mRNA_L-elsbetiae_contig9693.18665.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9693.18665.1
Unique NamemRNA_L-elsbetiae_contig9693.18665.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9693.18665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9693contigL-elsbetiae_contig9693:1361..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9693.18665.1prot_L-elsbetiae_contig9693.18665.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9693 1649..2038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.6096854-UTR-L-elsbetiae_contig9693:1360..16481622817033.6096854-UTR-L-elsbetiae_contig9693:1360..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9693 1361..1648 +
1691683997.2384653-UTR-L-elsbetiae_contig9693:1360..16481691683997.2384653-UTR-L-elsbetiae_contig9693:1360..1648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9693 1361..1648 +
1622817033.6339388-UTR-L-elsbetiae_contig9693:2038..20961622817033.6339388-UTR-L-elsbetiae_contig9693:2038..2096Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9693 2039..2096 +
1691683997.2746928-UTR-L-elsbetiae_contig9693:2038..20961691683997.2746928-UTR-L-elsbetiae_contig9693:2038..2096Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9693 2039..2096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817033.6220875-CDS-L-elsbetiae_contig9693:1648..20381622817033.6220875-CDS-L-elsbetiae_contig9693:1648..2038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9693 1649..2038 +
1691683997.2636151-CDS-L-elsbetiae_contig9693:1648..20381691683997.2636151-CDS-L-elsbetiae_contig9693:1648..2038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9693 1649..2038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9693.18665.1

>prot_L-elsbetiae_contig9693.18665.1 ID=prot_L-elsbetiae_contig9693.18665.1|Name=mRNA_L-elsbetiae_contig9693.18665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MVLKQPARSKLRLDLHRCPKSPHSKMTATHGKPHYDAMIITPSKTAGVYI
FDWNFVLMGKIYKKYPTLISAWMEIARIFSETATPKKQSPENERRNQRKG
EIAAGAAREGKWVYNSPREDLLYRLGVHG*
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mRNA from alignment at L-elsbetiae_contig9693:1361..2096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9693.18665.1 ID=mRNA_L-elsbetiae_contig9693.18665.1|Name=mRNA_L-elsbetiae_contig9693.18665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=736bp|location=Sequence derived from alignment at L-elsbetiae_contig9693:1361..2096+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCGAAAATGTGGCGTTTGTGGTTAAATCGTATCCGTTGCGGAGTAACC
AAGCTTTCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGT
ACAGAGTATACCAGTAGCGCGGTCGTTTCTGCTACAATCTGTTCCTGGTG
AGCTGGTTCTGAATGCGAAACAACGCGACGTTTCGCTTCCTTCTCTTTGA
AGTTTGCACTATCACCGCCACAAGCTCCACAAGGTGAACGCACGAAACGT
GTTGGCCTTGTGGGCTCCTAAGCAACAACCCTGCGAAGATGGTTCTAAAA
CAACCAGCAAGAAGCAAGCTACGTTTGGACTTGCACCGTTGCCCAAAATC
CCCCCATTCAAAAATGACGGCAACACACGGGAAGCCACACTACGATGCTA
TGATAATAACTCCCTCGAAAACAGCGGGGGTCTACATTTTCGATTGGAAT
TTTGTGCTCATGGGGAAAATTTACAAAAAATACCCGACTTTAATTTCAGC
GTGGATGGAAATTGCTCGAATCTTCTCAGAGACAGCAACACCGAAAAAAC
AAAGCCCAGAGAACGAGCGAAGAAATCAACGCAAAGGCGAAATTGCTGCA
GGGGCGGCGAGGGAGGGTAAGTGGGTCTACAACAGCCCACGGGAAGACCT
TTTGTACAGGCTGGGCGTACACGGCTGACGTCAAGTAACGACATAAAATA
AAAACGTACGTATCGCTTCTTTTGCATCACCGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9693:1361..2096+

>mRNA_L-elsbetiae_contig9693.18665.1 ID=mRNA_L-elsbetiae_contig9693.18665.1|Name=mRNA_L-elsbetiae_contig9693.18665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig9693:1361..2096+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCTAAAACAACCAGCAAGAAGCAAGCTACGTTTGGACTTGCACCG
TTGCCCAAAATCCCCCCATTCAAAAATGACGGCAACACACGGGAAGCCAC
ACTACGATGCTATGATAATAACTCCCTCGAAAACAGCGGGGGTCTACATT
TTCGATTGGAATTTTGTGCTCATGGGGAAAATTTACAAAAAATACCCGAC
TTTAATTTCAGCGTGGATGGAAATTGCTCGAATCTTCTCAGAGACAGCAA
CACCGAAAAAACAAAGCCCAGAGAACGAGCGAAGAAATCAACGCAAAGGC
GAAATTGCTGCAGGGGCGGCGAGGGAGGGTAAGTGGGTCTACAACAGCCC
ACGGGAAGACCTTTTGTACAGGCTGGGCGTACACGGCTGAATGGTTCTAA
AACAACCAGCAAGAAGCAAGCTACGTTTGGACTTGCACCGTTGCCCAAAA
TCCCCCCATTCAAAAATGACGGCAACACACGGGAAGCCACACTACGATGC
TATGATAATAACTCCCTCGAAAACAGCGGGGGTCTACATTTTCGATTGGA
ATTTTGTGCTCATGGGGAAAATTTACAAAAAATACCCGACTTTAATTTCA
GCGTGGATGGAAATTGCTCGAATCTTCTCAGAGACAGCAACACCGAAAAA
ACAAAGCCCAGAGAACGAGCGAAGAAATCAACGCAAAGGCGAAATTGCTG
CAGGGGCGGCGAGGGAGGGTAAGTGGGTCTACAACAGCCCACGGGAAGAC
CTTTTGTACAGGCTGGGCGTACACGGCTGA
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