mRNA_L-elsbetiae_contig9697.18668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9697.18668.1
Unique NamemRNA_L-elsbetiae_contig9697.18668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9697.18668.1 vs. uniprot
Match: A0A6H5JM97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM97_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.530e-11
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 PLSPMPKLFSRPFKNSAQETAAXXXXXXXXXXXXXXXXXIPEAFALARARAKELRPLESARAAAELGGLLRQAS 222
            PLSPMP++    F+ S QE ++ XXXXXXXXXXXXX   IPEAFALAR RAKELRPL S RAAAELGGLLRQAS
Sbjct:  740 PLSPMPRILPNAFRTSPQEASSAXXXXXXXXXXXXXG--IPEAFALARERAKELRPLGSPRAAAELGGLLRQAS 811
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9697.18668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JM97_9PHAE3.530e-1174.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9697contigL-elsbetiae_contig9697:6168..7575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA-binding protein, ACBP
Ec32 orthologEc-13_003520.1
Exons3
Model size282
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9697.18668.1prot_L-elsbetiae_contig9697.18668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9697 6180..7575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.8424203-UTR-L-elsbetiae_contig9697:6167..61791622817033.8424203-UTR-L-elsbetiae_contig9697:6167..6179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9697 6168..6179 +
1691683997.3870578-UTR-L-elsbetiae_contig9697:6167..61791691683997.3870578-UTR-L-elsbetiae_contig9697:6167..6179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9697 6168..6179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.8590677-CDS-L-elsbetiae_contig9697:6179..62471622817033.8590677-CDS-L-elsbetiae_contig9697:6179..6247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 6180..6247 +
1691683997.3989794-CDS-L-elsbetiae_contig9697:6179..62471691683997.3989794-CDS-L-elsbetiae_contig9697:6179..6247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 6180..6247 +
1622817033.8716424-CDS-L-elsbetiae_contig9697:6358..65211622817033.8716424-CDS-L-elsbetiae_contig9697:6358..6521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 6359..6521 +
1691683997.4160595-CDS-L-elsbetiae_contig9697:6358..65211691683997.4160595-CDS-L-elsbetiae_contig9697:6358..6521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 6359..6521 +
1622817033.8845227-CDS-L-elsbetiae_contig9697:7536..75751622817033.8845227-CDS-L-elsbetiae_contig9697:7536..7575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 7537..7575 +
1691683997.4277382-CDS-L-elsbetiae_contig9697:7536..75751691683997.4277382-CDS-L-elsbetiae_contig9697:7536..7575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9697 7537..7575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9697.18668.1

>prot_L-elsbetiae_contig9697.18668.1 ID=prot_L-elsbetiae_contig9697.18668.1|Name=mRNA_L-elsbetiae_contig9697.18668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MPKLFSRPFKNSAQETAAAAAGLGGGGGGGGGGGGIPEAFALARARAKEL
RPLESARAAAELGGLLRQASCLTNSIASILGDWHTCAMPL
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mRNA from alignment at L-elsbetiae_contig9697:6168..7575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9697.18668.1 ID=mRNA_L-elsbetiae_contig9697.18668.1|Name=mRNA_L-elsbetiae_contig9697.18668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1408bp|location=Sequence derived from alignment at L-elsbetiae_contig9697:6168..7575+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGTCTCCCATGCCGAAGCTGTTTTCCAGGCCGTTCAAAAACTCGGC
CCAGGAAACAGCAGCAGCAGCAGCAGGACTGTCAGCGGGACTGTCAGCAG
CAGCAGCAACAGCAGCAGCAGCAACAACAGCAACAACAACAACAGCAGCA
GCAGCAACAGCAGCAGCAACAGCATCATCATCAGGTGGTAGGGGTGGGGG
GGGGGGGGGGGGGGGGGGAGGGGGAGGCATCCCGGAGGCGTTCGCTCTGG
CGAGAGCGCGGGCGAAAGAGCTGCGGCCGCTGGAGTCCGCGAGGGCGGCG
GCGGAGCTTGGGGGCCTCCTCCGCCAGGCGAGTTGTTTGACTAACAGTAT
CGCCGTAGTCTGACAGTCTCGCCGTAGTCTGACGGTCGGTCTCGCCTTAG
TTTTGACAGTCTCGCCGAAGTTTGACAGTCTAGCCGTTGTTTGACAGTCT
CGCTGTAGTCTGACAGTCTCGCCGTAGTTTGACAGTCTCGCCGTAGTCCC
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGAATTAGCGCTGTGGTTTG
CTGCTTGTTAGATTACCGTATATTACATAAGATAAGACACCCCCTGGACC
GATTTTCAAAGCTCAAGTACTCGACAGCAAGCGGAGCGCCAGTCCCGAAA
AGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTTTCCGAAAATGTGGCGTT
TGTGGTTTGAATCGTACTCGTTGCGGAGTAACCAAGCTTTCAATATCGGT
CCAGGGGGTGTCTTATCTTATGTCACCTACGGTATCGTGTTTGTATCATT
TCCTACGTTGCTGTTTGCTGTTGCTGGTGCTGTTGCTGGTGATTCTGCTA
TATAAAGTGCTACCTGCTGCTGTTGGGGTGTGTCTCTGAACCTGATGGAT
AACGTCGCACATGTACCGGCGTCGCCAACCGTCTTATTCCACGCCCCCGG
TACCGACATTCATCTTATACCGTAATCATGCGGGTTATCGCACCCCCATG
TTGGCATTTTCCTATAGCGTTTTTCTCCACAACCAGGAGGGTACCACTGC
CGAAAAGGGTGGTTTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGCA
TCAGTTAGTGTTCGCGCCCTCCTGGTTGTGGAGAAATACGCTAAATATAG
AAAAACGCCAACACGGGGGTGCGATAACCCGCATGATTACGGTAGATAAC
GTCGCACATGTACCGACGTCGTTAACCATCTTACTCCGCGCCCCCGGTAC
CGATATAACCTGATAGAGATAAACGTCGCATATGGACCGACGTCGTTAAC
CGTCTCATTCCCCAACCCCCGCCTGCTGTTTCAATTTTTTTTGTTGCGGC
CGGTATCACGGTACTACAGTCGATATTGGGGGACTGGCACACTTGTGCGA
TGCCTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9697:6168..7575+

>mRNA_L-elsbetiae_contig9697.18668.1 ID=mRNA_L-elsbetiae_contig9697.18668.1|Name=mRNA_L-elsbetiae_contig9697.18668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig9697:6168..7575+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAAGCTGTTTTCCAGGCCGTTCAAAAACTCGGCCCAGGAAACAGC
AGCAGCAGCAGCAGGACTATGCCGAAGCTGTTTTCCAGGCCGTTCAAAAA
CTCGGCCCAGGAAACAGCAGCAGCAGCAGCAGGACTGGGTGGGGGGGGGG
GGGGGGGGGGGGGAGGGGGAGGCATCCCGGAGGCGTTCGCTCTGGCGAGA
GCGCGGGCGAAAGAGCTGCGGCCGCTGGAGTCCGCGAGGGCGGCGGCGGA
GCTTGGGGGCCTCCTCCGCCAGGCGAGTTGTTTGACTAACAGTATCGCCG
GGTGGGGGGGGGGGGGGGGGGGGGGGAGGGGGAGGCATCCCGGAGGCGTT
CGCTCTGGCGAGAGCGCGGGCGAAAGAGCTGCGGCCGCTGGAGTCCGCGA
GGGCGGCGGCGGAGCTTGGGGGCCTCCTCCGCCAGGCGAGTTGTTTGACT
AACAGTATCGCCTCGATATTGGGGGACTGGCACACTTGTGCGATGCCTCT
ATCGATATTGGGGGACTGGCACACTTGTGCGATGCCTCTA
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