mRNA_L-elsbetiae_contig9718.18688.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9718.18688.1
Unique NamemRNA_L-elsbetiae_contig9718.18688.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9718.18688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9718contigL-elsbetiae_contig9718:3834..4285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9718.18688.1prot_L-elsbetiae_contig9718.18688.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9718 3886..4188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.0234425-UTR-L-elsbetiae_contig9718:3833..38851622817036.0234425-UTR-L-elsbetiae_contig9718:3833..3885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9718 3834..3885 +
1691683998.9738216-UTR-L-elsbetiae_contig9718:3833..38851691683998.9738216-UTR-L-elsbetiae_contig9718:3833..3885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9718 3834..3885 +
1622817036.0459905-UTR-L-elsbetiae_contig9718:4188..42851622817036.0459905-UTR-L-elsbetiae_contig9718:4188..4285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9718 4189..4285 +
1691683998.9988842-UTR-L-elsbetiae_contig9718:4188..42851691683998.9988842-UTR-L-elsbetiae_contig9718:4188..4285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9718 4189..4285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.0351048-CDS-L-elsbetiae_contig9718:3885..41881622817036.0351048-CDS-L-elsbetiae_contig9718:3885..4188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9718 3886..4188 +
1691683998.9857254-CDS-L-elsbetiae_contig9718:3885..41881691683998.9857254-CDS-L-elsbetiae_contig9718:3885..4188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9718 3886..4188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9718.18688.1

>prot_L-elsbetiae_contig9718.18688.1 ID=prot_L-elsbetiae_contig9718.18688.1|Name=mRNA_L-elsbetiae_contig9718.18688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MGRTHTHIQMSAVYVQSMKKSFQRDCCRRTNPLFPHPRSIRTKSVVQLKT
GNYVTLVIRTHTHTHARARARAYRALFSSLLLPACLPACPPCDGICFVSA
*
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mRNA from alignment at L-elsbetiae_contig9718:3834..4285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9718.18688.1 ID=mRNA_L-elsbetiae_contig9718.18688.1|Name=mRNA_L-elsbetiae_contig9718.18688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig9718:3834..4285+ (Laminarionema elsbetiae ELsaHSoW15)
GTACACCGCAAGGTGTAGTACACGTCTGCACTTGGGACTGTCGCCAAAAT
AAATGGGAAGGACACACACACACATACAAATGTCAGCAGTCTACGTCCAG
TCTATGAAGAAGTCGTTCCAGAGGGACTGTTGTCGGCGTACTAACCCCCT
GTTTCCCCATCCCAGATCTATTCGCACAAAATCCGTGGTTCAATTAAAAA
CCGGTAATTATGTCACCCTCGTAATACGTACGCACACGCACACACACGCG
CGCGCGCGCGCGCGCGCGTACCGCGCCTTGTTTTCTTCGTTGCTTCTGCC
TGCCTGCCTGCCTGCCTGCCCGCCGTGCGACGGCATATGTTTTGTTTCTG
CTTAAAAATATACCACCCCGACCGGCCGCAGGACTGCTGGCGTCCTTCAG
TTTCACGCTCCTGTTCAGCACCTTCAGCCTGGTCGCGGGCCGTGCCGTGG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9718:3834..4285+

>mRNA_L-elsbetiae_contig9718.18688.1 ID=mRNA_L-elsbetiae_contig9718.18688.1|Name=mRNA_L-elsbetiae_contig9718.18688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig9718:3834..4285+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGGACACACACACACATACAAATGTCAGCAGTCTACGTCCAGTC
TATGAAGAAGTCGTTCCAGAGGGACTGTTGTCGGCGTACTAACCCCCTGT
TTCCCCATCCCAGATCTATTCGCACAAAATCCGTGGTTCAATTAAAAACC
GGTAATTATGTCACCCTCGTAATACGTACGCACACGCACACACACGCGCG
CGCGCGCGCGCGCGCGTACCGCGCCTTGTTTTCTTCGTTGCTTCTGCCTG
CCTGCCTGCCTGCCTGCCCGCCGTGCGACGGCATATGTTTTGTTTCTGCT
TAAATGGGAAGGACACACACACACATACAAATGTCAGCAGTCTACGTCCA
GTCTATGAAGAAGTCGTTCCAGAGGGACTGTTGTCGGCGTACTAACCCCC
TGTTTCCCCATCCCAGATCTATTCGCACAAAATCCGTGGTTCAATTAAAA
ACCGGTAATTATGTCACCCTCGTAATACGTACGCACACGCACACACACGC
GCGCGCGCGCGCGCGCGCGTACCGCGCCTTGTTTTCTTCGTTGCTTCTGC
CTGCCTGCCTGCCTGCCTGCCCGCCGTGCGACGGCATATGTTTTGTTTCT
GCTTAA
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