mRNA_L-elsbetiae_contig9717.18687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9717.18687.1
Unique NamemRNA_L-elsbetiae_contig9717.18687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9717.18687.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.620e-15
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:  559 SPSSKPTSPLTCGPRISSPSVSPGGPRDR-KASSQPPPATLPELPRFNLAGGGSGGAKQEGWGAPTAPTPSTAQEA 783
            SP SKPTSPLTCGPR+S    +PGG   + KASS+PP ++LPELP FN      G   QEGWGAPTAPTPSTAQEA
Sbjct: 1434 SPVSKPTSPLTCGPRLSPGQSTPGGGXXKGKASSKPPSSSLPELPVFN-----HGDGPQEGWGAPTAPTPSTAQEA 1504
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9717.18687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLN8_9PHAE6.620e-1565.79RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9717contigL-elsbetiae_contig9717:884..2021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1122
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9717.18687.1prot_L-elsbetiae_contig9717.18687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9717 897..1764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.9498658-UTR-L-elsbetiae_contig9717:883..8961622817035.9498658-UTR-L-elsbetiae_contig9717:883..896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9717 884..896 +
1691683998.922261-UTR-L-elsbetiae_contig9717:883..8961691683998.922261-UTR-L-elsbetiae_contig9717:883..896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9717 884..896 +
1622817035.9908292-UTR-L-elsbetiae_contig9717:1764..20211622817035.9908292-UTR-L-elsbetiae_contig9717:1764..2021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9717 1765..2021 +
1691683998.9602497-UTR-L-elsbetiae_contig9717:1764..20211691683998.9602497-UTR-L-elsbetiae_contig9717:1764..2021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9717 1765..2021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.9628646-CDS-L-elsbetiae_contig9717:896..14201622817035.9628646-CDS-L-elsbetiae_contig9717:896..1420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9717 897..1420 +
1691683998.9327953-CDS-L-elsbetiae_contig9717:896..14201691683998.9327953-CDS-L-elsbetiae_contig9717:896..1420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9717 897..1420 +
1622817035.9750488-CDS-L-elsbetiae_contig9717:1436..17641622817035.9750488-CDS-L-elsbetiae_contig9717:1436..1764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9717 1437..1764 +
1691683998.9442556-CDS-L-elsbetiae_contig9717:1436..17641691683998.9442556-CDS-L-elsbetiae_contig9717:1436..1764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9717 1437..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9717.18687.1

>prot_L-elsbetiae_contig9717.18687.1 ID=prot_L-elsbetiae_contig9717.18687.1|Name=mRNA_L-elsbetiae_contig9717.18687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MSDRDQYEREQMEAVHRRGGHRYHHHHHERQQRAREEDGAGERQHRRGDG
GGRGGRFRGREDRGDDDFPGDMTEEEYDEEIGEEDDVDDGYYEEDRGVGR
TAAKRELRSAAVRAGTYSRHRSDSSPPPSPPPQQQQQQKCKQQSPPDEEP
AAQRAAGGSRSSPSSPSPAAAKRSDSSSSKARRRPASRRRRSRADRGFPR
RASRPAAPGTARRPRSPPRPRSRNSRGLTWRAAAAAALSRKGGERLQRRR
RRPLRRRDGSVVCAACRVCTRGWNGRRRRRQRV*
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mRNA from alignment at L-elsbetiae_contig9717:884..2021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9717.18687.1 ID=mRNA_L-elsbetiae_contig9717.18687.1|Name=mRNA_L-elsbetiae_contig9717.18687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1138bp|location=Sequence derived from alignment at L-elsbetiae_contig9717:884..2021+ (Laminarionema elsbetiae ELsaHSoW15)
CGACGGGGCGTCGATGAGCGACCGGGACCAGTACGAGCGAGAGCAGATGG
AGGCCGTGCATCGCCGGGGCGGGCACCGGTACCACCACCACCACCACGAG
CGGCAACAACGGGCGAGAGAGGAGGACGGGGCCGGGGAGCGGCAGCACCG
GCGCGGTGACGGCGGTGGAAGGGGCGGCAGGTTCAGGGGGAGGGAAGACC
GAGGAGACGACGACTTCCCCGGCGACATGACCGAGGAGGAATACGACGAA
GAAATCGGAGAGGAGGACGATGTTGACGACGGATACTACGAGGAGGACCG
GGGGGTGGGCAGAACGGCCGCCAAGCGGGAGCTCCGCTCCGCCGCCGTCC
GTGCGGGAACCTACTCTCGGCACCGCTCGGATTCTTCGCCGCCGCCGTCG
CCGCCGCCGCAGCAGCAGCAGCAGCAGAAGTGTAAGCAGCAGTCCCCGCC
CGACGAGGAACCGGCGGCGCAGCGCGCGGCAGGAGGCTCACGCTCCTCCC
CCTCTTCGCCGTCTCCGGCAGCAGCGAAGCGGTCTGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAAGGCTCGTCGCCGTCCAGCAAGCCGACGTCGCC
GCTCACGTGCGGACCGAGGATTTCCTCGCCGAGCGTCTCGCCCGGCGGCC
CCAGGGACCGCAAGGCGTCCTCGCAGCCCCCCCCGGCCACGCTCCCGGAA
CTCCCGAGGTTTAACCTGGCGGGCGGCGGCAGCGGCGGCGCTAAGCAGGA
AGGGTGGGGAGCGCCTACAGCGCCGACGCCGTCGACCGCTCAGGAGGCGT
GATGGATCGGTGGTGTGTGCTGCGTGCCGTGTGTGCACGCGCGGATGGAA
TGGGCGGCGGCGGCGGCGGCAGCGTGTGTAGTTTTGGTCTTGATGTTCAT
CCGCGTCCATGTCTTGGGGGGTCTCTTTGTTAAGGGAGGTGCAGTACATA
GGTGTATTTGCCTCTCGTGTTTGGCCTTCGTTGGCACGGAGAAACATTTC
GGGAGAGCTAATTACATAAAAAACGCTGCATTAATTCCCTGCCCCGTCTC
GCAAGTCAAATATTTTGGTGCGGGGAGGGTGGGCGAGCCCGGGTGGGCGG
GCGGGCCCCCCGGGCTGCGTGCTGAGTTGAAACCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9717:884..2021+

>mRNA_L-elsbetiae_contig9717.18687.1 ID=mRNA_L-elsbetiae_contig9717.18687.1|Name=mRNA_L-elsbetiae_contig9717.18687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig9717:884..2021+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGACCGGGACCAGTACGAGCGAGAGCAGATGGAGGCCGTGCATCG
CCGGGGCGGGCACCGGTACCACCACCACCACCACGAGCGGCAACAACGGG
CGAGAGAGGAGGACGGGGCCGGGGAGCGGCAGCACCGGCGCGGTGACGGC
GGTGGAAGGGGCGGCAGGTTCAGGGGGAGGGAAGACCGAGGAGACGACGA
CTTCCCCGGCGACATGACCGAGGAGGAATACGACGAAGAAATCGGAGAGG
AGGACGATGTTGACGACGGATACTACGAGGAGGACCGGGGGGTGGGCAGA
ACGGCCGCCAAGCGGGAGCTCCGCTCCGCCGCCGTCCGTGCGGGAACCTA
CTCTCGGCACCGCTCGGATTCTTCGCCGCCGCCGTCGCCGCCGCCGCAGC
AGCAGCAGCAGCAGAAGTGTAAGCAGCAGTCCCCGCCCGACGAGGAACCG
GCGGCGCAGCGCGCGGCAGGAGGCTCACGCTCCTCCCCCTCTTCGCCGTC
TCCGGCAGCAGCGAAGCGGTCTGAATGAGCGACCGGGACCAGTACGAGCG
AGAGCAGATGGAGGCCGTGCATCGCCGGGGCGGGCACCGGTACCACCACC
ACCACCACGAGCGGCAACAACGGGCGAGAGAGGAGGACGGGGCCGGGGAG
CGGCAGCACCGGCGCGGTGACGGCGGTGGAAGGGGCGGCAGGTTCAGGGG
GAGGGAAGACCGAGGAGACGACGACTTCCCCGGCGACATGACCGAGGAGG
AATACGACGAAGAAATCGGAGAGGAGGACGATGTTGACGACGGATACTAC
GAGGAGGACCGGGGGGTGGGCAGAACGGCCGCCAAGCGGGAGCTCCGCTC
CGCCGCCGTCCGTGCGGGAACCTACTCTCGGCACCGCTCGGATTCTTCGC
CGCCGCCGTCGCCGCCGCCGCAGCAGCAGCAGCAGCAGAAGTGTAAGCAG
CAGTCCCCGCCCGACGAGGAACCGGCGGCGCAGCGCGCGGCAGGAGGCTC
ACGCTCCTCCCCCTCTTCGCCGTCTCCGGCAGCAGCGAAGCGGTCTGACA
GCAGCAGCAGCAAGGCTCGTCGCCGTCCAGCAAGCCGACGTCGCCGCTCA
CGTGCGGACCGAGGATTTCCTCGCCGAGCGTCTCGCCCGGCGGCCCCAGG
GACCGCAAGGCGTCCTCGCAGCCCCCCCCGGCCACGCTCCCGGAACTCCC
GAGGTTTAACCTGGCGGGCGGCGGCAGCGGCGGCGCTAAGCAGGAAGGGT
GGGGAGCGCCTACAGCGCCGACGCCGTCGACCGCTCAGGAGGCGTGATGG
ATCGGTGGTGTGTGCTGCGTGCCGTGTGTGCACGCGCGGATGGAATGGGC
GGCGGCGGCGGCGGCAGCGTGTGTAGCAGCAGCAGCAGCAAGGCTCGTCG
CCGTCCAGCAAGCCGACGTCGCCGCTCACGTGCGGACCGAGGATTTCCTC
GCCGAGCGTCTCGCCCGGCGGCCCCAGGGACCGCAAGGCGTCCTCGCAGC
CCCCCCCGGCCACGCTCCCGGAACTCCCGAGGTTTAACCTGGCGGGCGGC
GGCAGCGGCGGCGCTAAGCAGGAAGGGTGGGGAGCGCCTACAGCGCCGAC
GCCGTCGACCGCTCAGGAGGCGTGATGGATCGGTGGTGTGTGCTGCGTGC
CGTGTGTGCACGCGCGGATGGAATGGGCGGCGGCGGCGGCGGCAGCGTGT
GTAG
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