mRNA_L-elsbetiae_contig9676.18649.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9676.18649.1
Unique NamemRNA_L-elsbetiae_contig9676.18649.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9676.18649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9676contigL-elsbetiae_contig9676:3733..7492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1530
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9676.18649.1prot_L-elsbetiae_contig9676.18649.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9676 3887..6518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.9527414-UTR-L-elsbetiae_contig9676:3732..38861622817031.9527414-UTR-L-elsbetiae_contig9676:3732..3886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9676 3733..3886 +
1691683995.9694805-UTR-L-elsbetiae_contig9676:3732..38861691683995.9694805-UTR-L-elsbetiae_contig9676:3732..3886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9676 3733..3886 +
1622817032.0007505-UTR-L-elsbetiae_contig9676:6518..74921622817032.0007505-UTR-L-elsbetiae_contig9676:6518..7492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9676 6519..7492 +
1691683996.0106876-UTR-L-elsbetiae_contig9676:6518..74921691683996.0106876-UTR-L-elsbetiae_contig9676:6518..7492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9676 6519..7492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.965862-CDS-L-elsbetiae_contig9676:3886..40271622817031.965862-CDS-L-elsbetiae_contig9676:3886..4027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 3887..4027 +
1691683995.9816341-CDS-L-elsbetiae_contig9676:3886..40271691683995.9816341-CDS-L-elsbetiae_contig9676:3886..4027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 3887..4027 +
1622817031.9788733-CDS-L-elsbetiae_contig9676:5148..53291622817031.9788733-CDS-L-elsbetiae_contig9676:5148..5329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 5149..5329 +
1691683995.9920201-CDS-L-elsbetiae_contig9676:5148..53291691683995.9920201-CDS-L-elsbetiae_contig9676:5148..5329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 5149..5329 +
1622817031.9905882-CDS-L-elsbetiae_contig9676:6438..65181622817031.9905882-CDS-L-elsbetiae_contig9676:6438..6518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 6439..6518 +
1691683996.0016606-CDS-L-elsbetiae_contig9676:6438..65181691683996.0016606-CDS-L-elsbetiae_contig9676:6438..6518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9676 6439..6518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9676.18649.1

>prot_L-elsbetiae_contig9676.18649.1 ID=prot_L-elsbetiae_contig9676.18649.1|Name=mRNA_L-elsbetiae_contig9676.18649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MRSASPPYALSSPCPSLEFLRKALKDDGRAGEVQPFFEVEDVRASAESAG
GTQAPSLECFEVVAEARPLSHRGVASGEPDPSSTEAGIEAGLGEDDRADP
GLSQGTEAGVTEEGQAGEDEAGEASSPKAHELA*
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mRNA from alignment at L-elsbetiae_contig9676:3733..7492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9676.18649.1 ID=mRNA_L-elsbetiae_contig9676.18649.1|Name=mRNA_L-elsbetiae_contig9676.18649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3760bp|location=Sequence derived from alignment at L-elsbetiae_contig9676:3733..7492+ (Laminarionema elsbetiae ELsaHSoW15)
CATTTCGTCCCCCCAACCCCCCTCCTCGACCCTTTCCTGCCTGCTGTACC
CCTCCTCGATCCTTTCCTGCCTGCTGTACCCCTCCTCGACCCTTTCCTGC
CTGCTGTACCCCTCCTCGATCCTTTCCTGCCTGCTGCACCGGTATGTGAA
GGGGATGCGGTCCGCAAGCCCGCCTTACGCGCTTAGTTCGCCATGTCCGA
GCCTCGAATTCCTGCGGAAAGCCCTCAAAGATGACGGCCGTGCCGGGGAA
GTCCAGCCGTTCTTCGAAGTCGAAGACGTACGTGCGTCAGCAGAGGTGCG
TCTTATTGCAAACAGCGGAACGCTTAACGGCAGTTAGGGTAGATAGTGAC
AGGGCTACCTCCTCCGCGTTCAGAAAACATGCACGGCGCCCCCCCTGCAG
GAACGCTTCTTCACGTGCAACAGGCAGCTGTAAATGATGAAGGGTTGAGA
CCATCCGTCCGTGAGTGGGTGGGTGTTATTTTTCGCGCATCCCGGATATT
ACCATCGGAATCACTCTTGCGCGCAGCTTTCATTGGTAACTACCTCTACG
TTCCTTTTGGAGTGTAAGTTTCGAGGACTTGCGTTTTGTTCTGTTTGAGC
CTCGTGGACCTGGCCCTGGTTAGGAGGCCCCGTGGATGAGGGGCAGGATG
ACGGTGAGATACATGCTGTACCCCAAGGGTAGGCCTCTCGTTGGTTGTTT
CGGTCTGCTGACGGAACATGCTGACCCTTCCGGCAGAGTTAGCCCAGAGC
TGCGAGCATGCCTGCTGGAGGTATGCATGCTGCATGAGGGACTGAACACT
CCTCTCCTCTTCCTTGACTCTTTATTGCATGAGGGAAATGGGAACCGTTC
CGTTTTCCTCATCTCCGCTTTTTTATAATACATCAGTATTTTCGAGTCAG
TTCTTCTCAGATAGTATGGGATGAAAACAGTGGCATCACCTCCCGCGGCT
GGTGTGTCCACTCCTCCACATAGCCTCTTGAGATTTATTTTCGACACCAC
CGCTTCTTGGAAAGAAAAAACAGACAGTTAAATCAAAAATGGAACCTAAC
CCACATTGGAGACGGGACTCCCATGGGATTCCATCGGTATTTCATATAGT
GACGTAATATTGGCCCAGCCCACCCAGTAGAAAAACAAATAAAATGTTGA
AATTCTTTGTTTACCTGAGTGTGGTGCGACGGCAGCACGTCTCGAAAACG
TGAACAGCGTCGGCAAGACCAATGGCTGTGTCAGGAGCACACTTGAATAC
CTCTGCATACATCGGTTGTGCGTTTGTTTTTGTGTCGCGCTTGCCGGGGC
AGCAACATATATACTTCTACACACCATGACAAGCTTCATATTTACGGCAA
GCAATAAATCATATGTTTCCTAAGAAAGGTTCTACCATGCCGTGCTTGCT
GCGGTTCTTCGTGCAGAGTGCTGGGGGCACTCAAGCACCAAGCCTCGAGT
GCTTCGAGGTTGTAGCGGAGGCGCGTCCACTTTCCCACCGAGGTGTGGCG
AGTGGGGAACCTGACCCATCCTCAACAGAGGCTGGGATCGAGGCTGGCCT
CGGAGAGGACGATAGAGCAGACCCAGGGCTATCGCAAGGAACCGAAGGTG
CGAGTGATCCAATGCGATGGTCTGGTCCTGCCTGCACACGTGCATATTTA
TTTATTAAAAATAAACAAAGAATCAGAGATGGAACCTAACCCGCACTATA
GAGCAAAGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAA
TATTTGGCGAAGCGGGAAGAAAAACAACCTAAATATCAGAAGAGTTCAAC
GTCTCCCCTGCAAAGATTTGAGATTTGCGAGGTCGGCCAACAATTATTTA
TGTCCCAAGTCTGGATGAGCAAACTTGGTTTCTTTCCAGCGGTCGTCCGC
TGTTGTGTGCACCCTGCCGGCCGCATGGGGCACGTGCACTTTTACGAACG
TCCAAAGTATATGTGTACGCCGAATGAAAGTGGCCATGTGTTCGGGGGAG
ATTCGTTGTTGTTTGGGAGCCCAAATGCCGCGAGCCGAGCAAAAATAAGC
AGACACGGGGCCCCCGTCGATTTTTTGTTTTTTTCCGGATATATTGAAAT
GCACGAACGCGGAGGCGTTAACTCTTCTTCACGCCTAAATATGAGAAAAG
CAAATACTTCTCCATGCGGGTGGGTGAAAAGAGGCGAATGCTTCTGTAAG
CATACGCGGCACAGCACAGCAGGTGCAGCACTGTCTGTTTTCGAAGCGCC
CAGCTCAGGTTCCGATACGTATGTAGCTGTGCCGTTGCGGGCGTCCTCTC
TCAACTGATGAGTTTTTTTTATTTTTTCACCCCGGTTATTTCGTGGCACA
TATATTCATGTTTTGAGTGGTTTCTTGCCGTCCGTTGGTGTGCAGTTCCG
TGTTTTGTTTTGTGCAAATGAAATTATTTCATCATATTGCGCAACTGTTG
GGATGCATATATACATACATCCCGTCCGCCGTCCGTGGAAGTTCCCGGGC
GCCCGACAGCGCTTCGCGCTCGCTGTTTTGTGTTTGCCTGCCTTCGTCGA
TAACCGCCGACGCCCTGCAACGCGTGAGCCGTGCGTTGCACTGCCAAGGT
TCATGGCAGTGTGTACCATGTGGGGCCGTTTCATTATTGAACATAGCGCA
ACCCGACCCGTTATGTATCACCACCGCCCCGGGTTTCATCCGTTCTCGCA
AAGCAGCCGGCGTAACAGAAGAAGGCCAAGCAGGCGAGGACGAAGCTGGC
GAGGCCTCATCTCCCAAGGCCCATGAGTTAGCCTGAAGCGGGGCGACAAA
TCCTGCACGCCGACCGGGGAAATGTCCTTCCCGGGCCACAGCCTGAATCT
CCATCCTGTGTCTTTTGTTGATAGGGTGGTCTACACGGGATACTTTGCGG
AACCGCTCCCGCCCGCTCGTTGTTTTCTTTTCTTTTCGAAAAGTGCCCAC
GACAGACAGTAGTGTTGTGCGGATTACTGCTGTACCGACTCTTAAATCGG
GGGCTGGGGTGGGGCGTCTTGGTTTATGTATGATGAGGTTACATGAGGCG
GCATTAGCACACACTTGCGAGGCTTGTTTTTTTGCGATGCCACAGCCTAA
AAGAGCGATGCGTTGGTCAATGTCCTGGTCCTGGAACATGTCGTTTCTTG
GTTAAGTGTGTAACCCGGTTGAGAGTTGAGCCGACGGACTGTTGTGGGTA
TGGCACCTTCCCGTTGTTCGCTAGCGCTTTGCTTCTCTCTGGAGCTCACG
GAGTGGTACGTGTGTGTGACGAATGACCCCCAGATGTAATTACGCCTGGT
TATAATAGTGCTGGGGGGTTGGCTTGTCTTTATTTGCGTGCGGGCCGAAG
TGACGGCGTGTTTTGGCCTGAGTCTTACATGATCGCGAGTTGGGAGCGAG
TCTTTGAAACTTTGGCGCAGCGTCCACTCCTCGTGGGAAGAAGCTTGAAC
GATCGATTTTTTTAATTCCGTACCTCCAGGACGACGCGGCGAGCGGGCTC
TGTTGAAAAAAAACGTCCGATCCGACTCAAGCGTGTGTCGGAGAAGCAGA
GAGAGAAGGTTGTGGGCGGCGGTGAAGACTCCGCCCTCTCTCACCTTGCT
ACAGGCGAGTGAAACGTTGCACGGCACACACAAGCCCGCGGGGCACCTGG
GTGGGTGGCGGGGGGCAAATGAATGTACTACTGTACAGTTGCGGCCCAGA
GATAAGAAACGTCAATTTCGGGTCGAGGCTCACTCTCTTAGTTCGGGAGC
AAACACCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9676:3733..7492+

>mRNA_L-elsbetiae_contig9676.18649.1 ID=mRNA_L-elsbetiae_contig9676.18649.1|Name=mRNA_L-elsbetiae_contig9676.18649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig9676:3733..7492+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTCCGCAAGCCCGCCTTACGCGCTTAGTTCGCCATGTCCGAGCCT
CGAATTCCTGCGGAAAGCCCTCAAAGATGACGGCCGTGCCGGGGAAGTCC
AGCCGTTCTTCGAAGTCGAAGACGTACGTGCGTCAGCAGAGATGCGGTCC
GCAAGCCCGCCTTACGCGCTTAGTTCGCCATGTCCGAGCCTCGAATTCCT
GCGGAAAGCCCTCAAAGATGACGGCCGTGCCGGGGAAGTCCAGCCGTTCT
TCGAAGTCGAAGACGTACGTGCGTCAGCAGAGAGTGCTGGGGGCACTCAA
GCACCAAGCCTCGAGTGCTTCGAGGTTGTAGCGGAGGCGCGTCCACTTTC
CCACCGAGGTGTGGCGAGTGGGGAACCTGACCCATCCTCAACAGAGGCTG
GGATCGAGGCTGGCCTCGGAGAGGACGATAGAGCAGACCCAGGGCTATCG
CAAGGAACCGAAGAGTGCTGGGGGCACTCAAGCACCAAGCCTCGAGTGCT
TCGAGGTTGTAGCGGAGGCGCGTCCACTTTCCCACCGAGGTGTGGCGAGT
GGGGAACCTGACCCATCCTCAACAGAGGCTGGGATCGAGGCTGGCCTCGG
AGAGGACGATAGAGCAGACCCAGGGCTATCGCAAGGAACCGAAGCCGGCG
TAACAGAAGAAGGCCAAGCAGGCGAGGACGAAGCTGGCGAGGCCTCATCT
CCCAAGGCCCATGAGTTAGCCTGACCGGCGTAACAGAAGAAGGCCAAGCA
GGCGAGGACGAAGCTGGCGAGGCCTCATCTCCCAAGGCCCATGAGTTAGC
CTGA
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