mRNA_L-elsbetiae_contig9686.18657.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9686.18657.1
Unique NamemRNA_L-elsbetiae_contig9686.18657.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A830CCS8_9LAMI (Myb-related protein 3r-1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CCS8_9LAMI)

HSP 1 Score: 65.1 bits (157), Expect = 3.480e-10
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   18 ELRKGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQWM-VELVFPG 299
            +L KG W + ED +L++ +  Q++    + + W  IA+ +PGR+  QCR RW  +L+P +N + W  EE ++L  A   +G   +W  +  + PG
Sbjct:  125 DLVKGPWSKEEDKLLVKLVEKQSE----KKMKWAEIATQLPGRMGKQCRERWHNHLNPEINKSAWTIEEEKVLINAHSVYGN--KWSEIAKILPG 213          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A5N6NFH3_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFH3_9ASTR)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-8
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELL 236
            KG+W+  ED +L++ +             W  IA+ +PGRIA QCR+RWQ +L P +    W +EE +LL
Sbjct:   56 KGQWNSQEDGLLVQLVKEHGDSK------WSRIAAKLPGRIAKQCRDRWQNHLRPDITKDAWSEEEDKLL 119          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A8K1FB42_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FB42_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-8
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 3
Query:   21 LRKGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQW-MVELVFPG 299
            L KG W  +E+D+ ++ M  Q          W  +A+ +PGR A QCR RW+ +L P +N  P+  EE  ++++A  Y   D +W  +  + PG
Sbjct:   88 LVKGHWG-HEEDLALQEMVLQG------CHSWSEVAAQIPGRTAKQCRERWRNHLDPSINRAPFTPEEDNIIQQA--YERLDNRWTQIAELLPG 172          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A383WD91_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD91_TETOB)

HSP 1 Score: 60.1 bits (144), Expect = 2.210e-8
Identity = 34/86 (39.53%), Postives = 44/86 (51.16%), Query Frame = 3
Query:   18 ELRKGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQW 275
            EL KG W + ED ++IE +     G       W  IAS++PGRI  QCR RW  +L+P +N + W  EE E L       G   QW
Sbjct:   96 ELIKGCWTKEEDRLIIELV--ATHGAKK----WSLIASNLPGRIGKQCRERWHNHLNPDINRSEWTREEDEQLVALHASIGN--QW 173          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A2U1N189_ARTAN (Homeodomain-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N189_ARTAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-8
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELL 236
            KG+W+  ED +L++ +             W  IA  +PGRIA QCR+RWQ +L P +    W +EE +LL
Sbjct:   60 KGQWNSDEDRLLVQLVKQHGDSK------WSQIAEKLPGRIAKQCRDRWQNHLRPDITKDAWSEEEDKLL 123          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A251TUZ6_HELAN (Putative homeodomain-like protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUZ6_HELAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.900e-8
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELL 236
            KG+W+  ED +L++ +             W  +A  +PGRIA QCR+RWQ +L P +    W +EE +LL
Sbjct:   56 KGQWNSQEDRLLVQLVKQYGDSK------WSRVAEKLPGRIAKQCRDRWQNHLRPDITKDAWSEEEDKLL 119          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A7J7IRZ5_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRZ5_9RHOD)

HSP 1 Score: 59.7 bits (143), Expect = 2.930e-8
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQWMVELVFPG 299
            KG W   ED  +IE +    +        W  +A+ + GR   QCR RW  +L+PG+N +PW +EE ++L      FG +R  ++    PG
Sbjct:  167 KGAWTAAEDARIIELVRQIGEK------SWSRLATFLEGRTGKQCRERWFHHLAPGVNKSPWTEEEEQVLREKHAEFG-NRWALIARYLPG 250          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A2R5G948_9STRA (Transcription factor MYB98 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G948_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.470e-8
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQWMVELVFPG 299
            KG W   ED  L + +    +   P+   WK IAS++PGRIA QCR RW  +L PG+   PW  EE + +  A    G     M +L+ PG
Sbjct:  225 KGTWTAEEDKQLCQLV----ERFGPKK--WKVIASELPGRIAKQCRERWCHHLCPGIRKGPWTKEEDKTIIAAHQRLGNRWAEMAKLL-PG 308          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A168KEY8_MUCCL (Homeodomain-like DNA binding domain-containing transcription factor n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168KEY8_MUCCL)

HSP 1 Score: 58.9 bits (141), Expect = 4.840e-8
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 3
Query:   21 LRKGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELLERAQGYFG 260
            + KG+W +YED  L EA++Y         + W  IA ++P R   QC+ RW   L P +    W  EE + LE A   +G
Sbjct:   70 VHKGKWSKYEDQALTEAVHYYQTITSSMALPWNRIAENIPHRTGIQCQARWTEALDPTVRKGRWHPEEDKQLEVAIAKYG 149          
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Match: A0A6S7LCP3_LACSI (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A6S7LCP3_LACSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.660e-8
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 3
Query:   27 KGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQCRNRWQGYLSPGLNTTPWLDEEMELL 236
            KG+W+  ED +L++ +             W  IA  +PGRIA QCR+RWQ +L P +    W +EE +LL
Sbjct:   64 KGQWNSDEDRLLVQLVTQHGDTK------WSKIAEKLPGRIAKQCRDRWQNHLRPDITKDAWSEEEDKLL 127          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9686.18657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A830CCS8_9LAMI3.480e-1032.63Myb-related protein 3r-1 n=1 Tax=Phtheirospermum j... [more]
A0A5N6NFH3_9ASTR1.070e-838.57Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A8K1FB42_PYTOL1.500e-832.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A383WD91_TETOB2.210e-839.53Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2U1N189_ARTAN2.820e-838.57Homeodomain-like protein n=1 Tax=Artemisia annua T... [more]
A0A251TUZ6_HELAN2.900e-837.14Putative homeodomain-like protein n=1 Tax=Helianth... [more]
A0A7J7IRZ5_9RHOD2.930e-832.97Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A2R5G948_9STRA3.470e-838.46Transcription factor MYB98 n=1 Tax=Hondaea ferment... [more]
A0A168KEY8_MUCCL4.840e-835.00Homeodomain-like DNA binding domain-containing tra... [more]
A0A6S7LCP3_LACSI5.660e-838.57Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9686contigL-elsbetiae_contig9686:4737..5760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue4e-12
Seed eggNOG ortholog2880.D7G3Y8
Preferred nameMYBL2
KEGG koko:K09420,ko:K09422
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons3
Model size299
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9686.18657.1prot_L-elsbetiae_contig9686.18657.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9686 4748..5760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.7368748-UTR-L-elsbetiae_contig9686:4736..47471622817032.7368748-UTR-L-elsbetiae_contig9686:4736..4747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9686 4737..4747 +
1691683996.5406303-UTR-L-elsbetiae_contig9686:4736..47471691683996.5406303-UTR-L-elsbetiae_contig9686:4736..4747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9686 4737..4747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.748939-CDS-L-elsbetiae_contig9686:4747..48191622817032.748939-CDS-L-elsbetiae_contig9686:4747..4819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 4748..4819 +
1691683996.5513163-CDS-L-elsbetiae_contig9686:4747..48191691683996.5513163-CDS-L-elsbetiae_contig9686:4747..4819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 4748..4819 +
1622817032.7626631-CDS-L-elsbetiae_contig9686:5037..52021622817032.7626631-CDS-L-elsbetiae_contig9686:5037..5202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 5038..5202 +
1691683996.5607648-CDS-L-elsbetiae_contig9686:5037..52021691683996.5607648-CDS-L-elsbetiae_contig9686:5037..5202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 5038..5202 +
1622817032.7751129-CDS-L-elsbetiae_contig9686:5709..57601622817032.7751129-CDS-L-elsbetiae_contig9686:5709..5760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 5710..5760 +
1691683996.5718968-CDS-L-elsbetiae_contig9686:5709..57601691683996.5718968-CDS-L-elsbetiae_contig9686:5709..5760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9686 5710..5760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9686.18657.1

>prot_L-elsbetiae_contig9686.18657.1 ID=prot_L-elsbetiae_contig9686.18657.1|Name=mRNA_L-elsbetiae_contig9686.18657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MVELRKGRWHRYEDDMLIEAMYYQAQGLPPELICWKNIASDVPGRIAYQC
RNRWQGYLSPGLNTTPWLDEEMELLERAQGYFGGDRQWMVELVFPG
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mRNA from alignment at L-elsbetiae_contig9686:4737..5760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9686.18657.1 ID=mRNA_L-elsbetiae_contig9686.18657.1|Name=mRNA_L-elsbetiae_contig9686.18657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1024bp|location=Sequence derived from alignment at L-elsbetiae_contig9686:4737..5760+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTGCGACCATGGTGGAGCTCCGGAAGGGACGTTGGCATCGCTACGAA GATGACATGCTGATCGAAGCCATGTACTACCAGGTCGAGCCACCAACGAA TGATAACAAAACCACCCCCCATCCACAAGGGCAAAGACTGCTCACATCCA TTCATACCTGGCAGCGCTCAACTCTCTGAGTTTAAATACACTGGAGCAGC TCCAGGCGTTACGTACGTACCAACTCGTCGGTCTCCACCGTCGACGCTCC CTGGTCTCGACTCTCCGTCTTTCATGCTGGCTTGCCGTTCACCTTTCATA GGCGCAGGGTCTTCCGCCGGAGCTCATCTGCTGGAAGAACATCGCGTCAG ATGTTCCGGGGAGGATCGCCTACCAGTGCCGAAATCGGTGGCAGGGCTAT CTCAGCCCTGGGCTAAACACGACTCCGTGGCTCGATGAGGAGATGGAGCT GCTGGAACGCGCACAGGTTGGGGCGGGGCATGTATCTGTCCGAGTCCTGC GACTGTATTGATCCTTCGCGTGTGCATCGCGCAGACCGTGCTCATGCACA CGGTTCCTTTCCACGCCCAATGGGTGCTCCGCCTATGTCGAGGCCAACAA TGAACATTCGTGATTAGTATGTATGTAGATCTTCATGCCAAAAACATTGC AAAACTCGGCGCGTTCAAGCAAAGAGAAAACTCAGCTGCTCGTGTGTACA GGCTAATAAAGCACAGAGGCCCAACAGAGGCAAACATCCTCATTGTGTGG GGGTGACCGAGCAAGAAGCCATAAACGCGCCAAAATATAGTTCCCTTGTC GTGGGTCCGAGGTATGTCGCGGCCTCAAAACACCGCAGTACCTTTGTTCT GGCCTAAGTTCGAAGCCTTGCTTCTTCGGGCGCAATGTGGCCTCAAACAG TTGTTTTCTCTGCGGATCTCAACCGTTCTCTCGTCTCAACATCCCACATC CCGGAAAATGACCGTTTGTGCAGGGCTACTTCGGCGGCGATCGTCAGTGG ATGGTTGAGCTAGTTTTCCCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9686:4737..5760+

>mRNA_L-elsbetiae_contig9686.18657.1 ID=mRNA_L-elsbetiae_contig9686.18657.1|Name=mRNA_L-elsbetiae_contig9686.18657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig9686:4737..5760+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGCTCCGGAAGGGACGTTGGCATCGCTACGAAGATGACATGCT
GATCGAAGCCATGTACTACCAGATGGTGGAGCTCCGGAAGGGACGTTGGC
ATCGCTACGAAGATGACATGCTGATCGAAGCCATGTACTACCAGGCGCAG
GGTCTTCCGCCGGAGCTCATCTGCTGGAAGAACATCGCGTCAGATGTTCC
GGGGAGGATCGCCTACCAGTGCCGAAATCGGTGGCAGGGCTATCTCAGCC
CTGGGCTAAACACGACTCCGTGGCTCGATGAGGAGATGGAGCTGCTGGAA
CGCGCACAGGCGCAGGGTCTTCCGCCGGAGCTCATCTGCTGGAAGAACAT
CGCGTCAGATGTTCCGGGGAGGATCGCCTACCAGTGCCGAAATCGGTGGC
AGGGCTATCTCAGCCCTGGGCTAAACACGACTCCGTGGCTCGATGAGGAG
ATGGAGCTGCTGGAACGCGCACAGGGCTACTTCGGCGGCGATCGTCAGTG
GATGGTTGAGCTAGTTTTCCCTGGGGGCTACTTCGGCGGCGATCGTCAGT
GGATGGTTGAGCTAGTTTTCCCTGGG
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