mRNA_L-elsbetiae_contig9719.18690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9719.18690.1
Unique NamemRNA_L-elsbetiae_contig9719.18690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9719.18690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9719contigL-elsbetiae_contig9719:3380..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size417
Cds size333
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.0785828-UTR-L-elsbetiae_contig9719:3379..34631622817036.0785828-UTR-L-elsbetiae_contig9719:3379..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9719 3380..3463 +
1691683999.0089989-UTR-L-elsbetiae_contig9719:3379..34631691683999.0089989-UTR-L-elsbetiae_contig9719:3379..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9719 3380..3463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.0905275-CDS-L-elsbetiae_contig9719:3463..37961622817036.0905275-CDS-L-elsbetiae_contig9719:3463..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9719 3464..3796 +
1691683999.019738-CDS-L-elsbetiae_contig9719:3463..37961691683999.019738-CDS-L-elsbetiae_contig9719:3463..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9719 3464..3796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9719.18690.1prot_L-elsbetiae_contig9719.18690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9719 3464..3796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9719.18690.1

>prot_L-elsbetiae_contig9719.18690.1 ID=prot_L-elsbetiae_contig9719.18690.1|Name=mRNA_L-elsbetiae_contig9719.18690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MLCFVIREARCARRRKEARSRRAQSGMVVGRWVAVVVGVLCCFLLLLHRS
SGSPAESLFFEKKCAGHRNRSNSRKGCRNTENHHCSASFTILIGIGGFAL
FWINKAETDL*
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mRNA from alignment at L-elsbetiae_contig9719:3380..3796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9719.18690.1 ID=mRNA_L-elsbetiae_contig9719.18690.1|Name=mRNA_L-elsbetiae_contig9719.18690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=417bp|location=Sequence derived from alignment at L-elsbetiae_contig9719:3380..3796+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGCATTCGCACCTGTGAGTTGAGGAACAACACAACAAAATGAAATTT
GACAAAAATTAAAATTGACACGTCCCGCCCAGAGATGTTGTGCTTCGTGA
TTAGGGAGGCGCGCTGCGCTAGAAGAAGGAAGGAGGCACGGAGTAGGCGT
GCTCAGTCAGGGATGGTCGTTGGTCGTTGGGTTGCGGTTGTTGTTGGTGT
TTTGTGCTGTTTTTTGTTGCTGTTGCACCGTTCCTCAGGCTCACCGGCAG
AGTCGCTCTTTTTCGAAAAAAAGTGCGCAGGTCATCGAAACAGGTCCAAC
AGCCGCAAGGGCTGTCGAAACACTGAAAACCATCACTGCTCTGCCAGCTT
TACCATCCTCATCGGAATCGGTGGGTTTGCCTTGTTTTGGATAAACAAAG
CGGAGACTGACCTATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9719:3380..3796+

>mRNA_L-elsbetiae_contig9719.18690.1 ID=mRNA_L-elsbetiae_contig9719.18690.1|Name=mRNA_L-elsbetiae_contig9719.18690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig9719:3380..3796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTGCTTCGTGATTAGGGAGGCGCGCTGCGCTAGAAGAAGGAAGGA
GGCACGGAGTAGGCGTGCTCAGTCAGGGATGGTCGTTGGTCGTTGGGTTG
CGGTTGTTGTTGGTGTTTTGTGCTGTTTTTTGTTGCTGTTGCACCGTTCC
TCAGGCTCACCGGCAGAGTCGCTCTTTTTCGAAAAAAAGTGCGCAGGTCA
TCGAAACAGGTCCAACAGCCGCAAGGGCTGTCGAAACACTGAAAACCATC
ACTGCTCTGCCAGCTTTACCATCCTCATCGGAATCGGTGGGTTTGCCTTG
TTTTGGATAAACAAAGCGGAGACTGACCTATAGATGTTGTGCTTCGTGAT
TAGGGAGGCGCGCTGCGCTAGAAGAAGGAAGGAGGCACGGAGTAGGCGTG
CTCAGTCAGGGATGGTCGTTGGTCGTTGGGTTGCGGTTGTTGTTGGTGTT
TTGTGCTGTTTTTTGTTGCTGTTGCACCGTTCCTCAGGCTCACCGGCAGA
GTCGCTCTTTTTCGAAAAAAAGTGCGCAGGTCATCGAAACAGGTCCAACA
GCCGCAAGGGCTGTCGAAACACTGAAAACCATCACTGCTCTGCCAGCTTT
ACCATCCTCATCGGAATCGGTGGGTTTGCCTTGTTTTGGATAAACAAAGC
GGAGACTGACCTATAG
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