mRNA_L-elsbetiae_contig9708.18681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9708.18681.1
Unique NamemRNA_L-elsbetiae_contig9708.18681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9708.18681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9708contigL-elsbetiae_contig9708:3918..6684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size356
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9708.18681.1prot_L-elsbetiae_contig9708.18681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9708 3918..6630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.1677773-CDS-L-elsbetiae_contig9708:3917..39711622817035.1677773-CDS-L-elsbetiae_contig9708:3917..3971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 3918..3971 +
1691683998.3318427-CDS-L-elsbetiae_contig9708:3917..39711691683998.3318427-CDS-L-elsbetiae_contig9708:3917..3971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 3918..3971 +
1622817035.1806679-CDS-L-elsbetiae_contig9708:4890..49761622817035.1806679-CDS-L-elsbetiae_contig9708:4890..4976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 4891..4976 +
1691683998.3450408-CDS-L-elsbetiae_contig9708:4890..49761691683998.3450408-CDS-L-elsbetiae_contig9708:4890..4976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 4891..4976 +
1622817035.1918447-CDS-L-elsbetiae_contig9708:5713..57711622817035.1918447-CDS-L-elsbetiae_contig9708:5713..5771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 5714..5771 +
1691683998.3564527-CDS-L-elsbetiae_contig9708:5713..57711691683998.3564527-CDS-L-elsbetiae_contig9708:5713..5771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 5714..5771 +
1622817035.204608-CDS-L-elsbetiae_contig9708:6528..66301622817035.204608-CDS-L-elsbetiae_contig9708:6528..6630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 6529..6630 +
1691683998.3685515-CDS-L-elsbetiae_contig9708:6528..66301691683998.3685515-CDS-L-elsbetiae_contig9708:6528..6630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 6529..6630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.2177505-UTR-L-elsbetiae_contig9708:6630..66841622817035.2177505-UTR-L-elsbetiae_contig9708:6630..6684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9708 6631..6684 +
1691683998.38202-UTR-L-elsbetiae_contig9708:6630..66841691683998.38202-UTR-L-elsbetiae_contig9708:6630..6684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9708 6631..6684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9708.18681.1

>prot_L-elsbetiae_contig9708.18681.1 ID=prot_L-elsbetiae_contig9708.18681.1|Name=mRNA_L-elsbetiae_contig9708.18681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
QLQELELKAEEYKENLLKAEASSSNTVRDLNEADAAVDQLNQQIKDSDKE
LERKKREVAEVRQDIENAARSSEERIAQLEHDLRMARSQQSSGCQCTIS*
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mRNA from alignment at L-elsbetiae_contig9708:3918..6684+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9708.18681.1 ID=mRNA_L-elsbetiae_contig9708.18681.1|Name=mRNA_L-elsbetiae_contig9708.18681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2767bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:3918..6684+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGCAGGAGCTGGAGCTTAAGGCGGAGGAATACAAGGAAAACCTGCT
CAAGGTAATTGACGTGTGTGAGGCGCTCTCTTCATGTTACAACACACAAC
TTTTTTTTGTCAAGATTGCATAAACATATCACACCGCTTACATTATTTTT
ATGACATGAAACAGCTGGCGCAGCGCACGCAACTTTTAAAGAAAATAAAC
ACGGAACCCCCTCGTACCTTTCCGGCGAAATCGTCCGCTGCCGCGCTTGG
CATGTTTTGTGCTTGCGGCATGATCGGGACGTACACGGATCCCAGCCGAT
GTGCTACTTAGACTTACTTGATGGGGTTCCATGGTTTCGTTGTTTTTGGC
AAAGACGACAGACCTACAGTATTATTTTAACTGCTGAGGTCTGCGTCGGT
TCATATGCATTTAGCTCGGAACTTGTGTAGCTACGCGTACAGCCAGCACT
CGTAAATTAAAAAACGTACGTAGTACATCGCGTCCATCCAGGCCGTCCCG
AAGGCTGCGTGAAGCATTGCTGCAACACGCGGACTTCCCCCCCCACCTCT
TGTTTCGTTGTGTTCTGTGTCTTATGTCGATGTCGAGGTCGAGATCGATT
TAAACTGCTGTGTTGCGTTCGAACGCTGCTTCCCCTGCGCCTGCGCCTGC
CCTTGCCCCTCAGGGGATGCGCACAGAGTGTGTTTCGCGTTGTGGCTTGT
GGGGCACGTGGTGTGCTGTGCTGTTTCGTTTCGTTGGCGGTTTCGGTTCC
TGATGTTTTAAGAGTTAAGGCCCCTCCCACAACATATCCGTAGTTTTTTT
TGTTGGAGTTCGTCGATGATGTGATGTGGTCTGGACATGAAATATGTTGC
GAACCATGATCAGGTACATGGTTCATTGTCGTGTCTTGGTTGTGCCTGAC
ATCCCTTCGTGTTGTTACTTCGTTTGTAATTGCATTGTACTCCTGCATGC
TATAAACCACGACGTTTGAGCAGGCGGAGGCCTCGAGCAGTAATACCGTG
AGGGATCTGAACGAGGCGGACGCTGCGGTGGACCAGCTGAACCAGCAGAT
CAAGGACTCGTGAGTTGAACCGCCGTGGCACGCATGCTCTCTCCCGTTAG
ACTACTATTCCCCACCTCCTGGTGGGGGGGCGTTGGGCGTTACATAGCCG
CGTCGCGTCGCGTGTCCGTCTGCTGGGTTATCTGTTAAGACTTGTTTGTC
TTTCTCCTGCGGTGTGAGGACGCAGAGACGGGGAGCATCAATAGTAGTGA
GGATGGGGTCTGTTTGTGCGTGCGTGCGTGCGTGTGTTATCCTGGGCGGT
GAGTGCCGTGTGGTGCACTGGTGATCCAGGTGTTCACCATATAGACGCAT
CGTATTGTTGGCATGAAGTAGGCGTGCAAATGGACTGCTGCATGAGGATC
CGTTTACTACTGGTGTTTGCAAGTCCCACTTGTACCTCTTTACGTACACG
CACAGCTGATACATTCAATGTAAGAAACTTTATCCCCCTCCTCCAGCAAG
TTAATAAATAGTCCAAAAAGTGTTTTCTGTGCCCGCACAACCGTTCGATA
CTAAAAATTGCCTCGCGTAGAGCTACACGCATACGTGTTTACCCGCGCGG
GAGCGAGTGGTTCTGGAAACAGCTTCGCGTGGTGGTAATGCACCAGTCTT
GGTTCCTTGCGTGTGCAATAGCAGTATGCGGGCTTGAACTGAATGAGCCT
CAGGACAGCATTGCCAACACCTCCACCACCTCCACCACCAACGCAACAAT
CGTCCGTTTTTTCGTGGCCCTCTTGGCTGCGTCATCATTACACCAGAGAC
AAGGAATTGGAGAGGAAGAAGCGGGAGGTGGCAGAAGTCCGACAGGATAT
CGAGGTGTGTAAGCAAACCCTCTTGCGGGTATATACGGCGAGGTGACTCT
GTCTTGTGTTTCGCGCACGTGTCGGGGAGAAGCGAGCACTTGCTTTGTTC
GCGCTAATTATGTACTATTTGTGTTGTGCGTGCTTGTTTTGAAACTGCCG
TATTGCTTGCCAAAAGGTGGAGGTGTGCTCAGGTTATGTAGCTAGCGTCT
TCCAGTGGTTCTCGCTTTTGTTCTTGATTCCCCCTCCAGAGGTGTATTTT
CGTTTTGGTTTTTTTTTTTTCCCGATAAATAAATGTATACATACCCACCC
CGATGGTCTAGCTTCGGCGTTGACGCCAACCGTGACCATGACAGTAATGG
CAACAGCCGGCCACGGGAACTCTCTTGCTTTTTCACGTCGGTGTGTTTAG
GTTGTTGTTTTGCAATGGCCTGATCAAAGACAGCGGCGTCAATAACAAGC
ACCAGTATGCTTCTTACGTATCATATTACTTGGCGTTGGTTGGCGCTAGC
TGCTTGGATGTTTTGAAACGTCGATTTTTATGTGCTCTTCGCGTCGAAAA
CGGAAGCGATTTCCGATGCTGTACATTTTATGTAGACAAGAGCCAAAGTT
CAACATCATCTGTTTTCTGCGGCGGTGTGCTTTATTAACCCCTTTTCGTT
TATCCTGTGACCTTCAAAGATAACCAACCCACACAACTTGCGGGTTTGCC
GCCGCTTTTTGCTCCCGTTTCCCGTTCTCTCCAATGATGACCGGCCATGA
CGTGTTTTCAGAATGCGGCACGCAGCTCAGAAGAGCGTATCGCACAGCTC
GAGCACGACTTGCGGATGGCGCGCAGCCAACAATCCAGCGGGTGCCAGTG
CACCATATCTTGATGTATCGATTCATCGATTCACACTTATACTAAATCTA
GCAGGGCTTAGGCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9708:3918..6684+

>mRNA_L-elsbetiae_contig9708.18681.1 ID=mRNA_L-elsbetiae_contig9708.18681.1|Name=mRNA_L-elsbetiae_contig9708.18681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:3918..6684+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGCAGGAGCTGGAGCTTAAGGCGGAGGAATACAAGGAAAACCTGCT
CAAGCAGCTGCAGGAGCTGGAGCTTAAGGCGGAGGAATACAAGGAAAACC
TGCTCAAGGCGGAGGCCTCGAGCAGTAATACCGTGAGGGATCTGAACGAG
GCGGACGCTGCGGTGGACCAGCTGAACCAGCAGATCAAGGACTCGCGGAG
GCCTCGAGCAGTAATACCGTGAGGGATCTGAACGAGGCGGACGCTGCGGT
GGACCAGCTGAACCAGCAGATCAAGGACTCAGACAAGGAATTGGAGAGGA
AGAAGCGGGAGGTGGCAGAAGTCCGACAGGATATCGAGAGACAAGGAATT
GGAGAGGAAGAAGCGGGAGGTGGCAGAAGTCCGACAGGATATCGAGAATG
CGGCACGCAGCTCAGAAGAGCGTATCGCACAGCTCGAGCACGACTTGCGG
ATGGCGCGCAGCCAACAATCCAGCGGGTGCCAGTGCACCATATCTTGAAA
TGCGGCACGCAGCTCAGAAGAGCGTATCGCACAGCTCGAGCACGACTTGC
GGATGGCGCGCAGCCAACAATCCAGCGGGTGCCAGTGCACCATATCTTGA
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