mRNA_L-elsbetiae_contig9689.18658.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9689.18658.1
Unique NamemRNA_L-elsbetiae_contig9689.18658.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9689.18658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9689contigL-elsbetiae_contig9689:2836..3164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.8099723-UTR-L-elsbetiae_contig9689:2835..28611622817032.8099723-UTR-L-elsbetiae_contig9689:2835..2861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9689 2836..2861 +
1691683996.5820487-UTR-L-elsbetiae_contig9689:2835..28611691683996.5820487-UTR-L-elsbetiae_contig9689:2835..2861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9689 2836..2861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.8248763-CDS-L-elsbetiae_contig9689:2861..31641622817032.8248763-CDS-L-elsbetiae_contig9689:2861..3164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9689 2862..3164 +
1691683996.5965745-CDS-L-elsbetiae_contig9689:2861..31641691683996.5965745-CDS-L-elsbetiae_contig9689:2861..3164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9689 2862..3164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9689.18658.1prot_L-elsbetiae_contig9689.18658.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9689 2862..3164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9689.18658.1

>prot_L-elsbetiae_contig9689.18658.1 ID=prot_L-elsbetiae_contig9689.18658.1|Name=mRNA_L-elsbetiae_contig9689.18658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MPGCPFGYTYTEAGGGIVGLQADASVNDMGSLAPNAPKRGASANNTLLGW
EASAVRHRPPCPITLPYSPYRLSCDGVELGDVAALSTLRRCRGRTGHSLY
G
back to top

mRNA from alignment at L-elsbetiae_contig9689:2836..3164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9689.18658.1 ID=mRNA_L-elsbetiae_contig9689.18658.1|Name=mRNA_L-elsbetiae_contig9689.18658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=329bp|location=Sequence derived from alignment at L-elsbetiae_contig9689:2836..3164+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGATGCAAGGGCAAGGCTGTTGGAATGCCTGGTTGCCCGTTTGGCTAC
ACCTACACCGAGGCGGGAGGGGGTATTGTCGGCCTTCAGGCCGACGCCAG
CGTCAACGACATGGGGTCCCTAGCGCCCAACGCGCCTAAGCGTGGCGCCA
GCGCAAATAATACATTGCTAGGGTGGGAGGCGTCCGCAGTACGGCACCGG
CCGCCTTGCCCTATCACTTTGCCTTACTCGCCATACCGTTTATCATGTGA
CGGTGTTGAATTGGGCGACGTTGCGGCTCTGAGTACGTTGAGACGGTGTC
GAGGTCGCACAGGGCATAGTCTATATGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9689:2836..3164+

>mRNA_L-elsbetiae_contig9689.18658.1 ID=mRNA_L-elsbetiae_contig9689.18658.1|Name=mRNA_L-elsbetiae_contig9689.18658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig9689:2836..3164+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGTTGCCCGTTTGGCTACACCTACACCGAGGCGGGAGGGGGTAT
TGTCGGCCTTCAGGCCGACGCCAGCGTCAACGACATGGGGTCCCTAGCGC
CCAACGCGCCTAAGCGTGGCGCCAGCGCAAATAATACATTGCTAGGGTGG
GAGGCGTCCGCAGTACGGCACCGGCCGCCTTGCCCTATCACTTTGCCTTA
CTCGCCATACCGTTTATCATGTGACGGTGTTGAATTGGGCGACGTTGCGG
CTCTGAGTACGTTGAGACGGTGTCGAGGTCGCACAGGGCATAGTCTATAT
GGCATGCCTGGTTGCCCGTTTGGCTACACCTACACCGAGGCGGGAGGGGG
TATTGTCGGCCTTCAGGCCGACGCCAGCGTCAACGACATGGGGTCCCTAG
CGCCCAACGCGCCTAAGCGTGGCGCCAGCGCAAATAATACATTGCTAGGG
TGGGAGGCGTCCGCAGTACGGCACCGGCCGCCTTGCCCTATCACTTTGCC
TTACTCGCCATACCGTTTATCATGTGACGGTGTTGAATTGGGCGACGTTG
CGGCTCTGAGTACGTTGAGACGGTGTCGAGGTCGCACAGGGCATAGTCTA
TATGGC
back to top