mRNA_L-elsbetiae_contig9670.18646.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9670.18646.1
Unique NamemRNA_L-elsbetiae_contig9670.18646.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: A0A835YYD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-16
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    4 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDDSRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSSRCVLGREHSFQGVTRYH 276
            A++L FGSARAK RE W  A+A A    AAA   ++R    K  +K ++  WMG+  +K+ +L+ L+TAW VS  C LGR+HS  GVTRYH
Sbjct:   86 ATILVFGSARAKSREEWAAALAAARALEAAAAAGEARXXXXKAARKIERTAWMGDMTDKIVELSRLLTAWGVSDACHLGRDHSISGVTRYH 176
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: A0A835ZEY0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-13
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    4 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDDSRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSSRCVLGREHSFQGVTRYH 276
            A+VL FGSARAK +E WE AV                 AA K L+K +K  WMGE  +K+ +L+ L+T WAVS  C LG++H+  GVTRYH
Sbjct:   64 ATVLVFGSARAKSQEDWEAAVXXXXXXXXXXXXXXXX-AATKALQKIEKTSWMGEMTDKIVELSRLLTEWAVSPECRLGKDHTISGVTRYH 153
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: A0A7S3RRM5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RRM5_9SPIT)

HSP 1 Score: 62.4 bits (150), Expect = 1.690e-9
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:    4 ASVLFFGSARAKDREGWEKAVAKAEEELAAATD-DDSRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSSRCVLG----------------REHSFQGVTRYHQLRKSSMDTEPEVDTQSGPGTYI 345
            A+++FFGSAR+KD+E +  A AKA   +A  +   D R+ AE  L + KK EWM E  EK+ +LA+ +T+W++ ++  L                 ++ +  G T+ H L  SS D     D  + PG Y+
Sbjct:   54 ATIMFFGSARSKDKEQYADAFAKANAAIAKTSPGSDDRELAEAALDRLKKGEWMCEYMEKIRELAKRLTSWSIDTKYRLKNQISGVSRNTAARIKHKKEAAAGKTKLHYLPHSSEDYSAAED--ASPGIYV 182
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: R1FLW8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FLW8_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 2.880e-8
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    4 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDDSRKA-AEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSSRCVLGREHSFQGVTR 270
            A+++FFGSAR+KDR  ++ A+AK+ + +A A D  S +A A   L++ +K EWM E  EK+ +LA+ VT W++ ++  L  + S  GV+R
Sbjct:   76 ATIMFFGSARSKDRAQYDDALAKSRKAVAEAPDGSSEQALARGTLERLQKSEWMCEYMEKIRQLAQRVTEWSIKTKYSLANQVS--GVSR 163
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: A0A7S4IS05_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IS05_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 9.710e-8
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:    4 ASVLFFGSARAKDREGWEKAVAKAEEEL-AAATDDDSRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSSRCVLGREHSFQGVTRYHQLRKS-SMDTEPEVDTQSGPGTYI 345
            A++ FFGSARA+DR  ++KA+A+   +L AAA + D+   AE+ +KK K+ EWM      + +LA  VTAW+++        HS Q V+   + + +  M  E  V+  S P T +
Sbjct:  117 ATIQFFGSARARDRHQFDKAMAETVAKLDAAAPESDAHTDAEERIKKLKQIEWMVPYMASIQELARRVTAWSMT-------RHSRQAVSGVDRTKSALRMSRENLVELGSAPMTGV 225
[Close]
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Match: A0A812Q2N3_9DINO (Log protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q2N3_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 5.520e-6
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    7 SVLFFGSARAKDREGWEKAVAKAEEELAAATDDDSRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVS 222
            ++LF+GSARA+    W   +  AE +LA+A+D+++R AA+  + +  KC+WM +     A L+E +T WA +
Sbjct:   77 TILFYGSARARPPAAWAAQLEAAEADLASASDEEARAAAQACIDRLHKCKWMSDLYSATADLSERLTRWATT 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9670.18646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YYD6_9STRA1.170e-1648.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEY0_9STRA1.120e-1347.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3RRM5_9SPIT1.690e-933.59Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
R1FLW8_EMIHU2.880e-841.11Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S4IS05_9EUKA9.710e-836.21Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A812Q2N3_9DINO5.520e-637.50Log protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9670contigL-elsbetiae_contig9670:197..1890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2903.EOD36616
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Possible lysine decarboxylase
EggNOG OGs2QT54@2759,COG1611@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_000130.1
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9670.18646.1prot_L-elsbetiae_contig9670.18646.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9670 197..1890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.8193579-CDS-L-elsbetiae_contig9670:196..3761622817031.8193579-CDS-L-elsbetiae_contig9670:196..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 197..376 -
1691683995.896286-CDS-L-elsbetiae_contig9670:196..3761691683995.896286-CDS-L-elsbetiae_contig9670:196..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 197..376 -
1622817031.833327-CDS-L-elsbetiae_contig9670:871..9341622817031.833327-CDS-L-elsbetiae_contig9670:871..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 872..934 -
1691683995.9100268-CDS-L-elsbetiae_contig9670:871..9341691683995.9100268-CDS-L-elsbetiae_contig9670:871..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 872..934 -
1622817031.8452027-CDS-L-elsbetiae_contig9670:1773..18901622817031.8452027-CDS-L-elsbetiae_contig9670:1773..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 1774..1890 -
1691683995.9220805-CDS-L-elsbetiae_contig9670:1773..18901691683995.9220805-CDS-L-elsbetiae_contig9670:1773..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9670 1774..1890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9670.18646.1

>prot_L-elsbetiae_contig9670.18646.1 ID=prot_L-elsbetiae_contig9670.18646.1|Name=mRNA_L-elsbetiae_contig9670.18646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
SASVLFFGSARAKDREGWEKAVAKAEEELAAATDDDSRKAAEKNLKKWKK
CEWMGESAEKVAKLAELVTAWAVSSRCVLGREHSFQGVTRYHQLRKSSMD
TEPEVDTQSGPGTYIHIRR*
back to top

mRNA from alignment at L-elsbetiae_contig9670:197..1890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9670.18646.1 ID=mRNA_L-elsbetiae_contig9670.18646.1|Name=mRNA_L-elsbetiae_contig9670.18646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1694bp|location=Sequence derived from alignment at L-elsbetiae_contig9670:197..1890- (Laminarionema elsbetiae ELsaHSoW15)
TCAGCGTCGGTGCTGTTCTTCGGCTCTGCCCGCGCCAAGGACCGCGAGGG
GTGGGAGAAGGCCGTCGCCAAGGCGGAGGAGGAGCTGGCGGCCGCCACTG
ACGACGACTCGCGAAAGGTGCGATGTATATCTGCGCGGAATCTCGTAGAT
CTCGTAGATCTAGTCGAATTCATGGACGGACGGCAGAGGAGTGTGTCCGG
GTGCCTGCCTGCCTGCTGGCCTGCTTGCCTGCCTGCCCTTGCGTGCGTAT
CGTGTGTGTTTGAAAGTAACGTGTGTGTATGTTGGCGTTGATTTATATGC
GGGGAATTTTTTCGCAACTACAACAGTGTTCTGTTATCGTCGACGTCGTC
ATTTACTACAAACGGTGTTTTTTCAGTGTCATTTGATGGTCATGTCGCGT
TGGGATGTTTTGTTTGTTGTTGATCGGGGCTGCTTTCTTTGCCCTTCTTT
GTATTGCGGTAGTTCCGTTGCTGGGCGGGGCGCATGTATACCACATGTTT
TTTTTATTCTTCCATCATTGGCATATTGGTCGTCTGCCCCACTGGCCCCC
TTCCTCCACTATGACTAGCTAGACGACCCAACCGGGGTCACGCAGTTGTC
GCACATACATATGTACATGGGATAAATATGTAAATCTGGTATTGTCGACC
CCGAGGCCGGGTTCGGCATTCGCAGCAGGAACACCAAGCACGGAGGGGGG
GGGGTGTCTGTTATTTGTTTTTGGGGGGGCGGGGCGTTTGAAAGCCTGGC
GCCTCTCCCCTTCCACACAATATGGATGTCTTGAAGAGGTATTTTATTTG
TCAAGAATGCGTGTTGATCCCCATGGCGTAGCAGCCGTCTTTCAGCGATT
TCCGGTGTGTTCCATGAAAAGATATTGGCATGTTTGGTAAACGTTAACGT
TCATGATCAGAAATCGAAAAATGTTTTTCCACCCCATTTCTCTGTTTTTT
CACCAGGCGGCGGAAAAGAACCTCAAGAAATGGAAGAAGTGCGAGTGGAT
GGGAGAGTCCGCCGAGAAGGTGCGTAAAATACAAATATTGGGGGCACAGC
GGAGGGGAAGATCCGGCACGGATATACCCCCAACAACGACCCCCGATTAC
TACTGGTGAAGTGACAGGAGCGTGATCACTCGTTGCCTTCTTCCCCCCTA
ATAAAAGCTTCACAATGTCTAAGAGTGTGGACAGCAGGAAGAAACAACCG
TATTTTACAGGACAACGCTGTGTTTTACGTCGACCGTGTCTGCTCTCGCT
GTTGTTCTCTATATTTCTCTCTCTCGTCTACGGCTGCTGCTGCTGCTGCT
GTTGCTGCTACTGCATGTAGTGTGGGCTGATTCTGATGCTGCTGCGAAAG
TGTTCTTTTTTCTTCCTTTCTGGCCGTTTTGGCGCTGTTGGTGGCGCATC
AATGGTGTCGGTTCTTGACGTCACCCAGTAGTAACTGCGCCCCACGCCAC
CACCAAACGCCGCCGCCGCCGCTGCCGCCGCTGCCTTTTTTTTCTGGACG
AAAACAAACCTCAGGTCGCCAAGCTGGCGGAGCTGGTGACTGCGTGGGCG
GTGTCAAGCCGCTGCGTCCTCGGCCGAGAGCACTCGTTCCAGGGCGTGAC
GAGGTACCACCAGCTGCGCAAGTCCTCCATGGACACGGAACCCGAGGTGG
ACACACAGAGTGGCCCAGGTACGTACATACACATACGTAGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9670:197..1890-

>mRNA_L-elsbetiae_contig9670.18646.1 ID=mRNA_L-elsbetiae_contig9670.18646.1|Name=mRNA_L-elsbetiae_contig9670.18646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig9670:197..1890- (Laminarionema elsbetiae ELsaHSoW15)
TCAGCGTCGGTGCTGTTCTTCGGCTCTGCCCGCGCCAAGGACCGCGAGGG
GTGGGAGAAGGCCGTCGCCAAGGCGGAGGAGGAGCTGGCGGCCGCCACTG
ACGACGACTCGCGAAAGTCAGCGTCGGTGCTGTTCTTCGGCTCTGCCCGC
GCCAAGGACCGCGAGGGGTGGGAGAAGGCCGTCGCCAAGGCGGAGGAGGA
GCTGGCGGCCGCCACTGACGACGACTCGCGAAAGGCGGCGGAAAAGAACC
TCAAGAAATGGAAGAAGTGCGAGTGGATGGGAGAGTCCGCCGAGAAGGCG
GCGGAAAAGAACCTCAAGAAATGGAAGAAGTGCGAGTGGATGGGAGAGTC
CGCCGAGAAGGTCGCCAAGCTGGCGGAGCTGGTGACTGCGTGGGCGGTGT
CAAGCCGCTGCGTCCTCGGCCGAGAGCACTCGTTCCAGGGCGTGACGAGG
TACCACCAGCTGCGCAAGTCCTCCATGGACACGGAACCCGAGGTGGACAC
ACAGAGTGGCCCAGGTACGTACATACACATACGTAGGTAGGTCGCCAAGC
TGGCGGAGCTGGTGACTGCGTGGGCGGTGTCAAGCCGCTGCGTCCTCGGC
CGAGAGCACTCGTTCCAGGGCGTGACGAGGTACCACCAGCTGCGCAAGTC
CTCCATGGACACGGAACCCGAGGTGGACACACAGAGTGGCCCAGGTACGT
ACATACACATACGTAGGTAG
back to top