mRNA_L-elsbetiae_contig9713.18685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9713.18685.1
Unique NamemRNA_L-elsbetiae_contig9713.18685.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: D7FU84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU84_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.830e-32
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 MPGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATLSAQR 192
            MPGARD+RDSIDVLHEISTILDTGLDRKTLSLLLEL ESGVNPEALAAVVKELRREAATLS QR
Sbjct:    1 MPGARDMRDSIDVLHEISTILDTGLDRKTLSLLLELIESGVNPEALAAVVKELRREAATLSRQR 64
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A397UZH9_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UZH9_9GLOM)

HSP 1 Score: 79.7 bits (195), Expect = 2.110e-18
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 PGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAA 174
            P  ++ ++++D+LHEISTIL+TGLDR TLSL L L E+GVNPEALAAV+KELRRE+A
Sbjct:    4 PKIQEAKETMDILHEISTILNTGLDRDTLSLCLSLCENGVNPEALAAVIKELRRESA 60
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: U9SU00_RHIID (Mitotic-spindle organizing protein 1 n=2 Tax=Rhizophagus TaxID=1129544 RepID=U9SU00_RHIID)

HSP 1 Score: 76.6 bits (187), Expect = 3.870e-17
Identity = 37/59 (62.71%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    4 PGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATL 180
            P  ++  +++D+LHE+ST+L+TGLDR TLSL L L E+GVNPEALAAV+KELRRE+ +L
Sbjct:    4 PKIQEAIETLDILHEMSTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELRRESVSL 62
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A2Z6SAA0_9GLOM (Mitotic-spindle organizing protein 1 n=5 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6SAA0_9GLOM)

HSP 1 Score: 76.3 bits (186), Expect = 1.610e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 PGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRRE 168
            P  ++  +++D+LHEIST+L+TGLDR TLSL L L E+GVNPEALAAV+KELRRE
Sbjct:    4 PKIQEAIETLDILHEISTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELRRE 58
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A397T979_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T979_9GLOM)

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-16
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    4 PGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATL 180
            P  ++  +++D+LHEIST+L+TGLDR TLS+ L L E+GVNPEALAAV+KELRRE  +L
Sbjct:    4 PKIQEAIETLDILHEISTLLNTGLDRDTLSICLNLCENGVNPEALAAVIKELRRENVSL 62
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A0M0JFJ5_9EUKA (Mitotic-spindle organizing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ5_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 3.320e-16
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 MPGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATLSA 186
            M   R   +++DVL++IS +L TGLDR+TL++L+ LTESGVNPEALAAV+KELRRE A L A
Sbjct:    1 MAAERPREETLDVLYDISQLLQTGLDRETLAVLVGLTESGVNPEALAAVIKELRRETAALRA 62
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A0L0H5X0_SPIPD (Mitotic-spindle organizing protein 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5X0_SPIPD)

HSP 1 Score: 73.6 bits (179), Expect = 6.580e-16
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   13 RDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATL 180
            ++ R+++D+LHEIS IL+T LDR+TLSL + L ESGVNPEALAAV+KEL+RE+  L
Sbjct:    6 QEARETMDILHEISRILNTSLDRETLSLCVSLCESGVNPEALAAVIKELKRESRAL 61
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A2GDL6_TRIVA (Uncharacterized protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2GDL6_TRIVA)

HSP 1 Score: 73.6 bits (179), Expect = 6.580e-16
Identity = 35/46 (76.09%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   31 IDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRRE 168
            +D LHE+S IL+TGLDR+TLS+LLELTE+GVNPEALAA+VKELR++
Sbjct:    9 LDSLHELSNILETGLDRETLSILLELTEAGVNPEALAALVKELRKQ 54
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: A0A388L457_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L457_CHABU)

HSP 1 Score: 73.9 bits (180), Expect = 7.780e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   22 RDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATLSA 186
            R+++D+ +EIS +L+TGLDR  LS+L+ L E+GVNPEALAAVVKELRREAA L A
Sbjct:   10 RETLDIAYEISKVLNTGLDRDMLSILISLCENGVNPEALAAVVKELRREAAALQA 64
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BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Match: W7I0I8_9PEZI (Mitotic-spindle organizing protein 1 n=1 Tax=Drechslerella stenobrocha 248 TaxID=1043628 RepID=W7I0I8_9PEZI)

HSP 1 Score: 73.6 bits (179), Expect = 8.080e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 GARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVVKELRREAATL 180
            G+   R  ID+LHEIST+L+T LDR TLSL + L E+GVNPEALAAV+KELRRE+  L
Sbjct:   14 GSSAARQVIDILHEISTLLNTKLDRTTLSLCVSLIENGVNPEALAAVIKELRRESTRL 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9713.18685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU84_ECTSI5.830e-3295.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A397UZH9_9GLOM2.110e-1868.42Mitotic-spindle organizing protein 1 n=1 Tax=Gigas... [more]
U9SU00_RHIID3.870e-1762.71Mitotic-spindle organizing protein 1 n=2 Tax=Rhizo... [more]
A0A2Z6SAA0_9GLOM1.610e-1667.27Mitotic-spindle organizing protein 1 n=5 Tax=Rhizo... [more]
A0A397T979_9GLOM1.900e-1662.71Mitotic-spindle organizing protein 1 n=1 Tax=Glomu... [more]
A0A0M0JFJ5_9EUKA3.320e-1662.90Mitotic-spindle organizing protein 1 n=1 Tax=Chrys... [more]
A0A0L0H5X0_SPIPD6.580e-1664.29Mitotic-spindle organizing protein 1 n=2 Tax=Spize... [more]
A2GDL6_TRIVA6.580e-1676.09Uncharacterized protein n=1 Tax=Trichomonas vagina... [more]
A0A388L457_CHABU7.780e-1667.27Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
W7I0I8_9PEZI8.080e-1665.52Mitotic-spindle organizing protein 1 n=1 Tax=Drech... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9713contigL-elsbetiae_contig9713:1602..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9e-24
Seed eggNOG ortholog2880.D7FU84
Preferred nameMZT1
KEGG koko:K18633
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000923,GO:0000928,GO:0000930,GO:0000931,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008104,GO:0008150,GO:0008274,GO:0008275,GO:0009524,GO:0009574,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031021,GO:0031055,GO:0031090,GO:0031109,GO:0031497,GO:0031503,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0032153,GO:0032155,GO:0032991,GO:0033036,GO:0033566,GO:0034080,GO:0034508,GO:0034613,GO:0034622,GO:0034629,GO:0034724,GO:0034728,GO:0042175,GO:0042393,GO:0043015,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0046785,GO:0048285,GO:0051179,GO:0051225,GO:0051258,GO:0051276,GO:0051415,GO:0051417,GO:0051418,GO:0051641,GO:0061495,GO:0061497,GO:0061641,GO:0065003,GO:0065004,GO:0070727,GO:0070925,GO:0071103,GO:0071824,GO:0071840,GO:0072686,GO:0090307,GO:0097435,GO:0098588,GO:0098687,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.organizing protein
EggNOG OGs2CYW9@1,2S6UI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Ec32 ortholog descriptionProtein of unknown function DUF3743
Ec32 orthologEc-25_003110.1
Exons2
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.8656132-CDS-L-elsbetiae_contig9713:1601..16381622817035.8656132-CDS-L-elsbetiae_contig9713:1601..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9713 1602..1638 +
1691683998.8754377-CDS-L-elsbetiae_contig9713:1601..16381691683998.8754377-CDS-L-elsbetiae_contig9713:1601..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9713 1602..1638 +
1622817035.878417-CDS-L-elsbetiae_contig9713:3569..37271622817035.878417-CDS-L-elsbetiae_contig9713:3569..3727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9713 3570..3727 +
1691683998.8946998-CDS-L-elsbetiae_contig9713:3569..37271691683998.8946998-CDS-L-elsbetiae_contig9713:3569..3727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9713 3570..3727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9713.18685.1prot_L-elsbetiae_contig9713.18685.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9713 1602..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9713.18685.1

>prot_L-elsbetiae_contig9713.18685.1 ID=prot_L-elsbetiae_contig9713.18685.1|Name=mRNA_L-elsbetiae_contig9713.18685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MPGARDVRDSIDVLHEISTILDTGLDRKTLSLLLELTESGVNPEALAAVV
KELRREAATLSAQR*
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mRNA from alignment at L-elsbetiae_contig9713:1602..3727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9713.18685.1 ID=mRNA_L-elsbetiae_contig9713.18685.1|Name=mRNA_L-elsbetiae_contig9713.18685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2126bp|location=Sequence derived from alignment at L-elsbetiae_contig9713:1602..3727+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGTGCAAGAGATGTGCGAGATTCTATCGACGGTATGATCGGGTC
TGTCTTCACCCTGTGATACCGATGCTGACGAGAAAGCTTCCTTACATACC
AACATATGTATTTCAAATCGACAAATCGACGTATGTACAAACAGGGAGTA
AACTTGGGTGCACTGAGTAGTATTGTAGCAGTATCTAGTAGTACATCAGA
GTAGTACCGGTGTCTTTAGCTGCGAGGACGTTGTATATTTCGTTGGACAG
GGTATGTAGTCCTTTGTCTCCTGCACTGCTGCGGATCACGCTTTGTGTAT
TTCGCTGAAATTGATGAACAACAGTAGTAGTCCACTACATATGTACTAAC
TTGTGTACCGTAGGTGACACAAGATACCACACCCCCTGGACATATTTTGA
AAGCTCGATCCCTCCCCAACAAGGAAGAGTGCCAGTGCCGAAAGGGGACG
GTGTTGAAAATATCAAGTCCAGCGCTGTCCAAAAATATGTCGTTTGGTGC
TGGCATCCTCTTCGTTGCGGAGCAATGGAGCTCTAAAATTCGGTCGAGGG
GGTGTGGTATCTTGCTTGTGTCACCTACGGTATCTGTAACAGCCTCTCGG
AGAGTTCTGCGCACCAACACCGCGAATCCTTTGTGTATACGGCAGGTACA
TACATAAATATGCATACTCCTATGTAGATACGTCGATGAACAAAGTACAC
GCCTCATACTGCGTCCTTGTCATCTGCTTCGAAATTCTTGGGATTTCCTC
GGGAGCACATTGGGAAGGAGACACAGCAGGGGGTGTTCATGATTGCCGGA
TCCTGGTTCTTCCGCCCTAACCCTGATGCTGCTGTAGTCTGTACAGAGAG
TTGACTGCTTGTAGTCGGCGAAATCAATCTGGCTACTGCACCCTTGAATG
CTTAACCCTTTTAGTACTGGCCGCCCGTTTGGCGACGATTTGGTGACACA
TAACTTTGGGCTAGTGTTCTTGAACTTGGAGGTCAATGGTGGTCTTTGGA
ACCCGAAAAAGGCCCTGGAAGTACAATACCCTGTGCCGAGGTGTATGGAC
ACTCTATGTACCTGCCACAATGCCCTCCACACAGCTCCACACGAAACGAC
GCCCGGGAATCTGTCCTCGAGGGCAGATGGGAAAACGCCTGCCTTCAAGC
GGTACAGCATTGTTCTTGGAGGTAGACACGCAAAGAAATTCACCGCGGGA
TTCCAGCCGGCGGCCTAACCCTAACCCTAAACCCAAACCCCAAGCTAGGT
TGGTGTACATTGTTTAGATTCTAGGCCGCTGTAACCGGTCCAACAGCTTG
AGGGCAGGGCGTCCCCATCTACCCTCGAGGGCAGATTCCCGGGCGCCGCA
GCTCCACACCAGCGCTGGGGACACAACTGAGATGTCGCGGACATCTCCAA
AATGACGAAAAAACAAACGCCTCTGCGATTTCAAATTGGCTTTTCTCTTC
CAGGCATCATGACGGTTCTTCCGGTTGTCGATGTATACGCCCTTCGAACG
AGCAAGTTGAATTTTCCAGGAATTTTCCAGGAAATGTCACCCCCCCCCAC
GCCGTTGGCGTGTATGCGGGAACGCTGTTTGACACACGTCGGCTGAAAAA
GGTTTCTACCCTCTGACTTGCTGTGCCGCACTTTTTCGTGCCCGATTTCC
CCCTGATACCGAGATGGCATTCTTTGTAAAAATAATCGGGAAACGACGGT
TGTTGTTGTTGTTGTTGATTCTTACATTAGCTCTCTAGTCCAAAAAGACC
CCTTGGGGGGGCCGTGGTCACAAAACAAGGCACCCTCGACGCCGCGGAAG
AAAAGTGCATACATACCTATGTACAATGCAATATACTGTAGCCTAGTATA
TACCCACCATCCGTGCCTACGCTTGTTCCCCCCCACGCATCACAGCACCT
GCCCTCGCGTGTCCTTGCGTGTCCTTGGTCATGTATCCTCCGCCTGCGTC
GCTGCCTGCCTGCTCAAGTGTTGCACGAGATTTCCACGATCCTCGACACG
GGTTTGGACCGCAAGACGCTAAGCCTCCTGCTGGAGCTGACCGAGAGCGG
CGTGAACCCCGAGGCCCTGGCGGCTGTCGTGAAGGAGCTCCGGAGAGAGG
CGGCGACCCTCAGCGCGCAGCGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9713:1602..3727+

>mRNA_L-elsbetiae_contig9713.18685.1 ID=mRNA_L-elsbetiae_contig9713.18685.1|Name=mRNA_L-elsbetiae_contig9713.18685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig9713:1602..3727+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGTGCAAGAGATGTGCGAGATTCTATCGACGATGCCTGGTGCAA
GAGATGTGCGAGATTCTATCGACGTGTTGCACGAGATTTCCACGATCCTC
GACACGGGTTTGGACCGCAAGACGCTAAGCCTCCTGCTGGAGCTGACCGA
GAGCGGCGTGAACCCCGAGGCCCTGGCGGCTGTCGTGAAGGAGCTCCGGA
GAGAGGCGGCGACCCTCAGCGCGCAGCGATGATGTTGCACGAGATTTCCA
CGATCCTCGACACGGGTTTGGACCGCAAGACGCTAAGCCTCCTGCTGGAG
CTGACCGAGAGCGGCGTGAACCCCGAGGCCCTGGCGGCTGTCGTGAAGGA
GCTCCGGAGAGAGGCGGCGACCCTCAGCGCGCAGCGATGA
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