCTTCTGCGACACCAACGCCAACGGGTCGC
TTGCAGACTCTGGCCCTTCTGCGACACCAACGCCAACGAGAGAAACCACG
ATCTCGCCGCCTTAAAAAACGCCCGCCGGTTGGGTTTCGAGGGAGAAAAC
GCCGAGAACGGATAGAAAACCCTGGGAAGCTCGGCGGCGACCAAGCCGAA
GGCACCGGTTGTTCCTGTGGCTGGCAGCTTTGCGTTGCTTTTTTAGCAGA
ACGCCGCGGGTTTGCGGTTGTGGCTGGAGAACCGTGCTTGCGGGAACAGC
CTTTTTTCGAGACAGGGAGACGGGGGGGGGCGCAGATATAAAGAGAAACC
ACGATCTCGCCGCCTTAAAAAACGCCCGCCGGTTGGGTTTCGAGGGAGAA
AACGCCGAGAACGGATAGAAAACCCTGGGAAGCTCGGCGGCGACCAAGCC
GAAGGCACCGGTTGTTCCTGTGGCTGGCAGCTTTGCGTTGCTTTTTTAGC
AGAACGCCGCGGGTTTGCGGTTGTGGCTGGAGAACCGTGCTTGCGGGAAC
AGCCTTTTTTCGAGACAGGGAGACGGGGGGGGGCGCAGATATAA
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