mRNA_L-elsbetiae_contig9704.18678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9704.18678.1
Unique NamemRNA_L-elsbetiae_contig9704.18678.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9704.18678.1 vs. uniprot
Match: D8LF36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF36_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.360e-27
Identity = 147/189 (77.78%), Postives = 158/189 (83.60%), Query Frame = 2 
Query:  194 YNSAKPPKETCSLCEEALEVVKGKFSGSFVKLGDGIKVHVECRSAYHEKHTERXXXXXXXXXXXXXXXXXXXXELEGGEGRIXXXXXXXXXXXXXXXXXXXXXAVRRMEGFSGDFMVVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYPVDRKLGDTEGEAGEAKVHLECFEAYQAEPAK 760
            Y  +KP  E C  C E L  V+GKFSGS+V LGDGIKVHVECRSAYH+KHT  XXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXX AVRRMEGFSGDFM+++G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PVDRKLGD EGE  E+KVH+ECFEAYQA+ A+
Sbjct:   97 YKGSKPAAEKCGECGEPLSFVEGKFSGSYVTLGDGIKVHVECRSAYHQKHTXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXKAVRRMEGFSGDFMMIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDRKLGDAEGEDNESKVHMECFEAYQAQLAE 284
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9704.18678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF36_ECTSI3.360e-2777.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9704contigL-elsbetiae_contig9704:981..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog2880.D8LF36
Hectar predicted targeting categoryother localisation
EggNOG OGs2EZ5B@1,2T0IG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001510.1
Exons3
Model size1113
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9704.18678.1prot_L-elsbetiae_contig9704.18678.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9704 1820..2741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.93745-UTR-L-elsbetiae_contig9704:980..12911622817034.93745-UTR-L-elsbetiae_contig9704:980..1291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 981..1291 +
1691683998.20097-UTR-L-elsbetiae_contig9704:980..12911691683998.20097-UTR-L-elsbetiae_contig9704:980..1291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 981..1291 +
1622817034.9513566-UTR-L-elsbetiae_contig9704:1616..18191622817034.9513566-UTR-L-elsbetiae_contig9704:1616..1819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 1617..1819 +
1691683998.212815-UTR-L-elsbetiae_contig9704:1616..18191691683998.212815-UTR-L-elsbetiae_contig9704:1616..1819Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 1617..1819 +
1622817034.991865-UTR-L-elsbetiae_contig9704:2741..29291622817034.991865-UTR-L-elsbetiae_contig9704:2741..2929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 2742..2929 +
1691683998.2388089-UTR-L-elsbetiae_contig9704:2741..29291691683998.2388089-UTR-L-elsbetiae_contig9704:2741..2929Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9704 2742..2929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.9646332-CDS-L-elsbetiae_contig9704:1819..18731622817034.9646332-CDS-L-elsbetiae_contig9704:1819..1873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9704 1820..1873 +
1691683998.2214322-CDS-L-elsbetiae_contig9704:1819..18731691683998.2214322-CDS-L-elsbetiae_contig9704:1819..1873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9704 1820..1873 +
1622817034.9778647-CDS-L-elsbetiae_contig9704:2384..27411622817034.9778647-CDS-L-elsbetiae_contig9704:2384..2741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9704 2385..2741 +
1691683998.2301257-CDS-L-elsbetiae_contig9704:2384..27411691683998.2301257-CDS-L-elsbetiae_contig9704:2384..2741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9704 2385..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9704.18678.1

>prot_L-elsbetiae_contig9704.18678.1 ID=prot_L-elsbetiae_contig9704.18678.1|Name=mRNA_L-elsbetiae_contig9704.18678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MEGFSGDFMVVEGGKVHKECASEYQEMVADKCSHCNKGIRRAGGFSGSYY
PVDRKLGDTEGEAGEAKVHLECFEAYQAEPAKEEEEEGGAAAPDSAAETA
ADTAAVATPVADAEIDTRADNVAEAGTAAGAAKGSS*
back to top

mRNA from alignment at L-elsbetiae_contig9704:981..2929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9704.18678.1 ID=mRNA_L-elsbetiae_contig9704.18678.1|Name=mRNA_L-elsbetiae_contig9704.18678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1949bp|location=Sequence derived from alignment at L-elsbetiae_contig9704:981..2929+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGCCCATTAGGAGAGTTTCGGATTGGCGAAGTACATAGGCATACAT
ACCAAGGAGGGATCCGCAAAGTGTCTCCAGATTCCTGACGTCAAAACTTA
GCAGCGCTATTCACGCCTGGTCAGTCAGGTACGCGCCGAGCTCACAACCC
CCGCCGGCTGTCGTTTTTTGCCCTCAGTGAGTGCTGGGAGGCCTACAACA
GCGCCAAGCCGCCAAAGGAGACATGTAGCCTGTGTGAGGAGGCGCTCGAG
GTCGTGAAAGGAAAGTTCAGTGGCAGCTTCGTGAAGCTGGGAGACGGAAT
CAAAGTGCACGGTGGGTTCATGGAACGCGACCCGGATTTCCTCGAGCGTT
TTGGGGCACGTGTTGGGCGAAAGACCTTTTATGTCTTTCCTTGACAAGGT
ACTTTCGCCAAAACGGTTCGACGCCGTTGCGAACTGACTGTTGGGACGTG
TGTCAAGACTCGGCGAGCGCGGCAAATTTTCAGATAAGACGAATGTAAAA
TGTTTATGTTTCCCTATCGCCTGTAACTGCTCATCAATTGTAAGGTACAA
CCTTTCAAGCCACCCTTTTGTCCCACCAACATGCATGCATGCATACGTAT
TGCACATCTTCATGTTTTTTTTCCATTTTTTGCCAGTGGAGTGCCGTTCG
GCCTACCACGAGAAGCACACGGAACGATGCCTGCAATGTAAAGAGCCAGT
AGCCCCCGAGAAGGGCAAGTTCAGCGGAGAGTTCTTCGAGTTGGAGGGGG
GGGAGGGGCGGATCCACTCCGAGTGCTACGACGCGTACGAGGAAGCCACT
GCGGACAGGTGCCTCGTCTGCAAGAAGGCGGTGCGACGGATGGAAGGGTT
CAGCGGAGACTTCATGGTGGTCGAGGGTGGCAAAGTGCACAAGGTGTGTG
TGTGTGTGGTGGCGGTGGTGGTTGGGGGAGGGGTCGGAAAGGAGCATCGG
CCCCTTCTGCTTGCGGGGAGCAGTCTTTTCTTCACAGCAGTTATTGTGTG
TATAACGTGATCCAAAATTCCTTGTTCGCGCTGCGTCAATGCGAGCATCT
CGGCAGCGACTGCTGTGGGTACCCATTCCCTCATCTGTCGCTTTTTGGTT
ATGTAGCACTTTGGCTGGTAACCTTTAGTCTGTGTTACTATGTAGGGTTC
CACCCCCACCCGCAGTTAGGACGCTGGAGCCCTTCTTGTCGTTCGGGAGA
GGTCGGGGCCGCCAAAACAACTCATGATTCGCCGATACATGGAACGTGAA
AGAATGTGTACTTCGTCCGTCTTTGCCTGCGGACTTAAAAGTCTTGCGGA
GCAATTTTCGGGCTACATGTTTGTATTTACGTACATACAAATGTGCCTCC
GAAAGAAGCTTGCCATCACCAGCCGCCTCGTTTTTTTTCTCGCGGCGTCC
GCAGGAGTGTGCGTCCGAATACCAGGAGATGGTCGCCGACAAGTGCTCCC
ACTGCAACAAGGGGATCCGCAGGGCGGGGGGCTTCAGCGGGTCGTACTAC
CCCGTCGATCGTAAGCTAGGAGACACCGAGGGCGAAGCGGGCGAAGCGAA
AGTGCACCTGGAGTGCTTTGAGGCCTACCAGGCGGAGCCAGCAAAGGAGG
AAGAGGAGGAGGGCGGAGCCGCAGCACCTGATTCTGCGGCTGAGACAGCA
GCCGACACAGCAGCAGTGGCGACCCCAGTAGCGGATGCAGAGATCGACAC
AAGAGCTGATAACGTGGCAGAGGCTGGCACGGCGGCTGGCGCAGCGAAGG
GGAGCAGCTGACACCCCGGTATCCTATAGATCTGTTGGCGTGGGCAAACC
TGTTCAGAGTAGTGGACAGGGATGAGTTGTGGAGATTCGAATGACTTAAT
AAGCTAAGCCAAGCCAAGCCAATTGGTTATCCACTCCCCCATCTCCAAGT
TGTAAAATACAGAAATATAATAGAGCGTTGCTGTACAAAGCTTGAGTTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9704:981..2929+

>mRNA_L-elsbetiae_contig9704.18678.1 ID=mRNA_L-elsbetiae_contig9704.18678.1|Name=mRNA_L-elsbetiae_contig9704.18678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig9704:981..2929+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGGTTCAGCGGAGACTTCATGGTGGTCGAGGGTGGCAAAGTGCA
CAAGATGGAAGGGTTCAGCGGAGACTTCATGGTGGTCGAGGGTGGCAAAG
TGCACAAGGAGTGTGCGTCCGAATACCAGGAGATGGTCGCCGACAAGTGC
TCCCACTGCAACAAGGGGATCCGCAGGGCGGGGGGCTTCAGCGGGTCGTA
CTACCCCGTCGATCGTAAGCTAGGAGACACCGAGGGCGAAGCGGGCGAAG
CGAAAGTGCACCTGGAGTGCTTTGAGGCCTACCAGGCGGAGCCAGCAAAG
GAGGAAGAGGAGGAGGGCGGAGCCGCAGCACCTGATTCTGCGGCTGAGAC
AGCAGCCGACACAGCAGCAGTGGCGACCCCAGTAGCGGATGCAGAGATCG
ACACAAGAGCTGATAACGTGGCAGAGGCTGGCACGGCGGCTGGCGCAGCG
AAGGGGAGCAGCTGAGAGTGTGCGTCCGAATACCAGGAGATGGTCGCCGA
CAAGTGCTCCCACTGCAACAAGGGGATCCGCAGGGCGGGGGGCTTCAGCG
GGTCGTACTACCCCGTCGATCGTAAGCTAGGAGACACCGAGGGCGAAGCG
GGCGAAGCGAAAGTGCACCTGGAGTGCTTTGAGGCCTACCAGGCGGAGCC
AGCAAAGGAGGAAGAGGAGGAGGGCGGAGCCGCAGCACCTGATTCTGCGG
CTGAGACAGCAGCCGACACAGCAGCAGTGGCGACCCCAGTAGCGGATGCA
GAGATCGACACAAGAGCTGATAACGTGGCAGAGGCTGGCACGGCGGCTGG
CGCAGCGAAGGGGAGCAGCTGA
back to top