mRNA_L-elsbetiae_contig968.18654.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig968.18654.1
Unique NamemRNA_L-elsbetiae_contig968.18654.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig968.18654.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.440e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 KVQRFSPQDLMALRRAPTRPLGKMPILGADISVIVSEEPLEPVTATPPDEEAISKIWAAAAERQPMSMRGRRSRWG 228
            KVQRFSP++L+ALRRAPTRPLGKMP+LG DIS+IVSEEPLEPVTATP D+EAIS+IWAAAAERQPM  RGRRSRWG
Sbjct:  158 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPM--RGRRSRWG 231
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BLAST of mRNA_L-elsbetiae_contig968.18654.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.110e-23
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 KVQRFSPQDLMALRRAPTRPLGKMPILGADISVIVSEEPLEPVTATPPDEEAISKI 168
            KVQRFSP++L+ALRRAPTRPLGKMP+LG DIS+IVSEEPLEPVTATP D+EAIS++
Sbjct:  197 KVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRV 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig968.18654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR20_ECTSI2.440e-3385.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUY1_9PHAE8.110e-2382.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig968contigL-elsbetiae_contig968:18696..19638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004700.1
Exons2
Model size280
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig968.18654.1prot_L-elsbetiae_contig968.18654.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig968 18726..19638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.496808-UTR-L-elsbetiae_contig968:18695..187251622817032.496808-UTR-L-elsbetiae_contig968:18695..18725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 18696..18725 +
1691683996.3645928-UTR-L-elsbetiae_contig968:18695..187251691683996.3645928-UTR-L-elsbetiae_contig968:18695..18725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 18696..18725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.507953-CDS-L-elsbetiae_contig968:18725..188601622817032.507953-CDS-L-elsbetiae_contig968:18725..18860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 18726..18860 +
1691683996.3788443-CDS-L-elsbetiae_contig968:18725..188601691683996.3788443-CDS-L-elsbetiae_contig968:18725..18860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 18726..18860 +
1622817032.519108-CDS-L-elsbetiae_contig968:19524..196381622817032.519108-CDS-L-elsbetiae_contig968:19524..19638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 19525..19638 +
1691683996.3915126-CDS-L-elsbetiae_contig968:19524..196381691683996.3915126-CDS-L-elsbetiae_contig968:19524..19638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 19525..19638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig968.18654.1

>prot_L-elsbetiae_contig968.18654.1 ID=prot_L-elsbetiae_contig968.18654.1|Name=mRNA_L-elsbetiae_contig968.18654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MALRRAPTRPLGKMPILGADISVIVSEEPLEPVTATPPDEEAISKIWAAA
AERQPMSMRGRRSRWGGGEDGPGGGGPPPPGHG
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mRNA from alignment at L-elsbetiae_contig968:18696..19638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig968.18654.1 ID=mRNA_L-elsbetiae_contig968.18654.1|Name=mRNA_L-elsbetiae_contig968.18654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=943bp|location=Sequence derived from alignment at L-elsbetiae_contig968:18696..19638+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGCAGCGCTTCTCCCCCCAGGACCTGATGGCGCTGAGGAGGGCCCC
CACGAGGCCGCTGGGCAAGATGCCGATCCTGGGTGCGGACATCTCCGTGA
TCGTCTCTGAGGAGCCGCTGGAGCCGGTGACCGCAACCCCGCCCGACGAA
GAGGCGATCAGCAAGGCAAGCTGTTTATACCATAATAAGTAGATAAACAT
GCCGTTTTTGTCACCGTTTTTTTCGGGGTATCTTTCGTGCGTGCAAGAGC
GGTTCTCGTCACAGCAGCTTCGGCCTTTTTTTTTAGACGAGAAACTCGAC
GCAGCCTTTTGAGGGAGCACACACTAGGGCATGGCATGGCATGGCAGCTT
GGGGGACAGGACCACCGCAGCCTGTTTTCGGGCTGTCGCCAGACCACAGG
CGTATGTATGTATCCCTTCAGTGTGGATTATTTTTGTGTCTTGTGGAGAC
GGCCGTCCGCTTAATGGAGTGACGTAGGGCTCCGAAACGAGTTTGATCGC
CGCGACGTGACGTCATGACGTACCATGATCATACATTCCTAAGTACGCAC
GTCGGGCGTCGCGGACTCGGATTACATCATCGTGCACTACTTTTTCGCTT
CTTTTGTTTCTTGGCAAATTCTCGTCTTTTTACTTCCTCCTCGCTTCGTT
CGTTCGTTGGTTCGGGTTTTGTTGGCGGTGATGTTGATGGGTGGTTGATC
CTCGGCCTTGCCCGTCTGAATCAATAACCCGAGAAACAATTGAATGAATT
CATTCAATTAAATGGGAAGGACACACACACACACACATTTCAATTAAACA
GTAGAATGTCGTTGATGCGCGCGACGCAGATCTGGGCGGCGGCAGCCGAG
CGGCAACCCATGAGCATGAGGGGAAGGCGTTCTCGCTGGGGCGGCGGCGA
GGACGGGCCAGGGGGCGGGGGGCCTCCCCCCCCGGGGCACGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig968:18696..19638+

>mRNA_L-elsbetiae_contig968.18654.1 ID=mRNA_L-elsbetiae_contig968.18654.1|Name=mRNA_L-elsbetiae_contig968.18654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig968:18696..19638+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTGAGGAGGGCCCCCACGAGGCCGCTGGGCAAGATGCCGATCCT
GGGTGCGGACATCTCCGTGATCGTCTCTGAGGAGCCGCTGGAGCCGGTGA
CCGCAACCCCGCCCGACGAAGAGGCGATCAGCAAGATGGCGCTGAGGAGG
GCCCCCACGAGGCCGCTGGGCAAGATGCCGATCCTGGGTGCGGACATCTC
CGTGATCGTCTCTGAGGAGCCGCTGGAGCCGGTGACCGCAACCCCGCCCG
ACGAAGAGGCGATCAGCAAGATCTGGGCGGCGGCAGCCGAGCGGCAACCC
ATGAGCATGAGGGGAAGGCGTTCTCGCTGGGGCGGCGGCGAGGACGGGCC
AGGGGGCGGGGGGCCTCCCCCCCCGGGGCACGGAATCTGGGCGGCGGCAG
CCGAGCGGCAACCCATGAGCATGAGGGGAAGGCGTTCTCGCTGGGGCGGC
GGCGAGGACGGGCCAGGGGGCGGGGGGCCTCCCCCCCCGGGGCACGGA
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