mRNA_L-elsbetiae_contig9672.18648.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig9672.18648.1
Unique Name	mRNA_L-elsbetiae_contig9672.18648.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.810e-19
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1

Query:    1 SGVSRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SG+ RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 79.7 bits (195), Expect = 2.070e-18
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 1

Query:    1 SGVSRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGVS HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 2.970e-18
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1

Query:    1 SGVSRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SGV  HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 6.740e-16
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1

Query:    1 SGVSRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.830e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 5.320e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 5.320e-12
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1E1Y9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1Y9_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 2.630e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150

[Close]

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Match: R1C158_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C158_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.180e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3

Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig9672.18648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1E7F0G0_9STRA	3.810e-19	71.70	Uncharacterized protein (Fragment) n=2 Tax=Fragila...	[more]
B8CEF4_THAPS	2.070e-18	76.47	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A524MI88_9PROT	2.970e-18	71.70	Uncharacterized protein n=1 Tax=Nitrosomonadales b...	[more]
K0S3C5_THAOC	6.740e-16	68.63	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
R1EX34_EMIHU	3.830e-12	70.21	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]
R1ESX1_EMIHU	3.910e-12	70.21	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]
R1D6I6_EMIHU	5.320e-12	70.21	Uncharacterized protein n=2 Tax=Emiliania huxleyi ...	[more]
R1D5C4_EMIHU	5.320e-12	70.21	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]
R1E1Y9_EMIHU	2.630e-11	70.21	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]
R1C158_EMIHU	3.180e-11	70.21	Uncharacterized protein n=1 Tax=Emiliania huxleyi ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig9672	contig	L-elsbetiae_contig9672:3007..3168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.1
Seed ortholog evalue	3.5e-13
Seed eggNOG ortholog	35128.Thaps30335
Hectar predicted targeting category	no signal peptide or anchor
EggNOG OGs	2F8R5@1,2T9VT@2759,2XH3Y@2836
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	162
Cds size	162
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817031.913237-CDS-L-elsbetiae_contig9672:3006..3168	1622817031.913237-CDS-L-elsbetiae_contig9672:3006..3168	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig9672 3007..3168 +
1691683995.9568548-CDS-L-elsbetiae_contig9672:3006..3168	1691683995.9568548-CDS-L-elsbetiae_contig9672:3006..3168	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig9672 3007..3168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig9672.18648.1	prot_L-elsbetiae_contig9672.18648.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig9672 3007..3168 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig9672:3007..3168+
coding sequence from alignment at L-elsbetiae_contig9672:3007..3168+

protein sequence of mRNA_L-elsbetiae_contig9672.18648.1

>prot_L-elsbetiae_contig9672.18648.1 ID=prot_L-elsbetiae_contig9672.18648.1|Name=mRNA_L-elsbetiae_contig9672.18648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
SGVSRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQD
IRR*

mRNA from alignment at L-elsbetiae_contig9672:3007..3168+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig9672.18648.1 ID=mRNA_L-elsbetiae_contig9672.18648.1|Name=mRNA_L-elsbetiae_contig9672.18648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig9672:3007..3168+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGTGTTAGCAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA
AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGA

Coding sequence (CDS) from alignment at L-elsbetiae_contig9672:3007..3168+

>mRNA_L-elsbetiae_contig9672.18648.1 ID=mRNA_L-elsbetiae_contig9672.18648.1|Name=mRNA_L-elsbetiae_contig9672.18648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig9672:3007..3168+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGGTGTTAGCAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA
AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGAAGTGGTGTTAGCAGACACTCCGACAAGCATGCTCCCAG
GCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGA
TTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGT
GGGAGCCAAGACATCCGTCGCTGA