mRNA_L-elsbetiae_contig968.18652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig968.18652.1
Unique NamemRNA_L-elsbetiae_contig968.18652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 536 bits (1381), Expect = 1.000e-181
Identity = 341/545 (62.57%), Postives = 361/545 (66.24%), Query Frame = 3 
Query:   24 MTMTDRTEEFRGAVNVFRPTVVVVKNSSEAAASRAQSDLGYQKTSEFLQLASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEISEVMKLFEEDMAGLQRDISSLQRHADGKTRGSPPANSQRQMHCAFIVTTLRKSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGAAIGAGGPRRRPMRGRPAAPHPPPHSAAATVP------LGDDDEDNKGHKKRV-DGGRAAGLGLAASTAAAVVSSLPFPSG----KPGGGVGKSXXXXXXXXXQGGSPSSWPQKPG-PPPWPAEG-HNGTGYN-------GGAXXXXXXXXXASXX-----------SSGAAVAPPVGGGVFGVGGVGXXXXXXXXXTPARSNGSGIXXXXXXXXYGAAPPGVPVHPPEPPRAGGGATGLRKRPGREDGGDGEEEARRAAWQLQVQEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1565
            MTMTDRT+EF GAV+ FRPTV  V NS EAA  RAQ+DLGY+KTSEFLQLA+SVAVGFEGTS+LIGRLKKLVGRKGFSNNPAAEIS+VMKLFE DMAGLQ+DISSLQR+ADG TRGSPPANSQRQMHCAFIVTTLR+SAQEHTKAFRDAL+LRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFG+                             A +P            DNKGHK     GG+AA             S LPFPSG    + GGG G S               SWPQK   P PW AEG  NG G N       GG                         S+G   A P     FG               PA   GSG         + AAPPG P    E  R GG ATGLRKRPGREDGGD EEE+RRAAWQ+QVQEDSKTRVDESHKVEKMIGDLG MFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQI SGNRGIIIKVFIMLI+ IWVFLGLMR
Sbjct:    1 MTMTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGXXXXXXXXXX--------------XXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGKAA-------------SVLPFPSGNGGTRAGGGTGGS---------------SWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYDAVGAMPRATEPAAXXXXXXXRTDSNGGFRAGPHTAPTFG--------SANGYVPPAAGGGSG-------RAHAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A835Z5V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.720e-26
Identity = 69/184 (37.50%), Postives = 111/184 (60.33%), Query Frame = 3 
Query:   30 MTDRTEEFRGAVNVFRPTVVVVKNSSEAAASRAQSDLGYQKTSEFLQLASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEISEVMKLFEEDMAGLQRDISSLQRHADGKT--RGSPPANSQRQMHCAFIVTTLRKSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLF 575
            M DRT EF+G + V                 R Q +    + ++F +  S++A+  EGT+KLI +L +LVGRKG SN+P  EI++V +LF+ DM  +Q+++S+LQ   DG++  RG+P   SQR  H  +++  L++ AQE   AF+ AL  R AV ++ N+R++ +S +R V  + Q++ PLF
Sbjct:    1 MIDRTAEFQGCIRVLH-------QHDGRPDQRPQYEA--PQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 175
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.920e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 3 
Query: 1335 MIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 1550
            MIG+LG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ +SGNRGII+KV I+L  F+WVF
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.070e-15
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3 
Query: 1281 QVQEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1565
            ++Q  SK RV+E+  +E  I +   MFS+ +TMVA Q E+V  I+DD+E A      G   L +YY I+SGNRG+IIK+FI L++FI++F+ L +
Sbjct:   11 ELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-14
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 3 
Query: 1287 QEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1553
            Q D+ +R+ E+  VEK I +LGQ FSR + +VAAQ EVVM I+DD+EAA    ++G A +  Y +I+ GNR +I KVF +L++FI VF+
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 113
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 3.180e-14
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 3 
Query: 1284 VQEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1553
            +++ S+ R+D +H +EK IG LG++FSRFS++VA Q EVV  ++DDVE A    E G A L K  +++ GNR + +KVF +LI  I +F+
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLFV 91
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.590e-12
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 3 
Query: 1302 TRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1553
            +R +    V+K IG+L QMFS+ + +V AQEE++  I+ D+++     +EGQ HL KY+Q +S NRG+IIKVF++LI F+  F+
Sbjct:  216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFVVFFV 299
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.030e-12
Identity = 52/141 (36.88%), Postives = 90/141 (63.83%), Query Frame = 3 
Query: 1143 AAPPGVPVHPPEPPRAGGGATGLRKRPGREDGGDGEEEARRAAWQ-LQVQEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLM 1562
            AA P   +HP +P +    A G+R+RP   +G  G   A++   Q L     +++R++++  VE MIG++G M+SR + ++A QEE++  IEDD+  AH+  E G   L KY+  +S NR +I+K+F++L++FI++FL ++
Sbjct:  190 AAGPTQGLHPVQP-QGPDAAAGMRRRPFM-NGATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFLVVL 328
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BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-11
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 3 
Query: 1287 QEDSKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1553
            Q D+ +R+ E+  VEK I +LGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G   +  Y +I+ GNR +I KVF +L++FI VF+
Sbjct:  278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 366
[Close]
BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Match: A0A6G0WSE7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.180e-11
Identity = 35/86 (40.70%), Postives = 62/86 (72.09%), Query Frame = 3 
Query: 1296 SKTRVDESHKVEKMIGDLGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1553
            ++ R++++  +E  I ++G M+SR + ++A+QEE++  IEDD+  AHA  E G   L KY+  +S NR +I+K+F++L+LFI++FL
Sbjct:  224 AQARLNDAQHMEATISEIGGMYSRMTGLLASQEEMLGRIEDDMTTAHANVESGYEELMKYFSTVSSNRSLILKIFLILLLFIYLFL 309
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig968.18652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE1.000e-18162.57t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z5V3_9STRA2.720e-2637.50Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZFW2_9STRA4.920e-2469.44t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2XXW7_9STRA1.070e-1545.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CQ48_NANGC1.280e-1449.44t-SNARE coiled-coil homology domain-containing pro... [more]
F0Y6L6_AURAN3.180e-1445.56t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3H3X9_9STRA1.590e-1245.24Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A485LIS1_9STRA6.030e-1236.88Aste57867_21905 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9CWV4_9STRA1.410e-1147.19t-SNARE coiled-coil homology domain-containing pro... [more]
A0A6G0WSE7_9STRA6.180e-1140.70t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig968contigL-elsbetiae_contig968:8566..13260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score573.5
Seed ortholog evalue9.6e-161
Seed eggNOG ortholog2880.D8LR19
Preferred nameSTX5
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
EggNOG free text desc.vesicle docking
EggNOG OGsKOG0812@1,KOG0812@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons7
Model size2216
Cds size1545
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.1238306-UTR-L-elsbetiae_contig968:8565..92131622817032.1238306-UTR-L-elsbetiae_contig968:8565..9213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 8566..9213 -
1691683996.0735536-UTR-L-elsbetiae_contig968:8565..92131691683996.0735536-UTR-L-elsbetiae_contig968:8565..9213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 8566..9213 -
1622817032.216523-UTR-L-elsbetiae_contig968:13237..132601622817032.216523-UTR-L-elsbetiae_contig968:13237..13260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 13238..13260 -
1691683996.1626089-UTR-L-elsbetiae_contig968:13237..132601691683996.1626089-UTR-L-elsbetiae_contig968:13237..13260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig968 13238..13260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817032.1380908-CDS-L-elsbetiae_contig968:9213..93101622817032.1380908-CDS-L-elsbetiae_contig968:9213..9310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 9214..9310 -
1691683996.087915-CDS-L-elsbetiae_contig968:9213..93101691683996.087915-CDS-L-elsbetiae_contig968:9213..9310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 9214..9310 -
1622817032.149053-CDS-L-elsbetiae_contig968:9667..98131622817032.149053-CDS-L-elsbetiae_contig968:9667..9813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 9668..9813 -
1691683996.0985887-CDS-L-elsbetiae_contig968:9667..98131691683996.0985887-CDS-L-elsbetiae_contig968:9667..9813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 9668..9813 -
1622817032.1594088-CDS-L-elsbetiae_contig968:10141..102421622817032.1594088-CDS-L-elsbetiae_contig968:10141..10242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 10142..10242 -
1691683996.1096141-CDS-L-elsbetiae_contig968:10141..102421691683996.1096141-CDS-L-elsbetiae_contig968:10141..10242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 10142..10242 -
1622817032.170382-CDS-L-elsbetiae_contig968:10635..113711622817032.170382-CDS-L-elsbetiae_contig968:10635..11371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 10636..11371 -
1691683996.1213925-CDS-L-elsbetiae_contig968:10635..113711691683996.1213925-CDS-L-elsbetiae_contig968:10635..11371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 10636..11371 -
1622817032.181009-CDS-L-elsbetiae_contig968:11803..119451622817032.181009-CDS-L-elsbetiae_contig968:11803..11945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 11804..11945 -
1691683996.1325307-CDS-L-elsbetiae_contig968:11803..119451691683996.1325307-CDS-L-elsbetiae_contig968:11803..11945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 11804..11945 -
1622817032.1915472-CDS-L-elsbetiae_contig968:12138..122691622817032.1915472-CDS-L-elsbetiae_contig968:12138..12269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 12139..12269 -
1691683996.1423106-CDS-L-elsbetiae_contig968:12138..122691691683996.1423106-CDS-L-elsbetiae_contig968:12138..12269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 12139..12269 -
1622817032.2061808-CDS-L-elsbetiae_contig968:13045..132371622817032.2061808-CDS-L-elsbetiae_contig968:13045..13237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 13046..13237 -
1691683996.1525404-CDS-L-elsbetiae_contig968:13045..132371691683996.1525404-CDS-L-elsbetiae_contig968:13045..13237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig968 13046..13237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig968.18652.1prot_L-elsbetiae_contig968.18652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig968 9214..13237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig968.18652.1

>prot_L-elsbetiae_contig968.18652.1 ID=prot_L-elsbetiae_contig968.18652.1|Name=mRNA_L-elsbetiae_contig968.18652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=515bp
MTMTDRTEEFRGAVNVFRPTVVVVKNSSEAAASRAQSDLGYQKTSEFLQL
ASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEISEVMKLFEEDMAGLQ
RDISSLQRHADGKTRGSPPANSQRQMHCAFIVTTLRKSAQEHTKAFRDAL
LLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGAAIGAGGPRRRPM
RGRPAAPHPPPHSAAATVPLGDDDEDNKGHKKRVDGGRAAGLGLAASTAA
AVVSSLPFPSGKPGGGVGKSGGGVTGGGGQGGSPSSWPQKPGPPPWPAEG
HNGTGYNGGAGGGGGVGGGASGYSSGAAVAPPVGGGVFGVGGVGLGHGAG
ATSTPARSNGSGIGAHGRGLGYGAAPPGVPVHPPEPPRAGGGATGLRKRP
GREDGGDGEEEARRAAWQLQVQEDSKTRVDESHKVEKMIGDLGQMFSRFS
TMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFI
MLILFIWVFLGLMR*
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mRNA from alignment at L-elsbetiae_contig968:8566..13260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig968.18652.1 ID=mRNA_L-elsbetiae_contig968.18652.1|Name=mRNA_L-elsbetiae_contig968.18652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4695bp|location=Sequence derived from alignment at L-elsbetiae_contig968:8566..13260- (Laminarionema elsbetiae ELsaHSoW15)
CCGCTCTGTACGAGTGCTGTACGATGACGATGACTGACCGGACGGAAGAG
TTCCGCGGGGCGGTCAACGTCTTCCGACCCACGGTGGTGGTAGTCAAGAA
CAGCAGCGAAGCGGCAGCGAGCAGGGCTCAGTCTGATCTGGGGTATCAGA
AGACGTCGGAGTTTCTCCAGCTTGCCTCCAGCGTAGCTGTCGGCTTCGAG
GGCACCTCCAAGCTGGTATGTGGCGCGTGGCCGATTGAATGATGGAAATC
AGGGTGTGGTGTCGATAGGCAGGGCGTTTTGAGATATTAATCGTGGCGTG
GTTGTGGATGAGGAGGACAGGCAACAACGTACAAGTTTGCGTCGGTCTCT
AAAGACAGGAACGAGCGGGTGTAGCTATGTACTGCCGGCAACTGCTACTG
CTGCATACATACATGGGTAGTGTCAGAACAAAGGCCAAGGACTGAGTTTC
TACATGCTTCGCTTTGCACAGCGCCACATCATCACTGCTGTAAGTGCTGC
TCTTGATACATTATAAGACGTGCACTACATACAGTACATCACAGAATTGT
TTCGCGAACGTCACGAAGGCCGAGCACATGCTGAAACACGATTATCGTGC
GTACTGTACCGGTTTCGCAGGCCCGCATTCCCTCCGTGTATTCACTTGGT
GTGAACCGTATGTATAATTCGATGCAATGAGAGCAGGAGCGAAGCGAAGC
GTCTCATTATAAGCGGTCTCGTGTTTTGTCCTCTCGAAGCACCTGCATAC
ATCTGCTGTAGATACGGATTAGAGGAGCAGCCGCCGCCGGAGGCACATAG
TAGGTAGGTACACGACAGCACTTCAGCGAAACGCCAAAGTGGTCTCTCGG
CACCGGCATGCTTCTGTTATCGATGATACTGCTGTGGACTGTGGACCCGC
ACGTTGTTTTTGCCTGCGGTGAGACCCTACATAGCCCCCAAAAAGTCAAC
TGCGTTGTATTGTTGTGTGTCTTCCACACATGTTTTGTCAGATTGGACGG
CTCAAGAAGCTCGTTGGGCGGAAGGGTTTCAGCAACAACCCCGCCGCTGA
GATTAGCGAGGTCATGAAGCTCTTCGAGGAGGACATGGCCGGCTTACAGA
GGGATATATCATCGCTGCAGAGGTACGCGCGTGGTGTGCAAAAATCCATA
AGGCAACCGGAAATCGGCAACCGCTCTCAGTTGTGCGGTTATGGACAGCG
GTTGCCGATTGAAAAGGAAGGACGCAACCGCCATCAATTCGACGGCGTGT
AACATGTAAAAATTTTCCAGCAAACAAAACCCGTTTCTTGTTCCAAAAAT
AAACCTAAAAAACAGGCATGCGGACGGCAAGACGAGGGGAAGCCCGCCGG
CCAACAGCCAGCGGCAGATGCACTGCGCGTTCATCGTAACGACACTAAGG
AAAAGCGCGCAGGAGCACACGAAGGCCTTCCGAGACGCGCTCTTGCTACG
CGCAGCGGTGAGTACCGGGAGGTAGCAGCAGCAACAGCAGCGGCGGCGGC
GGCAGTACACAGCAGCGCATTTTGTTGCCTATCGTCCTTGCTGGTACATG
TTGTCCGAGTTCTTGGGAAACGGGGGGTAAATGCCCTTGATATCACGGGT
GGGCTGTACGTGGTGCATGCCTCGGAAGGGGGACGAGGCAAAACCAACTT
TGAAACGTATCCTGTGCTCGTTAGGTTTTCGCCGACGTCACAGGGCATAT
GTAGCGTGAACCGAGTCCTTTCCGTATCATACAATAGTCTCCACGGGCTA
CTGCTGCATGCCGCAGTGCACATCTCTAGCGTCCGCCGACTGCTGCATTG
CAGAGCGTCAAACAACTCACCAGCGCCGCGCCCTCAAACAGTCTCAACGC
GGCCATTTATGAATAAAACGGAAACACCTGACAACCTAGGTGGAGAAGCA
GCAAAACGAGCGGCAGCGCAAGTTCTCTCACTCCCGCGGCGTGGCTCCGG
CGACCCAGCTGGATTACCCCCTCTTCGGGAACGGTGCCGCCATCGGCGCC
GGGGGACCGCGACGCCGCCCCATGCGGGGCCGCCCGGCCGCCCCTCATCC
CCCCCCGCACTCCGCCGCCGCCACGGTACCTCTGGGAGACGATGATGAAG
ACAACAAAGGACACAAAAAGAGGGTGGACGGTGGAAGAGCGGCGGGGTTG
GGGTTGGCTGCGTCGACCGCTGCCGCCGTGGTTTCGTCGTTACCGTTCCC
GTCCGGAAAGCCGGGAGGAGGGGTGGGGAAGAGCGGCGGGGGTGTGACAG
GCGGCGGCGGCCAGGGTGGCTCTCCCTCTTCCTGGCCTCAGAAACCCGGA
CCGCCCCCATGGCCGGCAGAGGGGCACAACGGCACCGGCTACAACGGCGG
TGCCGGCGGTGGTGGTGGTGTTGGTGGTGGTGCTTCCGGCTACAGCAGTG
GTGCGGCTGTGGCGCCTCCCGTGGGTGGTGGTGTCTTCGGAGTAGGAGGG
GTAGGGTTAGGGCATGGTGCTGGGGCGACTTCAACGCCGGCGCGCAGCAA
TGGTAGCGGTATTGGTGCGCATGGAAGGGGGTTGGGGTATGGAGCAGCAC
CGCCAGGGGTTCCGGTACATCCACCGGAACCACCCAGGGCAGGTGGCGGG
GCCACTGGGCTGAGAAAGCGACCAGGTGAGAGAGAGATGATGTGAGACAA
TGATCACCTGGTAAGAGACGGTCAGTGGGCGGAAGATGGCGTGTGGAGCT
CAGGGGGTGGGGGAATGGAGCTCTCGTGGACAGGATTGCCGTCGTCTCGA
TTTATGGTGCCACTCTTTTTATTGCGCTCGGGTCGCTTCTTGCATTCTCC
TTTCCTGGCCTCTCTCTCCTGATGTCCTACAGTACCTTCCTTCTCGCTCC
AAAGTATACCGCTGTTTTTTTTTTCGAAGCCGCTCTCTTTGCTTCCCTTT
TTTTTTACCCTCTGACCTTCCTTCTATTTGTACCACCGTGGGTGGCCTTT
TTTTGTCGTGACTTTTTTCTCTCGTGTTACACCCCCCGCTCTTGGCATGG
CGTGCTTTTATACTCCAGGACGAGAAGACGGGGGCGACGGGGAGGAAGAA
GCTCGGCGAGCTGCCTGGCAGCTGCAGGTCCAAGAGGACTCCAAGACCAG
GGTGGACGAGTCGCACAAGGTGAGAGCGTCAAAACCAAGCGTACAAAGCA
ATGCCCTGTGGAACCGAAGCGAAGCAACCCCCTCCGGCCATGCAAATGGG
TTCAAGCTTGCTGTCACGACCAAAAAAAAGGGAAGAAACATACACGTGGA
TGAACCTACATAGTACAGGATGGCAAAACGGACCACCTACAGCAGTAGCG
TTTTTAACGATTGCTGCACTTTCTGCTGCAATGAAAACCTCGAGCCAGCG
GAAGTCACGAAGGAAGATGAAAAAAACGCCCGAACCGAAAAAGTTACCGT
GGAAGAACAACACATTAACACTCGCCTCTACGACCAAAACACGGCAGGTG
GAGAAGATGATCGGCGATCTGGGGCAGATGTTCAGCCGGTTCTCGACGAT
GGTGGCGGCGCAGGAGGAGGTGGTGATGCACATCGAGGACGACGTCGAGG
CCGCGCACGCCTTCGCCGAGGAAGGACAGGCGCACCTCGCCAAGTAAGTT
GACCCGACCCGACCCGACCCGACCCGAGTCAAGTCTAGTCTGTTCTAGTC
TAGCTGAGTCCGGTCGAGTCCAGTCGAGCCGTTTCACACACACGCGTTAT
CGCACATGTGCCCGTGTAGGTGGAACCACAGATGATCTGAGTGACGTATG
TTTGGAGCAAGGCCTAGTGGTACTCTTCTGGCAGTGGGGCTTGGGGCGAG
TCGCGATAGAGTGTTGGGGCCCTTTTTCTTGGGCCCGGTGGGTGTTCTTG
GTGCGAAGCGAAGTTTCTGATAGTTCCCTGCGTAGACACCTAGAAGTTTT
TATAGTCCCCTCCTTTTCTTATTCGTCCTTTTCGCTATGTTTTTTGTCAG
GTACTACCAGATAATGAGCGGCAATCGTGGCATCATCATCAAGGTGTTCA
TCATGCTCATCCTCTTCATCTGGGTTTTCCTTGGCCTCATGAGATGACAT
GACGTGACGTGACGTTACGCGACGTGACGTGACGTGACTTGACGTGAAAC
GAGATAGCATGCCATGACATGACACCACCCCTACGATCCGGGTAGCTTGG
CCGATGCATACATCGTGCCTTGCGCATCTGCTGGATGGAACACCAAACAA
CCGTAGATGCTGCTTTGTAGCGCAGTCTAAACGATGACGAACGATGACGT
ACTCATACGTAGTATTCCACACCACACTGTTACAGTTAGAGGGCAGGCTT
GACATTTGTTTATCGGGAGATGTGCCTCCTCTCCCGCACACCCAGCTGCG
TGGATTTGTGCAACCGAGGTTGTGTCTAAATCCTGCCTAGTTTTGGCGTA
CCATTCCCCTGTGAGCAACACGGTCCACCACTCTTGGTGGACAAGGGCAG
AGAAGGAGAGAGACGGCCACCACGGATACAGCGATACTGCTAGTTAGCTC
CGCGAGCGGCGGGCGTGTAGGTAGTACACATCTGTTTCGAGTTGAGACGA
AAGGTGATGTATCATTCGCTCGCCTTAAACGCGCGCGGTCGGCTGTGTTT
TTCTGCTGCATTGAAGACTAGAGAAAGAAACGCCGGCTTCGTTGAGTTTC
GCACAAGCTAAGTGTGGGTCGTTTCGGCCATGGACATCTGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig968:8566..13260-

>mRNA_L-elsbetiae_contig968.18652.1 ID=mRNA_L-elsbetiae_contig968.18652.1|Name=mRNA_L-elsbetiae_contig968.18652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3090bp|location=Sequence derived from alignment at L-elsbetiae_contig968:8566..13260- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATGACTGACCGGACGGAAGAGTTCCGCGGGGCGGTCAACGTCTT
CCGACCCACGGTGGTGGTAGTCAAGAACAGCAGCGAAGCGGCAGCGAGCA
GGGCTCAGTCTGATCTGGGGTATCAGAAGACGTCGGAGTTTCTCCAGCTT
GCCTCCAGCGTAGCTGTCGGCTTCGAGGGCACCTCCAAGCTGATGACGAT
GACTGACCGGACGGAAGAGTTCCGCGGGGCGGTCAACGTCTTCCGACCCA
CGGTGGTGGTAGTCAAGAACAGCAGCGAAGCGGCAGCGAGCAGGGCTCAG
TCTGATCTGGGGTATCAGAAGACGTCGGAGTTTCTCCAGCTTGCCTCCAG
CGTAGCTGTCGGCTTCGAGGGCACCTCCAAGCTGATTGGACGGCTCAAGA
AGCTCGTTGGGCGGAAGGGTTTCAGCAACAACCCCGCCGCTGAGATTAGC
GAGGTCATGAAGCTCTTCGAGGAGGACATGGCCGGCTTACAGAGGGATAT
ATCATCGCTGCAGAGATTGGACGGCTCAAGAAGCTCGTTGGGCGGAAGGG
TTTCAGCAACAACCCCGCCGCTGAGATTAGCGAGGTCATGAAGCTCTTCG
AGGAGGACATGGCCGGCTTACAGAGGGATATATCATCGCTGCAGAGGCAT
GCGGACGGCAAGACGAGGGGAAGCCCGCCGGCCAACAGCCAGCGGCAGAT
GCACTGCGCGTTCATCGTAACGACACTAAGGAAAAGCGCGCAGGAGCACA
CGAAGGCCTTCCGAGACGCGCTCTTGCTACGCGCAGCGGCATGCGGACGG
CAAGACGAGGGGAAGCCCGCCGGCCAACAGCCAGCGGCAGATGCACTGCG
CGTTCATCGTAACGACACTAAGGAAAAGCGCGCAGGAGCACACGAAGGCC
TTCCGAGACGCGCTCTTGCTACGCGCAGCGGTGGAGAAGCAGCAAAACGA
GCGGCAGCGCAAGTTCTCTCACTCCCGCGGCGTGGCTCCGGCGACCCAGC
TGGATTACCCCCTCTTCGGGAACGGTGCCGCCATCGGCGCCGGGGGACCG
CGACGCCGCCCCATGCGGGGCCGCCCGGCCGCCCCTCATCCCCCCCCGCA
CTCCGCCGCCGCCACGGTACCTCTGGGAGACGATGATGAAGACAACAAAG
GACACAAAAAGAGGGTGGACGGTGGAAGAGCGGCGGGGTTGGGGTTGGCT
GCGTCGACCGCTGCCGCCGTGGTTTCGTCGTTACCGTTCCCGTCCGGAAA
GCCGGGAGGAGGGGTGGGGAAGAGCGGCGGGGGTGTGACAGGCGGCGGCG
GCCAGGGTGGCTCTCCCTCTTCCTGGCCTCAGAAACCCGGACCGCCCCCA
TGGCCGGCAGAGGGGCACAACGGCACCGGCTACAACGGCGGTGCCGGCGG
TGGTGGTGGTGTTGGTGGTGGTGCTTCCGGCTACAGCAGTGGTGCGGCTG
TGGCGCCTCCCGTGGGTGGTGGTGTCTTCGGAGTAGGAGGGGTAGGGTTA
GGGCATGGTGCTGGGGCGACTTCAACGCCGGCGCGCAGCAATGGTAGCGG
TATTGGTGCGCATGGAAGGGGGTTGGGGTATGGAGCAGCACCGCCAGGGG
TTCCGGTACATCCACCGGAACCACCCAGGGCAGGTGGCGGGGCCACTGGG
CTGAGAAAGCGACCAGGTGGAGAAGCAGCAAAACGAGCGGCAGCGCAAGT
TCTCTCACTCCCGCGGCGTGGCTCCGGCGACCCAGCTGGATTACCCCCTC
TTCGGGAACGGTGCCGCCATCGGCGCCGGGGGACCGCGACGCCGCCCCAT
GCGGGGCCGCCCGGCCGCCCCTCATCCCCCCCCGCACTCCGCCGCCGCCA
CGGTACCTCTGGGAGACGATGATGAAGACAACAAAGGACACAAAAAGAGG
GTGGACGGTGGAAGAGCGGCGGGGTTGGGGTTGGCTGCGTCGACCGCTGC
CGCCGTGGTTTCGTCGTTACCGTTCCCGTCCGGAAAGCCGGGAGGAGGGG
TGGGGAAGAGCGGCGGGGGTGTGACAGGCGGCGGCGGCCAGGGTGGCTCT
CCCTCTTCCTGGCCTCAGAAACCCGGACCGCCCCCATGGCCGGCAGAGGG
GCACAACGGCACCGGCTACAACGGCGGTGCCGGCGGTGGTGGTGGTGTTG
GTGGTGGTGCTTCCGGCTACAGCAGTGGTGCGGCTGTGGCGCCTCCCGTG
GGTGGTGGTGTCTTCGGAGTAGGAGGGGTAGGGTTAGGGCATGGTGCTGG
GGCGACTTCAACGCCGGCGCGCAGCAATGGTAGCGGTATTGGTGCGCATG
GAAGGGGGTTGGGGTATGGAGCAGCACCGCCAGGGGTTCCGGTACATCCA
CCGGAACCACCCAGGGCAGGTGGCGGGGCCACTGGGCTGAGAAAGCGACC
AGGACGAGAAGACGGGGGCGACGGGGAGGAAGAAGCTCGGCGAGCTGCCT
GGCAGCTGCAGGTCCAAGAGGACTCCAAGACCAGGGTGGACGAGTCGCAC
AAGGACGAGAAGACGGGGGCGACGGGGAGGAAGAAGCTCGGCGAGCTGCC
TGGCAGCTGCAGGTCCAAGAGGACTCCAAGACCAGGGTGGACGAGTCGCA
CAAGGTGGAGAAGATGATCGGCGATCTGGGGCAGATGTTCAGCCGGTTCT
CGACGATGGTGGCGGCGCAGGAGGAGGTGGTGATGCACATCGAGGACGAC
GTCGAGGCCGCGCACGCCTTCGCCGAGGAAGGACAGGCGCACCTCGCCAA
GTGGAGAAGATGATCGGCGATCTGGGGCAGATGTTCAGCCGGTTCTCGAC
GATGGTGGCGGCGCAGGAGGAGGTGGTGATGCACATCGAGGACGACGTCG
AGGCCGCGCACGCCTTCGCCGAGGAAGGACAGGCGCACCTCGCCAAGTAC
TACCAGATAATGAGCGGCAATCGTGGCATCATCATCAAGGTGTTCATCAT
GCTCATCCTCTTCATCTGGGTTTTCCTTGGCCTCATGAGATGAGTACTAC
CAGATAATGAGCGGCAATCGTGGCATCATCATCAAGGTGTTCATCATGCT
CATCCTCTTCATCTGGGTTTTCCTTGGCCTCATGAGATGA
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