mRNA_L-elsbetiae_contig9720.18692.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9720.18692.1
Unique NamemRNA_L-elsbetiae_contig9720.18692.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9720.18692.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 104 bits (259), Expect = 3.840e-24
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    4 NNHKIGPGQPVLLVEQYCQPVCCTRRVFVSVLHIVPRMFDLERQLLCFVLHESLFLPALQASLYHRQP 207
            N H +   + VLL+EQY Q VC TR+VFVSV+HIVPRMFDLERQLLCFVLHE++FLPALQASL+HR P
Sbjct:  795 NKHGVQTTRAVLLLEQYTQVVCMTRQVFVSVMHIVPRMFDLERQLLCFVLHEAVFLPALQASLWHRCP 862
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BLAST of mRNA_L-elsbetiae_contig9720.18692.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.560e-14
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LNNHKIGPGQPVLLVEQYCQPVCCTRRVFVSVLH 102
            LNNHK+GPGQPVLLVEQYCQPVCCTRRVF+SVLH
Sbjct: 1556 LNNHKVGPGQPVLLVEQYCQPVCCTRRVFISVLH 1589
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BLAST of mRNA_L-elsbetiae_contig9720.18692.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.090e-12
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  103 IVPRMFDLERQLLCFVLHESLFLPALQASLYHRQP 207
            IVPRMFDLERQLLCFVLHESLFLPALQ SLYHR P
Sbjct: 1115 IVPRMFDLERQLLCFVLHESLFLPALQTSLYHRNP 1149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9720.18692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2S1PRV6_FUCSE3.840e-2473.53Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
A0A6H5KQM7_9PHAE1.560e-1494.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI3.090e-1294.29Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9720contigL-elsbetiae_contig9720:860..2876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.318992-CDS-L-elsbetiae_contig9720:859..9611622817036.318992-CDS-L-elsbetiae_contig9720:859..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9720 860..961 +
1691683999.1703417-CDS-L-elsbetiae_contig9720:859..9611691683999.1703417-CDS-L-elsbetiae_contig9720:859..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9720 860..961 +
1622817036.3304136-CDS-L-elsbetiae_contig9720:2716..28751622817036.3304136-CDS-L-elsbetiae_contig9720:2716..2875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9720 2717..2875 +
1691683999.1809824-CDS-L-elsbetiae_contig9720:2716..28751691683999.1809824-CDS-L-elsbetiae_contig9720:2716..2875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9720 2717..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9720.18692.1prot_L-elsbetiae_contig9720.18692.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9720 860..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9720.18692.1

>prot_L-elsbetiae_contig9720.18692.1 ID=prot_L-elsbetiae_contig9720.18692.1|Name=mRNA_L-elsbetiae_contig9720.18692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
LNNHKIGPGQPVLLVEQYCQPVCCTRRVFVSVLHIVPRMFDLERQLLCFV
LHESLFLPALQASLYHRQPSPHGAPNNTNTNTTTNSS
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mRNA from alignment at L-elsbetiae_contig9720:860..2876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9720.18692.1 ID=mRNA_L-elsbetiae_contig9720.18692.1|Name=mRNA_L-elsbetiae_contig9720.18692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2017bp|location=Sequence derived from alignment at L-elsbetiae_contig9720:860..2876+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACAACCACAAGATCGGGCCCGGGCAGCCGGTGCTGCTGGTGGAGCA
GTACTGCCAGCCGGTCTGCTGCACCCGGAGGGTGTTCGTCAGCGTGCTGC
ACGTGAGGAGTTGTTGGCGACAGTGCCGTTGTTGTCGTGGTAGTTGACAG
TCCCGTATTCGCCAGTGTGTGCTGTGTGCTGCGCGCGAGTTGTTTGTTGG
TGACAGTCCTGTTCTCGTTGTCGACAGTCCCGTGTTCGCCAGTGTGTGCT
GTGTGCTGTGTGCCACACGTAAGTTGTCGGTGACAGTCCCGTTGCTGCCG
TAGTTAACAGTCTCGTGTTCGCCAGCATGCCGCACGTGAGTGTGGGTGTG
GGTGTGGGTGTTGTTTTTGTTGTTGTTGTCGTGCTCTTTTACGAACGATG
AACAAGCGACCACCGCCGCTTGCAAAATGAAATACTCGGCCGGCCCTATA
TTACGTCACTCTATGGAATACCGGTTGAACCGCACGGAGTCCCATCTCAA
TGTGGGTTAGGTTCCGTCTTGATTGCAATATCTGATTTATCTTTCGAAAT
GGTTTTACTCAAAAACGTCACCCGTCCACGTCCAACCCTCGAAACTTTTC
CTTCTAGGGGGCCTGCTGTTGGAGACATACCAACAACCCTCCCTTTGTTG
CCGTGCCCCCCCCGACTACAGTATTTTTCATTTCCCTTCTTGTTTGGCAA
TAAACATCAGCAGTATACATACGCAGGAGGGGTCCAGCCCCCCCTCCTGT
GTGACCCCGGTTGGGTCGTCCAGCTAGTCGTAGTGGAGGAAGGGGGCCAG
TGGGGCAGAAGACAAATTTGCCAATGACAGGCTAAAAACAAAAAGCATTT
CGTCGCCTATGTAGCACCAATCCCAAAAACGTACCACCAATGAAAAATGT
TTCGTCGCCTAGCACCTGGCCGTGCATTGGTTAGTAGTGAACGGGGGCGC
TTTAGTCGAATGGAGGTTTGTGGATGCGGTGGTTCAATGCAACAGGACAC
ATGGAAGTTGTTTTTGCCGGAAAATAGATGTGTCTCGTCGGCCTTTGTTT
ACCCTTCCGATGTATGTACCGTAGGTGACACAAGATACCACACCGCCTGG
ACCGAATTTTAGAGCTCCATTACTCCGTAATGAAGGTGCCAGCACCGAAC
AAAACATTTTCGGACAGCCCTCGGCTAGATCTTTCCAACGCTACCCTTTT
TGGCACTTAGCACTCTTCTTGCTGGGGAGGAATCGAGCTTCGAAAATCTG
CCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATGTACGTGTGTCCCC
TTTCGGATCTGTGGTGGCTCCAGCACGTTTGTGACGGCCACGGGCCGGCG
TATTCTTGGGATACAGCTAATGTGAGAAGCAGCAGCAACAACAGTAACAA
CAACAACAACAGTATCAACAGCAGCAGCAACAACAACAGTAACAACAACA
ACAACGGTACTGTCAACGGGACCATCAAAGAGACTGTCGACGGGACTATC
AACGGGACTGACAACGGGACTGTCAACGGGACTGTCAACGGGACTGTCAG
CAGCAACAACCAACCCGGCCGGATGCCCCCGATGAGGCTCGGAAACTCAC
TTTCACCTTTTCGCTTTCGTGCTCAGCTTCCCACCCCTATCCCGTGCTGC
CGCACGCCGCCCTTACCCCCCCCCCCCCCCCCCCCTTCTTTCCCGCCGCG
CCCCCCGTGTGTCCCCCCCCGCGCCCCCCCCCNNNNNNNNNNCCCCCGTG
GGGCTCGGAAACCCCCTTTCCCCTTTTCCCTTTCGTGCCCAGCTTCCCCC
CCCCCCCCCGGGCTGCCGCCCCCCGCCTTCCCCCCCCCCCCCCCCGTTTA
TTTACAGATCGTGCCGCGTATGTTCGACCTAGAGCGCCAGCTCCTCTGCT
TCGTCCTGCACGAGTCTCTCTTCCTGCCGGCGCTCCAGGCCTCACTCTAC
CACCGCCAGCCCTCGCCCCACGGCGCCCCCAACAACACCAACACCAACAC
CACCACCAACAGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9720:860..2876+

>mRNA_L-elsbetiae_contig9720.18692.1 ID=mRNA_L-elsbetiae_contig9720.18692.1|Name=mRNA_L-elsbetiae_contig9720.18692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig9720:860..2876+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACAACCACAAGATCGGGCCCGGGCAGCCGGTGCTGCTGGTGGAGCA
GTACTGCCAGCCGGTCTGCTGCACCCGGAGGGTGTTCGTCAGCGTGCTGC
ACCTCAACAACCACAAGATCGGGCCCGGGCAGCCGGTGCTGCTGGTGGAG
CAGTACTGCCAGCCGGTCTGCTGCACCCGGAGGGTGTTCGTCAGCGTGCT
GCACATCGTGCCGCGTATGTTCGACCTAGAGCGCCAGCTCCTCTGCTTCG
TCCTGCACGAGTCTCTCTTCCTGCCGGCGCTCCAGGCCTCACTCTACCAC
CGCCAGCCCTCGCCCCACGGCGCCCCCAACAACACCAACACCAACACCAC
CACCAACAGCAGCATCGTGCCGCGTATGTTCGACCTAGAGCGCCAGCTCC
TCTGCTTCGTCCTGCACGAGTCTCTCTTCCTGCCGGCGCTCCAGGCCTCA
CTCTACCACCGCCAGCCCTCGCCCCACGGCGCCCCCAACAACACCAACAC
CAACACCACCACCAACAGCAGC
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