mRNA_L-elsbetiae_contig9670.18647.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9670.18647.1
Unique NamemRNA_L-elsbetiae_contig9670.18647.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.370e-40
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLAL 231
            MP  ITIDLIRR+AEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIG+M+NLHHMKELEYLNLAL
Sbjct:    1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLAL 77          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A835Z7F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.870e-34
Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIA 243
            M   I+++L+RR+AEHNEGLIHTLEE+SLHQEE+E I+D LG NCR LKILYLQNNII +M+NLHH+KELEYLNLALNNI 
Sbjct:    1 MAPVISLELVRRRAEHNEGLIHTLEEISLHQEEIERINDVLGKNCRHLKILYLQNNIINKMENLHHLKELEYLNLALNNIT 81          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A7S2CFI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFI3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.880e-31
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = 1
Query:   13 ITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNI 240
            +T  LIR++AEHNEG+I +LEE+SLHQEELE I + LG  CR+LKI+YLQNNII +M+NLHH+KELEYLNLALNNI
Sbjct:    4 LTRALIRKRAEHNEGIISSLEEISLHQEELEGIREVLGTTCRKLKIVYLQNNIIPKMENLHHLKELEYLNLALNNI 79          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A7S3HTQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.670e-30
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 1
Query:   13 ITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV 249
            IT DL+R++AEHNEG+I TLEE+SLHQEELESI++ LG  CR+LKILYLQNNII +M+NL HMK+L YLNLALNN+ K+
Sbjct:   28 ITRDLLRKRAEHNEGMISTLEEISLHQEELESINEVLGMTCRKLKILYLQNNIISKMENLFHMKDLVYLNLALNNVTKI 106          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A6A3PUF8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PUF8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.100e-29
Identity = 54/80 (67.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNI 240
            MPR IT++L+R++AEHNEG+I +LEE+SLHQEELE I+  +G  CR+L+ILYLQNNII +M++L HMKEL YLN+ALNNI
Sbjct:    1 MPR-ITVELLRKRAEHNEGIISSLEEISLHQEELEKIE-VIGTLCRKLRILYLQNNIIDKMEDLTHMKELRYLNVALNNI 78          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A7S4E455_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E455_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.320e-28
Identity = 52/79 (65.82%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   13 ITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV 249
            +T+ LIR++AEHNEG+I TLEEL+LHQEEL +I+  LG  CR+LKILYLQNNII ++++LHH+K+LEYLN+ALNN++K+
Sbjct:   27 MTLKLIRKRAEHNEGIISTLEELTLHQEELVAIEPCLGTTCRKLKILYLQNNIISKIQHLHHLKDLEYLNMALNNVSKI 105          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A6A5AU65_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AU65_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.350e-28
Identity = 51/83 (61.45%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV 249
            MPR IT++L+R+++EHNEG++ TLEE++LHQEE+E I+  +G  CR+L+ILYLQNNII ++++L HMK+L YLNLALNNI K+
Sbjct:    4 MPR-ITLELLRKRSEHNEGMVSTLEEIALHQEEIEKIE-VIGTLCRKLRILYLQNNIIEKIEDLTHMKDLRYLNLALNNIKKI 84          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: A0A662WUB0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUB0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.040e-27
Identity = 57/83 (68.67%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV 249
            MPR IT++L+R++AEHNEG+I TLEE+SLHQEELE I+  +G  CR+L+ILYLQNNII +M++L HMKEL YLNLALNNI+K+
Sbjct:    1 MPR-ITVELLRKRAEHNEGIISTLEEISLHQEELEKIE-VIGTLCRKLQILYLQNNIIEKMEDLTHMKELRYLNLALNNISKI 81          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: W7TJA0_9STRA (Leucine-rich repeat containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.170e-27
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 1
Query:   13 ITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV 249
            IT DL+R++AEHNEG++ TLEEL+LHQEELE I+D LG  CR +KILYLQNN++  ++NLHH+K LEYLN+ALNNI+ V
Sbjct:    4 ITRDLLRKRAEHNEGILTTLEELALHQEELEGINDILGKTCREIKILYLQNNLLPRIENLHHLKCLEYLNVALNNISVV 82          
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Match: F0YAK5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK5_AURAN)

HSP 1 Score: 107 bits (266), Expect = 4.690e-26
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   13 ITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGEMKNLHHMKELEYLNLA 228
            IT +LIR++AEHNEG+I TLEEL+LHQEEL +I   LG  CR+LKILYLQNNII +M+NLHHMK+LEYLNLA
Sbjct:    1 ITRELIRKRAEHNEGVISTLEELTLHQEELLAIAPCLGTICRKLKILYLQNNIISKMENLHHMKDLEYLNLA 72          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9670.18647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT33_ECTSI3.370e-4093.51Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z7F5_9STRA2.870e-3475.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CFI3_9STRA9.880e-3172.37Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3HTQ6_9STRA1.670e-3072.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A3PUF8_9STRA5.100e-2967.50Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A7S4E455_9STRA1.320e-2865.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6A5AU65_9STRA3.350e-2861.45Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A662WUB0_9STRA1.040e-2768.67Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W7TJA0_9STRA2.170e-2767.09Leucine-rich repeat containing protein n=2 Tax=Mon... [more]
F0YAK5_AURAN4.690e-2673.61Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9670contigL-elsbetiae_contig9670:6251..7300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue7.2e-34
Seed eggNOG ortholog2880.D7FT33
KEGG koko:K19753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.8744144-CDS-L-elsbetiae_contig9670:6250..63431622817031.8744144-CDS-L-elsbetiae_contig9670:6250..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 6251..6343 +
1691683995.9314299-CDS-L-elsbetiae_contig9670:6250..63431691683995.9314299-CDS-L-elsbetiae_contig9670:6250..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 6251..6343 +
1622817031.8848555-CDS-L-elsbetiae_contig9670:7144..73001622817031.8848555-CDS-L-elsbetiae_contig9670:7144..7300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 7145..7300 +
1691683995.9453793-CDS-L-elsbetiae_contig9670:7144..73001691683995.9453793-CDS-L-elsbetiae_contig9670:7144..7300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 7145..7300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9670.18647.1prot_L-elsbetiae_contig9670.18647.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9670 6251..7300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9670.18647.1

>prot_L-elsbetiae_contig9670.18647.1 ID=prot_L-elsbetiae_contig9670.18647.1|Name=mRNA_L-elsbetiae_contig9670.18647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MPRTITIDLIRRKAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKI
LYLQNNIIGEMKNLHHMKELEYLNLALNNIAKV
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mRNA from alignment at L-elsbetiae_contig9670:6251..7300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9670.18647.1 ID=mRNA_L-elsbetiae_contig9670.18647.1|Name=mRNA_L-elsbetiae_contig9670.18647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig9670:6251..7300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGGACGATCACGATCGACCTCATCCGTCGGAAGGCGGAGCACAA TGAAGGCCTCATCCACACCCTCGAAGAGCTATCCCTACACCAGGTAAGCG GTGCGTGGCACTGCAACGGGAAGCTGGCCTTAAGAAAGCTCAGGTAGCAG CAGGCAGACGCAGCAGACCGCGCCGAGATCCTTTAGGATCTGCACACCTC GAGAATCACACACGGTAGTACCCTTTGCATGTGTCTGACTGTAAGGTTGG CGCTATCCTGCCTGTGGTAGCCTTCGCCCAGCCAGCCAGAACGGTTCTCG TTCAATACCAGCAGGAAGAGAACAACCTGTACGATACATATATGTATCTA CGCGGACGTTTTGGCGGGTAACAAGTAACAAGTACCACCGATGATCGGAA CACAAGTTCAGTCAGACATGTAAGGGCGGCTAGTTGCTCTTGCAGTGGTC CCCTCCACGTCTTTTTGAAAGCAAAACAGGAAATCAAAAATGGAACCTAA CCCACATTGGAGACGAGACTCCCGTGAGATTCTAATATCGGTCCGCCACT ACTGTTGTAGCCCATGGTAGAAAAACACCAAGTATTACTAAGATGTTGAA AAAGTCCATCATCTCCCACTGCACAACTCTGCCAGGTCAAACAGCATGTA GACTAATATTTTGATTTACAAGATGCCACCGCCTTGATATAATGTTCGCA TATCCACACCTTTCGTTGTGCTTTGTGGTGGAGTCACGAACAACAAGACT TGCCCGATTGGGATAGTCCATCTCCTCTATCATTCTCTTGCGGTGGAAAT TCTTCAAGCCGAGGCGCGTGCGAATGTTTTTTTTTTTTTATTTGAAATGT CTGCATGCATCTAAGCTTCGCGCATGCCGCGACTGCAACTGCAGGAAGAG CTGGAGTCGATCGACGACACCCTCGGCTGCAACTGCCGCCGGCTCAAGAT CCTCTACCTCCAGAACAACATCATCGGGGAGATGAAAAACCTGCACCACA TGAAGGAGCTCGAGTACCTCAACCTCGCGCTCAACAACATCGCCAAGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9670:6251..7300+

>mRNA_L-elsbetiae_contig9670.18647.1 ID=mRNA_L-elsbetiae_contig9670.18647.1|Name=mRNA_L-elsbetiae_contig9670.18647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig9670:6251..7300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGGACGATCACGATCGACCTCATCCGTCGGAAGGCGGAGCACAA
TGAAGGCCTCATCCACACCCTCGAAGAGCTATCCCTACACCAGATGCCGA
GGACGATCACGATCGACCTCATCCGTCGGAAGGCGGAGCACAATGAAGGC
CTCATCCACACCCTCGAAGAGCTATCCCTACACCAGGAAGAGCTGGAGTC
GATCGACGACACCCTCGGCTGCAACTGCCGCCGGCTCAAGATCCTCTACC
TCCAGAACAACATCATCGGGGAGATGAAAAACCTGCACCACATGAAGGAG
CTCGAGTACCTCAACCTCGCGCTCAACAACATCGCCAAGGTTGAAGAGCT
GGAGTCGATCGACGACACCCTCGGCTGCAACTGCCGCCGGCTCAAGATCC
TCTACCTCCAGAACAACATCATCGGGGAGATGAAAAACCTGCACCACATG
AAGGAGCTCGAGTACCTCAACCTCGCGCTCAACAACATCGCCAAGGTT
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