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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 804 |
| Cds size | 519 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817033.4936676-UTR-L-elsbetiae_contig9693:298..387 | 1622817033.4936676-UTR-L-elsbetiae_contig9693:298..387 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 299..387 - |
| 1691683997.158449-UTR-L-elsbetiae_contig9693:298..387 | 1691683997.158449-UTR-L-elsbetiae_contig9693:298..387 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 299..387 - |
| 1622817033.5096433-UTR-L-elsbetiae_contig9693:951..1009 | 1622817033.5096433-UTR-L-elsbetiae_contig9693:951..1009 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 952..1009 - |
| 1691683997.1715763-UTR-L-elsbetiae_contig9693:951..1009 | 1691683997.1715763-UTR-L-elsbetiae_contig9693:951..1009 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 952..1009 - |
| 1622817033.5229986-UTR-L-elsbetiae_contig9693:2069..2135 | 1622817033.5229986-UTR-L-elsbetiae_contig9693:2069..2135 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 2070..2135 - |
| 1691683997.1824222-UTR-L-elsbetiae_contig9693:2069..2135 | 1691683997.1824222-UTR-L-elsbetiae_contig9693:2069..2135 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 2070..2135 - |
| 1622817033.5763595-UTR-L-elsbetiae_contig9693:4774..4846 | 1622817033.5763595-UTR-L-elsbetiae_contig9693:4774..4846 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 4775..4846 - |
| 1691683997.2276237-UTR-L-elsbetiae_contig9693:4774..4846 | 1691683997.2276237-UTR-L-elsbetiae_contig9693:4774..4846 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9693 4775..4846 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817033.5356784-CDS-L-elsbetiae_contig9693:2135..2188 | 1622817033.5356784-CDS-L-elsbetiae_contig9693:2135..2188 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 2136..2188 - |
| 1691683997.1936948-CDS-L-elsbetiae_contig9693:2135..2188 | 1691683997.1936948-CDS-L-elsbetiae_contig9693:2135..2188 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 2136..2188 - |
| 1622817033.5515954-CDS-L-elsbetiae_contig9693:3844..3933 | 1622817033.5515954-CDS-L-elsbetiae_contig9693:3844..3933 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 3845..3933 - |
| 1691683997.2049615-CDS-L-elsbetiae_contig9693:3844..3933 | 1691683997.2049615-CDS-L-elsbetiae_contig9693:3844..3933 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 3845..3933 - |
| 1622817033.564163-CDS-L-elsbetiae_contig9693:4397..4774 | 1622817033.564163-CDS-L-elsbetiae_contig9693:4397..4774 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 4398..4774 - |
| 1691683997.2175906-CDS-L-elsbetiae_contig9693:4397..4774 | 1691683997.2175906-CDS-L-elsbetiae_contig9693:4397..4774 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9693 4398..4774 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9693.18664.1 >prot_L-elsbetiae_contig9693.18664.1 ID=prot_L-elsbetiae_contig9693.18664.1|Name=mRNA_L-elsbetiae_contig9693.18664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MSSAWVEQWAPLTASGSCRVRRSETSGRNSREYNEGYSDLRSGCPVNKQQ
SWGRRAFVARALAVVVVVGIDRRDVGRALVLEAKPLSSLAKEWYPVAGRG
TCWSCGSAFVFRHQTWTACSMGGETRRAVRSEPSWCCCARVTTTALVGSQ
LVAGAGGHLHRKRDSLRERTPR* back to topmRNA from alignment at L-elsbetiae_contig9693:299..4846- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig9693.18664.1 ID=mRNA_L-elsbetiae_contig9693.18664.1|Name=mRNA_L-elsbetiae_contig9693.18664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4548bp|location=Sequence derived from alignment at L-elsbetiae_contig9693:299..4846- (Laminarionema elsbetiae ELsaHSoW15)
TAGCAGAACTGGACGAGCGTGACAGCCGCTTGAGATCTGTACAGGACGCC
AGTGACAGACGCGACGACGCCCATGTCATCCGCATGGGTCGAACAATGGG
CACCCTTGACCGCCTCAGGCAGTTGCAGGGTCAGGAGATCAGAAACCTCA
GGGCGCAACTCGAGGGAATACAACGAAGGGTACAGCGACCTGCGATCAGG
GTGCCCAGTCAATAAACAGCAGTCTTGGGGCAGGCGGGCTTTCGTCGCCC
GTGCTCTGGCTGTCGTTGTTGTTGTTGGAATCGATCGGCGAGACGTCGGG
CGCGCGCTGGTTTTGGAGGCTAAGCCGCTCTCCTCGCTTGCGAAGGAGTG
GTATCCTGTTGCCGGGCGAGGCACCTGCTGGAGCTGCGGCTCTGCCTTTG
TCTTCCGGCACCAAACGTGGACAGCATGTTCCATGGGCGGGGAGACCAGG
TGCCGGTTGCCAGCACGTGTCAACCTTTTTCGCGCATGCCCAACTAGTCC
GTCTCCGTGGAACGCACCTGTGATGAAAAAAATGCTGAGTGATGAATTCC
CCAACAGTCACACACCGTTTCGGACTCCAACCTCAAAACCCCGCGGTTTG
TTGTCGGAGGAGCCAAGTTGCGTATTGTAAAGAACCTCCTCCCACTAAGC
TGCTATGTATGAACAGCCTTCTTTTGAGTGGGGAGCGTTTTTTCTCGAAA
CGTCTACAATATACCGCCTCCTCACGAGAGCTCCCGCAAAAAACCTCGAT
CATGGCCGCAACCCCTCTAAAACCCAAACCGAAGCCCCCCGATTCCCAAG
CTTGCTCCCTTGCCTCCATACCCCAGAACCAAGTCGACCGACCTTTCTGC
CCCGCCGCCGCTTTTCTCTTCGGCTGTCCTTTTCCTTTTTCTGTTTCGCT
GGCTTTGCTACAGGCGCGCCGTGCGCTCCGAGCCCAGTTGGTGTTGCTGT
GCGAGGGTGACCACCACTGCTTTGGTTGGGTCTCAGTTGGTGGCTGGGGC
AGGTGAGCGCAGCCCCGTCCTCGTTCCTATGCGTCTGCGTGCGTTCCTAT
TGCGCCTGCGTCTTCCCCTGTTGGTCAGCCTTGCGCTTGCTGTTGTTGGT
GTGCCTTGCGTCTGCTGCCATCTCGGCATTGTGGGGTTGTATCTGTCACG
AGCGGCGAGAACGTGGCGAACTTCAAAAAAAGCAGCTCTCAGACCCATGT
TTATGGTCAGAAAACGTTCAAAAAATATCTGGATATGTTGTCAAACATTT
TGGGATAACATTTGCCGAGAAGGAAGATTTTCGAGGCGCTTTTTATGGGA
AACAACATAATATCTTGGTCTTTCGTGCAAATGCACCCCGATTGCGGCGG
GACCTCTGATCTACTGCTGTCAAACGAGTCGTGGCAGACAAATCACAAAT
GCGCCATGAATACTGAACGTAACGAGATCATACAGGTCTCCCGGCAACCG
GGCCATATTTGTGCCGATAGCTCGGCCGCCGATCTGTGGCAGAAGCTCAC
CAGACGCGCGAGAAAAATTGTTTCGTGTGTCAAAAAAATACAGAAGCGTG
CGTCAGCGCTTCCCAACGGCGAAATAACCCTGGTTCGAGGAGACGTGCTC
ACGAAACCGACCAGCTTTCATCCGCTAGACCACGCATAATATTCACGTTT
AGTCTTGGCTGTGAACTTCATTCACTGCTTTCGTTAGGTTGGGCGTGGGT
TGGCAGTGGCCTTACTCAATCGAGAGGGAGGCGCATCGCTCTGCGAACGA
AGATGCAAAAAAAAAAGTGCGGTCAATTTTATCGAACTTTGACTGCTTGT
TTCCCGGCCTGAAAAAAGAGTTCCCAGCACACCGAGTGCACGGCGATACG
CCTCCCTCCCGATTGAATAAGACCACTGCCAACCCACGCCCACCCGAACG
AAAGCAATGAATGGAGGTGGCGGCCAAGAAGACTAACCGTGAAAAGGTAG
TCTAGCGGATGAGAGCTGGTTATGTTTGTAGTCGCGTCTCCTGTGGAACA
GGGGTTTTCTCGCCGTTCGGAGACACAAGCGCATGTTTTCTTGAGCGTTC
CAAACGACCTGTCTGTTTTATTTTTTACGGCACGCCTGACGAACCCCCGC
ATGTATCACACGCCAAAGTGTTGACACCGTGGCTCTAGGGTTCTTTCGAG
CCCTCTATTCGGTTGGTGCGTTCAGTGTTCATCGCGCAGTGGTTGGTTTT
GACGATTTTCTGCGCCTTCAGGTTCCGCCGCCTAAACATTTTCGCGAGGT
GCTCCATTTGAAAATGTTTGAAAATGTTTGGCAAACATTTTCGCAAAGGA
GCAACTTTTGCCCCATTTGAAAAAGTCTGGCAACATTTTGGGAAGGATTT
TTTCCCATAAAAAGCGCTTGAAAATGTTCGTTCGCAAAATGTTTGAAATT
TAAAGATTTTCGGGAACATTTTCTGACCACAAGCATGGGTCTGCCCACAT
CGTGAAGCGGCAGCTCTCCCGCTCGAAATTCCTCTACTCGACTGAAGCTT
CCCGAACATCAATACACCCCCCGCTAGCGGTCCACGCGTCCAACCAGTAG
CATGGCAGCGCTGCAGGACCCCCCTCACAAAACGTCTGTGCTTTGCTGAC
ACAACGTCCACCGTTTTGCTTTTCGACCCCCACCGTACATGACTCCTTGC
TGTTGTAGGAGGCCATCTCCACCGCAAGCGCGACAGCTTGCGGGAGCGCA
CGCCACGATGAGGAATCTGTCGGCGGCGGCGCTGGCATTGGGGGGTCATG
GCAGCGGTGATGCAAAAGAAGCGATACGTACGTTTTTATTTTATGTCGTT
ACTTGACGTCAGCCGTGTACGCCCAGCCTGTACAAAAGGTCTTCCCGTGG
GCTGTTGTAGACCCACTTACCCTCCCTCGCCGCCCCTGCAGCAATTTCGC
CTTTGCGTTGATTTCTTCGCTCGTTCTCTGGGCTTTGTTTTTTCGGTGTT
GCTGTCTCTGAGAAGATTCGAGCAATTTCCATCCACGCTGAAATTAAAGT
CGGGTATTTTTTGTAAATTTTCCCCATGAGCACAAAATTCCAATCGAAAA
TGTAGACCCCCGCTGTTTTCGAGGGAGTTATTATCATAGCATCGTAGTGT
GGCTTCCCGTGTGTTGCCGTCATTTTTGAATGGGGGGATTTTGGGCAACG
GTGCAAGTCCAAACGTAGCTTGCTTCTTGCTGGTTGTTTTAGAACCATCT
TCGCAGGGTTGTTGCTTAGGAGCCCACAAGGCCAACACGTTTCGTGCGTT
CACCTTGTGGAGCTTGTGGCGGTGATAGTGCAAACTTCAAAGAGAAGGAA
GCGAAACGTCGCGTTGTTTCGCATTCAGAACCAGCTCACCAGGAACAGAT
TGTAGCAGAAACGACCGCGCTACTGGTATACTCTGTACCGTAGGTGACAT
AAGATAAGACACCCCCTGGACCGATATTGAAAGCTTGGTTACTCCGCAAC
GGATACGATTTAACCACAAACGCCACATTTTCGGACAGCTCTCAACGAGA
TCTTTCCAAGGCCGCCCTTTTCGGGACTGACCGTCTGCTTGCTGTGGAGT
ACTTGAGCTTTGGAAATCGGTCCAGGGGGTGTCTTATCTTATGCCACCTA
CGGTAATACTCGAGTACTAGCGCCCCTCCCCCGCGTCAAGGCCCATACCG
ACTGCGTGATGCTTTGAGAGCCAGGTACGGCGAAAAAAAGCAAATCGATG
TAGCAACCTGACGGATTCGTTGGGATGGTGTGCTATTCTAGCTCTGCATG
GTCGACGATAACAGCTTCCCACCGTCGCTTCTCCCGCGCGTGTTCGTTGG
TTTAACGTGTCACTTGCCGCTGGGTCTACTGCAGGAGGCGCCAGCGAGCT
CCGACGGGCTTGGTCTACGGAAGGGGTTGTGCTGGGCTTCCACCGGTAAG
TGTTGCTGCTGTGGCTGCTGCTGCTGCCGCTTGCTTCTGCTGCAGAACTG
CTGCTGCTGCTGCTCTGCTGCTGCTGCTCTGCTGCTGCTGCTGTTGCTGA
TGCTGATGACGCGTTTGTGATTCACCTGTTTCTGCTCGATTGGAATACTC
CCAGCCAGAGAGAAGCGTGCCGCTTTGGGGGATTGGTAAGAGCAGCGTGT
TACGTAGCTCTCTCTGTGACAGAACAAAACAAAACAAAACAATACTCCTA
ATTTCGTAGAGACACGCTGGTTGTTGGTGCCTTTCCTTTTAGCAGGAGTT
ATCGCAGGCTCATCGACCACTGGGTGTTGCCGTAGCTCGCGCGTCCTTCG
CTCTTCGAGGACACAAGATATAACGGCACCCAGCTGAAGTTTACTTTTGA
TCATTGGTGTCGTACCCGTCGACGACATTTTATTCACCCAGACCCGGGCC
CTTGCCTTTTCGTTCGCTTGTGATGCGTTTCGATGGGACCCTTTTTCGAA
GACTGGTCAGCCCCGAACGAATGACTACCCTCTCTTGTCTCGCTCCCCTC
CGCTTTAAGTGCTGTTTTACGGCGGTCTTTCTCGGGTGCGGGTGCGGACG
CGTGCAGGCGGCTTGGCGCCAACGAGCGGTGCGACCAGTGCACGAATG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig9693:299..4846- >mRNA_L-elsbetiae_contig9693.18664.1 ID=mRNA_L-elsbetiae_contig9693.18664.1|Name=mRNA_L-elsbetiae_contig9693.18664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig9693:299..4846- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCATCCGCATGGGTCGAACAATGGGCACCCTTGACCGCCTCAGGCAG
TTGCAGGGTCAGGAGATCAGAAACCTCAGGGCGCAACTCGAGGGAATACA
ACGAAGGGTACAGCGACCTGCGATCAGGGTGCCCAGTCAATAAACAGCAG
TCTTGGGGCAGGCGGGCTTTCGTCGCCCGTGCTCTGGCTGTCGTTGTTGT
TGTTGGAATCGATCGGCGAGACGTCGGGCGCGCGCTGGTTTTGGAGGCTA
AGCCGCTCTCCTCGCTTGCGAAGGAGTGGTATCCTGTTGCCGGGCGAGGC
ACCTGCTGGAGCTGCGGCTCTGCCTTTGTCTTCCGGCACCAAACGTGGAC
AGCATGTTCCATGGGCGGGGAGACCAGATGTCATCCGCATGGGTCGAACA
ATGGGCACCCTTGACCGCCTCAGGCAGTTGCAGGGTCAGGAGATCAGAAA
CCTCAGGGCGCAACTCGAGGGAATACAACGAAGGGTACAGCGACCTGCGA
TCAGGGTGCCCAGTCAATAAACAGCAGTCTTGGGGCAGGCGGGCTTTCGT
CGCCCGTGCTCTGGCTGTCGTTGTTGTTGTTGGAATCGATCGGCGAGACG
TCGGGCGCGCGCTGGTTTTGGAGGCTAAGCCGCTCTCCTCGCTTGCGAAG
GAGTGGTATCCTGTTGCCGGGCGAGGCACCTGCTGGAGCTGCGGCTCTGC
CTTTGTCTTCCGGCACCAAACGTGGACAGCATGTTCCATGGGCGGGGAGA
CCAGGCGCGCCGTGCGCTCCGAGCCCAGTTGGTGTTGCTGTGCGAGGGTG
ACCACCACTGCTTTGGTTGGGTCTCAGTTGGTGGCTGGGGCAGGCGCGCC
GTGCGCTCCGAGCCCAGTTGGTGTTGCTGTGCGAGGGTGACCACCACTGC
TTTGGTTGGGTCTCAGTTGGTGGCTGGGGCAGGAGGCCATCTCCACCGCA
AGCGCGACAGCTTGCGGGAGCGCACGCCACGATGAGAGGCCATCTCCACC
GCAAGCGCGACAGCTTGCGGGAGCGCACGCCACGATGA back to top
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