mRNA_L-elsbetiae_contig9682.18656.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9682.18656.1
Unique NamemRNA_L-elsbetiae_contig9682.18656.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A6H5K0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B6_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.650e-45
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIPEP 333
            QMLRLARH+VFWG GRVID LC SNRYQVTREA++A +P SP+LAEF G FP+RDLMREL RFGEM PLS +LEQSKK  H++LIAVL   LR+DLLVQ+ R+VTLAIPEP
Sbjct:  190 QMLRLARHLVFWGSGRVIDALCGSNRYQVTREAIKATLPGSPVLAEFSGNFPRRDLMRELDRFGEMVPLSTILEQSKKHKHKTLIAVLMLFLRRDLLVQVHRYVTLAIPEP 300
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: D8LIA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.680e-34
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIPEP 333
            QMLRLARH+VFWG GRVID LC SNRYQVTREA++A +P SP+LAEF G+FP+RDLMRELTRFGEM PLS +LEQSKK                     + R+VTLAIPEP
Sbjct:  393 QMLRLARHLVFWGSGRVIDALCGSNRYQVTREAIKATLPGSPVLAEFSGKFPRRDLMRELTRFGEMVPLSTILEQSKK---------------------VHRYVTLAIPEP 482
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A835Z9L1_9STRA (Nitrogen permease regulator of amino acid transport activity 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.490e-10
Identity = 39/110 (35.45%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIPE 330
            Q+ +L+ H+V+WG GRVIDT+  +N YQVT  +       S   A FR +FP++ L + L +F     L  VL+ ++++    L+ ++ +LL+   LVQL+ ++ LA+P+
Sbjct:  415 QVYQLSSHLVYWGRGRVIDTIAMTNIYQVTAGSDIGHHSRSS--AAFRLKFPRQSLAQTLAQFSSGQSLQEVLQSTEQAQRLQLLQMVVWLLQHGFLVQLREYLALAVPQ 522
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A1S8W7X8_9FUNG (Nitrogen permease regulator 3 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W7X8_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 2.470e-8
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            Q+ RLA H+  W   R+I  +   N Y V+ +A  +++P+  L  EF  RFP+ +L+R L       P SA+     K S    + ++TFLLRK+L+VQL  ++ L+IP
Sbjct:  665 QIYRLAAHLYVWHKARIIHVVSNRNVYIVSPQAQLSELPA--LSIEFSSRFPQIELVRILQELSIPRPYSAIAPS--KESRNLYLEIITFLLRKNLVVQLHMYIYLSIP 769
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: F4P7C7_BATDJ (Nitrogen permease regulator 3 n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P7C7_BATDJ)

HSP 1 Score: 62.4 bits (150), Expect = 7.910e-8
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            Q+ RLA H+  W   ++I  +   N Y V+ +A  +++P   L  EF  RFP+ +L+R L       P SA+     K +    + ++TFLLRK+L+VQL  ++ L++P
Sbjct:  545 QIYRLAAHLYVWSKAKIIHVVSNRNVYIVSPQAQLSELPK--LSTEFSSRFPQMELVRILQDLSIPRPYSAIAHS--KENRNLYLEIITFLLRKNLVVQLHMYIYLSVP 649
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A2D4BQI5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQI5_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 1.910e-7
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            ++ R A H+V+WG GRVIDT+   N YQV      A  P SP   EFR RF  R+L   L+ F     +   ++    +     I +L +L +  +++QL R+V   IP
Sbjct:  412 RVFRXAAHLVYWGYGRVIDTITMHNIYQVAPTCSFA--PHSPXALEFRRRFAPRELCEVLSNFLGTRRIGEYVKNLTAAKKVEYIHILIWLXQHSMVIQLHRYVYFMIP 518
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A662XAZ2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAZ2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.970e-7
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            Q+ RLA H+V+WG GR++DT+   N YQV+ +A       +PL  EFR +F   +L   L  F     +   ++    +     + +L +LL++  +VQL R++   IP
Sbjct:  455 QLFRLAAHLVYWGFGRIVDTITLHNIYQVSAQA--DLHTQAPLAVEFRRKFAPYELGEVLATFSGSRRIGEYMKSLSPAKKAEYVHMLIWLLKQRFVVQLHRYIYFMIP 561
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A8K1CQC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQC2_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 4.620e-7
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP---EPYLDS 345
            Q+ RLA H+V+WG GRVIDT+   N YQV       ++ S+  L EFR +FP  +L   L+ +     +   ++          I +L +LL+ D ++QL R+V   +P   +P  DS
Sbjct:  361 QLFRLAAHLVYWGYGRVIDTITMHNIYQVHPNC-SLRVQSACAL-EFRRKFPPHELCEILSSYAGSRRIGEYVKSLSSIKKIEYIHMLIWLLQHDFVIQLHRYVYFMVPSDHDPLSDS 476
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: K3X712_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X712_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 2.150e-6
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:    4 MLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQ-SKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            + RL+ H+V+WG G+VIDT+   N YQV  +A       S L   FR +FP  +L   L+ F     +S  ++  S   +    I +L +LL+++ ++QL R+V   IP
Sbjct:  401 VFRLSAHLVYWGFGKVIDTITLRNIYQVNPQANLRS--QSALALAFRRKFPPHELSEVLSTFSGSRSISDYMKSLSTPKAKTEYIHMLIWLLQQNFIIQLHRYVYFMIP 507
[Close]
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Match: A0A167NJR4_PHYB8 (Nitrogen permease regulator 3 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167NJR4_PHYB8)

HSP 1 Score: 54.7 bits (130), Expect = 2.940e-5
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:    1 QMLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRFPKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQRFVTLAIP 327
            QM RLA H+++W   ++I T+   N Y V+  A    IP+  L  +FR   P  D    L++     PL  +   SK+  ++ L A+ T+L+RKDL+VQL  F+ L +P
Sbjct:  285 QMYRLAAHLIYWRKAKLIHTIHVRNHYVVSPLAKLDDIPA--LDRDFRLHIPNLDFPTLLSQLSIAKPLYKIAP-SKEFRNQYLEAI-TYLVRKDLVVQLHMFLVLVLP 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9682.18656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K0B6_9PHAE1.650e-4574.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIA8_ECTSI4.680e-3463.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9L1_9STRA2.490e-1035.45Nitrogen permease regulator of amino acid transpor... [more]
A0A1S8W7X8_9FUNG2.470e-836.70Nitrogen permease regulator 3 n=1 Tax=Batrachochyt... [more]
F4P7C7_BATDJ7.910e-833.94Nitrogen permease regulator 3 n=2 Tax=Batrachochyt... [more]
A0A2D4BQI5_PYTIN1.910e-734.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662XAZ2_9STRA1.970e-732.11Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8K1CQC2_PYTOL4.620e-733.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X712_GLOUD2.150e-633.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A167NJR4_PHYB82.940e-535.78Nitrogen permease regulator 3 n=1 Tax=Phycomyces b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9682contigL-elsbetiae_contig9682:660..6466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog2880.D8LIA8
Preferred nameNPRL3
KEGG koko:K20406
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001568,GO:0001944,GO:0003006,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0006950,GO:0006995,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007507,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010507,GO:0010508,GO:0010646,GO:0010648,GO:0010896,GO:0010898,GO:0014706,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016242,GO:0019216,GO:0019222,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0032006,GO:0032007,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035239,GO:0035295,GO:0035556,GO:0035859,GO:0035904,GO:0035909,GO:0038202,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045792,GO:0045834,GO:0048468,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048731,GO:0048738,GO:0048844,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051128,GO:0051704,GO:0051716,GO:0060021,GO:0060537,GO:0060840,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090066,GO:0090207,GO:0090208,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1904766,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.TORC1 signaling
EggNOG OGsKOG3830@1,KOG3830@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons6
Model size630
Cds size627
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.6212895-UTR-L-elsbetiae_contig9682:659..6621622817032.6212895-UTR-L-elsbetiae_contig9682:659..662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9682 660..662 +
1691683996.4585996-UTR-L-elsbetiae_contig9682:659..6621691683996.4585996-UTR-L-elsbetiae_contig9682:659..662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9682 660..662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.6334078-CDS-L-elsbetiae_contig9682:662..7431622817032.6334078-CDS-L-elsbetiae_contig9682:662..743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 663..743 +
1691683996.4728694-CDS-L-elsbetiae_contig9682:662..7431691683996.4728694-CDS-L-elsbetiae_contig9682:662..743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 663..743 +
1622817032.6469827-CDS-L-elsbetiae_contig9682:2336..24261622817032.6469827-CDS-L-elsbetiae_contig9682:2336..2426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 2337..2426 +
1691683996.4936194-CDS-L-elsbetiae_contig9682:2336..24261691683996.4936194-CDS-L-elsbetiae_contig9682:2336..2426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 2337..2426 +
1622817032.661061-CDS-L-elsbetiae_contig9682:2816..28761622817032.661061-CDS-L-elsbetiae_contig9682:2816..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 2817..2876 +
1691683996.5056608-CDS-L-elsbetiae_contig9682:2816..28761691683996.5056608-CDS-L-elsbetiae_contig9682:2816..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 2817..2876 +
1622817032.6744232-CDS-L-elsbetiae_contig9682:3520..35831622817032.6744232-CDS-L-elsbetiae_contig9682:3520..3583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 3521..3583 +
1691683996.5141711-CDS-L-elsbetiae_contig9682:3520..35831691683996.5141711-CDS-L-elsbetiae_contig9682:3520..3583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 3521..3583 +
1622817032.6866107-CDS-L-elsbetiae_contig9682:4889..50521622817032.6866107-CDS-L-elsbetiae_contig9682:4889..5052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 4890..5052 +
1691683996.5228975-CDS-L-elsbetiae_contig9682:4889..50521691683996.5228975-CDS-L-elsbetiae_contig9682:4889..5052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 4890..5052 +
1622817032.6986516-CDS-L-elsbetiae_contig9682:6296..64661622817032.6986516-CDS-L-elsbetiae_contig9682:6296..6466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 6297..6466 +
1691683996.5313993-CDS-L-elsbetiae_contig9682:6296..64661691683996.5313993-CDS-L-elsbetiae_contig9682:6296..6466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9682 6297..6466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9682.18656.1prot_L-elsbetiae_contig9682.18656.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9682 663..6466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9682.18656.1

>prot_L-elsbetiae_contig9682.18656.1 ID=prot_L-elsbetiae_contig9682.18656.1|Name=mRNA_L-elsbetiae_contig9682.18656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MLRLARHMVFWGDGRVIDTLCASNRYQVTREAMEAKIPSSPLLAEFRGRF
PKRDLMRELTRFGEMCPLSAVLEQSKKSSHESLIAVLTFLLRKDLLVQLQ
RFVTLAIPEPYLDSDSDSDSDSGSDSDSDSDGSDRTEDDFDGAHDSGSGN
HAARSNATPTTVSPGGGGGGGRAGAPLTGNNLQGGSSWSFAVRDDSEWGA
GRGGGGGSG
back to top

mRNA from alignment at L-elsbetiae_contig9682:660..6466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9682.18656.1 ID=mRNA_L-elsbetiae_contig9682.18656.1|Name=mRNA_L-elsbetiae_contig9682.18656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5807bp|location=Sequence derived from alignment at L-elsbetiae_contig9682:660..6466+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATGCTTCGACTGGCGCGGCACATGGTATTCTGGGGGGATGGCCGAGT
GATCGATACCCTGTGCGCGAGTAATCGGTATCAGGCAAGAACTTGATTTC
CGTCGAACCGCTTTTGTTGAAAGCCGGGTGGCCAAGAAAGCTCATTTGCC
TTCGTCCAGTCACAACTTTTCAAGGACAATGAAGATTTGGCAGGAGCTTG
GCATATCCTTTGGATCGGCCAATCACAAGCGTGTGTCCCCGGTTGGATCG
TTTAGCTAGTCGTAGTGGAGGGAGGGGGTTAGTGGGGCAGACGACGAATA
AGCCAAAAATGGCAGGAAACATGTATATATATATATGCGAATTTGCACAC
ATCCCTCTGAAAGGGCGCTATTTGGACACGTTCTCTCAAACTAAGAATCT
ACTCTCCGCATTTGGTGTACTTGTAGTAGGGGTTCAGCTCTGCCCGCCCC
CCTTCAGTTGGAGTTGAGGCTGGGGAGATACGCCAAGCTTTGCCTCGCGC
TTTGTTTCGTGTTTGGCGCAGCCAGGCACCCCCCCCCCCCCCGAGACAGC
TAGTCCGCATTTTGCGGAGCCGCCACACGCGCTGTATTTTTGTGCAGCTC
AAGAGGTCCCCACCTCTTCGCTGTGTTTTTCGTGTTCGGAGGCTGGGGGA
TGTATGGGTGGTGATTGGTGTGGGGTTTGCGTGCGTGAGTTCGCACAGGG
GGGCGATAGCTTTCGACGGCCCAGTATCTCGACAATGGAGAGGGTACCGG
TCTCGAAGACCCGGCTGTCGGAAAGGCGTCGTTTGAGCCAGATCTTCCCG
ATAACACCCTCTGCGACGTTGGCACCCAGTCCCCGTTGTCGACGGATCGG
GCCGCGCAAGACTGTCGCATCCTTGTGCGAACTCACGTATGTATGGCACA
CACTTTTAAGTAAGAAACGGAGAGTATGTATCTACCTGCACTAAATAGAT
CCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCAGCGAGAAAAATGA
CAATGCCGAAAGGGGTGGCGTTGGAAAAATCTAGTCAATGGCTGTCCGAA
AATGTGTTGTTTGGAGCTGGCACCTTCTTCGTTACGGAGTAATCGAGCTC
TAAAATTCGATCCAGGGGATGTGGTATCTTGTATCTACCTGCACGATGTT
ACATGCATGATATACCGTAATCATGCGTGAGTTCGCCCCCCGGACCGACT
TTCAACGTTCCATCACTCCGTAACGAAGACGGTGGCAAAACACCAAACGA
CACGTTTTCGGACGGCTATTTATCTGGCGAGATCTTTCCAACGCCACCCT
TTTCGGCACTCGACACTCTTCCTGCTGTGGAATAATTAGTCGAGCTTTAA
AAGTCGGTCCCAGCGGGGGGGGGGGGTGCGAACAACACGCATGATTACGA
TATCTGCACGATATTACGTGCAGGATATACACATGCGCACGGGATAAAGC
AAAGTTGAGCCACCGACGACGATCCACTATTTAATGCGACAAGCACGCAG
CCTTCGAAAACTACTCAGCAACACTGGTTGGTGTAGGAGGCACACCACTG
CCCGGCCGTCTGGTACCCAGGGGGATGCTGCCTCGAGCGCCCCTGCCGGT
CAACGGTGAATAATCGCTTGACCCGGTGCCTCCTCTATACGTTACCGCCG
GTGCTGCTTTTTGCGGGTGCCCCGCAGGTGACGAGAGAGGCCATGGAGGC
GAAGATACCCAGCTCCCCGCTGCTGGCGGAGTTTCGCGGGCGGTTTCCTA
AGCGGGACCTTATGCGTGTGAGTACATGTCCCTCTCCCTCTGTCACTGCC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTC
CCTCTCCCTCTCCCCCTCTTGTCTGTCATGCCGTGTTAGCGGTGTTTTGG
TTTATGAAAGCAATTGGCACCGCGCACCCTCCACCTCCCTCAGGCGTGAA
GTCTCGTGCAATCATACTTTCTTCCCCCTCGCGCATGCATGCATTGATTT
TTCGTTTGATTTATTTACATGGCCGTTTTGTCTTACAAAAAGTCTCTTTG
TTGAGTGCTTTCTTGTGCTGGTTTTGTCTCTTGTTTAAAACCAGGATCCC
TGTTTAAGACCCAACCCCGAACCGTGGCGTTCCCCCCCCCTGCTGTATGC
TCTGCAGGAGCTCACCCGGTTCGGCGAGATGTGCCCCCTGTCGGCGGTCC
TAGAGCAGAGCAAGAAGGTGAATGAGAGAGGCCGCGATGAAGAAAGGGGG
AGAGCAAGGGCTCAGCGCCGCTGCTGTGTGTATGTGTACGCATACATTTT
GCGATTAAACGGACTGCGCTGGAAATATCGCACCACTGCTCTGTCTGTGT
TGAGAGAGCGGTATTTTTCCGAGAATGGATCGTTCGCTATTTTGGTACCA
AACCCTTGGAAGTGGACGACTCGCGGGCCCTCGGCCGAGTGGGCGCACGG
ATTCAAATTTAGGGCCCTATTGCCCCCTCCCAAATTCACGCTCAGATCAG
TTGGTTCTTATGTATACCATGTATGGTTGGTTATATAGAAATTTCGTAAA
CGGGGGTTCCGCAGGGTTGGGGGTACCCAACGTCCGCGGGTTGTGCATGG
GACATAGCTACCCCTACGGACACAGTTATTGACAGTCCAGGTTTAGGGCG
GTATGAATCAGCTGGTGTGAATCCGTGTGCCATCCTGAGTCGGCCATATT
GGGTTCATATCTGAAGGCCACAGACGCGCGTTTTCTCGACCGGCGCCGCC
CACCCACACCCCCGCGAGCGCACGCGTCGGGCAGCAGAAACTCCTTGTCG
CCCGATCCTATGTACCCTCCGCGTTGCTGTGCCCCTCCTCCCTTGCCGTG
GAAACCTCAAGTCCTCGCACGAGTCCCTGATCGCGGTGCTGACGTTCCTG
CTGCGGAAAGACCTTCTGGTGCAGGTGAGGTGATGCTCCCTCTCTCTTTA
TGTGCGTGCTTGTCTGCGTTTTTTTCTGTCAAGAAGCTTTTTTTTTATTA
CGTCACTACACATGTTGTAATGGAATGCCGGTTGAATCCCGCGGATTCCC
TTCTATAATGTGTGGGCCAAGTTGCCATTATTGATTCACTGATTTTCTTT
CAAAATGTTCCAACTGGACACGAAATATCAGCGGCCTGCGTACGCCCGCC
CGACCCTTGAAAAACAGAAAATCGCTCCGGGGGGACTGTTTTAACCCCAC
TGCGTATGTAACGCCCCACCAAGGTACAGGCGCCAAAATTGCAAATTCCT
TTTTGTCGGGTTGTTTTTTCTTTCTTCTTTCAGTATAGTAATATACCCTT
TTTTAGGGTAAGTTATCCTGTGACCACGGGAACAGACCGCGTCAGTGTTG
GATTAGTAAGGACTCATGGAGGTAGGTGTGCTGGATAGAGAGATCGGAAC
GGTCTTTAATGCGAAGACAACAGCACACGCAAGTAGTGGGCCCCGTGCGG
TGCGTTGTGTGGCGTTGCTGTGTTGGAACGATTATGACTTACGACGACGT
GGGTTTCCCCAGGGTTGGTTCGTGTTGGATTTTTTGCGGTTCTGTTCCGT
CGGTATGTATGCATGTTCGCGCCCACTCGCGGACGGGGCTGGCCGGTCTC
CCAGTCTCTCCCTTATTTTTCTACTACGATAAAGGTCAGCGGTAGCCTGC
GTCCATCTTTTGGGTGTAGGCATTCCAGGAGAACTGTCTTTAGAGGCTCT
ATGTAGCATCTACATTTACCGTCCCCACCTATGTACAAGGGCGCAAAAGC
CTTAAATACATTGTGTATTGTGTACGTTGTTGGGTGTATTTGATGTCAAT
ATTATTGTACGGATTGCTGATTCCGTACCTATTACCACGGACGATTACGT
GGTTAGGTATGTGTGGTGTGTGTGCCTACAACATCCCCCTGGAAACGCCG
TTTTTCACAGGTGTGTGGGCATAGTAGTTACGACGGCAGTTACGAGATTG
TGGTTCGAAACTAACGTTGCTTGTTTGGTTGGTTGAGAAAAATAATCCAT
GTACAATTAATCAATCACTTTCAGTCGTTCTTCTGTGGCTACTTTTTACG
AGGACGATTTTTTCGGAGGGTTTCGTCGGTTTGGTTCGCTGTGCTGCTCG
TTTTGCTATGTAGTTGGCCGGCAATAAGCAGCAGCAGCAGCAGGTTTAGA
AGGAATGCCACTGCCTAGAGACCGCCGCCACCACCACCACCACCACCACC
GCCCCCGCCACCGCCCCTTTTTCTTGCCAGCTGCAACGGTTCGTGACCCT
CGCCATCCCCGAGCCGTACCTCGACAGCGACAGCGACAGCGACAGTGACA
GCGGCAGCGACAGCGACAGCGACAGCGACGGCTCCGACCGCACCGAAGAC
GACTTCGACGGCGCCCACGACAGCGGCAGCGGCAACCACGCCGGTGAGAC
CCAGACCTGGGTTGTGCTCTGGCGCGGGCACCGCCTTTGATACGTAGTAC
CGGTGCCGTAGCCCCGTAGTTCGTATTGAAGCGGGGGAACAACCCGGGCC
TGATCTAAAGGCGGAGGGAGGCTGCTGTGGGACGTGCTCCGTACGGGGGA
GGTTAGCCTTGGAAGGAGGGATTGGGTTGTGCGCCGTCTGAACAGTGGCT
GCGGTTGCGCAGCCCGTGAGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTC
GCATTAGCTATCTAGTCCAAAATATCATTGGGGGCCCGTGGCCACAAAAC
AGCCCGTGAGTGTGAGGCGATGAATGTGCAATTGCAATTGCGCGTTGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTGACGATGGCGGTG
GTGTTGGTGGTGGCCGTCTTGGGTGGACATGGTGCAAACGATGGGCGCCC
CCTTTTTGGTGAAACCGTTGTCGATATGTATCGGATGTCGACGTATGTAT
CGCGCGCCGCGTGCTTCCGCTCTGCAGGCATTGGTTGGTTGCCCTCGAGA
TTCGGTACCGTAGAAACCAGGTGCACTCTTGGGAGGCAAGAGCTCAGTTT
CATCAAAGTTTCGCACGAAAAGCTGTCGTCAACCGCAGCAGTTGTGGGCC
TCAAGCGCACAAGCACGCTGGACTATTCGGCATATTGTACCACAGAACAG
ACCCACCATCTTGGGGCGCTTTTTGCCGACCGAGTAAACCGCATACGTCA
TGGAGGGCGGCAAATCCGCAGTCGGCTGGTATCTTCGTTGTCCTGACAAA
GTTGACTCCTTTCTGCAGTGTCCTGACTCCTTCCTGCAGTGTCCTGACTC
CTTTCTGCAGTGTCCTGACTCCTTTCTGCAGTGTCCTGACTCCTTTCTGC
AGTGTCCTGACTCCTTTCTGCAGTGTCCTGACTCCTTTCTGCAGTGTCCT
GACTCCTTTCTGCAGTGTCCTGACAAAGTTGACTCCTTTCTGCAGTGTCC
TGACAAAGTTGACTCCTTCCTGCAGTGTCCTGACTCCTTTCTGCAGTGTT
CTGACAAAGTTGACTCCTTTCTGCAGTCAGCGGTAGCCGACCACCCACCC
CACACAGGTGGATGAAACGATCACTCCCACCATGGAGGCAATAAAACAAA
AAGCACGCGGCGAGTGTTCTGATAATTGATTAGAGCCACGGCTTCTCTCT
CACACATAACTTACTCCCTTCGCCCTTTTTCTGACAGCGCGCTCCAACGC
TACCCCTACTACGGTGTCACCCGGTGGTGGTGGCGGTGGCGGACGCGCCG
GAGCCCCCTTAACCGGCAACAACCTTCAAGGCGGGTCGAGCTGGAGTTTC
GCCGTAAGAGACGACAGTGAATGGGGTGCTGGTAGAGGTGGCGGCGGCGG
CAGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9682:660..6466+

>mRNA_L-elsbetiae_contig9682.18656.1 ID=mRNA_L-elsbetiae_contig9682.18656.1|Name=mRNA_L-elsbetiae_contig9682.18656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig9682:660..6466+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGACTGGCGCGGCACATGGTATTCTGGGGGGATGGCCGAGTGAT
CGATACCCTGTGCGCGAGTAATCGGTATCAGATGCTTCGACTGGCGCGGC
ACATGGTATTCTGGGGGGATGGCCGAGTGATCGATACCCTGTGCGCGAGT
AATCGGTATCAGGTGACGAGAGAGGCCATGGAGGCGAAGATACCCAGCTC
CCCGCTGCTGGCGGAGTTTCGCGGGCGGTTTCCTAAGCGGGACCTTATGC
GTGTGACGAGAGAGGCCATGGAGGCGAAGATACCCAGCTCCCCGCTGCTG
GCGGAGTTTCGCGGGCGGTTTCCTAAGCGGGACCTTATGCGTGAGCTCAC
CCGGTTCGGCGAGATGTGCCCCCTGTCGGCGGTCCTAGAGCAGAGCAAGA
AGGAGCTCACCCGGTTCGGCGAGATGTGCCCCCTGTCGGCGGTCCTAGAG
CAGAGCAAGAAGTCCTCGCACGAGTCCCTGATCGCGGTGCTGACGTTCCT
GCTGCGGAAAGACCTTCTGGTGCAGTCCTCGCACGAGTCCCTGATCGCGG
TGCTGACGTTCCTGCTGCGGAAAGACCTTCTGGTGCAGCTGCAACGGTTC
GTGACCCTCGCCATCCCCGAGCCGTACCTCGACAGCGACAGCGACAGCGA
CAGTGACAGCGGCAGCGACAGCGACAGCGACAGCGACGGCTCCGACCGCA
CCGAAGACGACTTCGACGGCGCCCACGACAGCGGCAGCGGCAACCACGCC
GCTGCAACGGTTCGTGACCCTCGCCATCCCCGAGCCGTACCTCGACAGCG
ACAGCGACAGCGACAGTGACAGCGGCAGCGACAGCGACAGCGACAGCGAC
GGCTCCGACCGCACCGAAGACGACTTCGACGGCGCCCACGACAGCGGCAG
CGGCAACCACGCCGCGCGCTCCAACGCTACCCCTACTACGGTGTCACCCG
GTGGTGGTGGCGGTGGCGGACGCGCCGGAGCCCCCTTAACCGGCAACAAC
CTTCAAGGCGGGTCGAGCTGGAGTTTCGCCGTAAGAGACGACAGTGAATG
GGGTGCTGGTAGAGGTGGCGGCGGCGGCAGCGGCCGCGCTCCAACGCTAC
CCCTACTACGGTGTCACCCGGTGGTGGTGGCGGTGGCGGACGCGCCGGAG
CCCCCTTAACCGGCAACAACCTTCAAGGCGGGTCGAGCTGGAGTTTCGCC
GTAAGAGACGACAGTGAATGGGGTGCTGGTAGAGGTGGCGGCGGCGGCAG
CGGC
back to top