mRNA_L-elsbetiae_contig967.18644.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig967.18644.1
Unique NamemRNA_L-elsbetiae_contig967.18644.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig967.18644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig967contigL-elsbetiae_contig967:20559..20958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.6045687-CDS-L-elsbetiae_contig967:20558..209061622817031.6045687-CDS-L-elsbetiae_contig967:20558..20906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig967 20559..20906 +
1691683995.730273-CDS-L-elsbetiae_contig967:20558..209061691683995.730273-CDS-L-elsbetiae_contig967:20558..20906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig967 20559..20906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.6195164-UTR-L-elsbetiae_contig967:20906..209581622817031.6195164-UTR-L-elsbetiae_contig967:20906..20958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 20907..20958 +
1691683995.7409275-UTR-L-elsbetiae_contig967:20906..209581691683995.7409275-UTR-L-elsbetiae_contig967:20906..20958Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 20907..20958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig967.18644.1prot_L-elsbetiae_contig967.18644.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig967 20559..20906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig967.18644.1

>prot_L-elsbetiae_contig967.18644.1 ID=prot_L-elsbetiae_contig967.18644.1|Name=mRNA_L-elsbetiae_contig967.18644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
RTPCWCRRSLRSAAPCRRRRRPKRPRIRGEALLVPRVGAARLLACAGGGS
RPRLIAAPGVDRAHPGVQYGVGRRQRAREFVLAAVAAAQRRAPGVAHTRE
RASPVRPPPSPPAAE*
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mRNA from alignment at L-elsbetiae_contig967:20559..20958+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig967.18644.1 ID=mRNA_L-elsbetiae_contig967.18644.1|Name=mRNA_L-elsbetiae_contig967.18644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=400bp|location=Sequence derived from alignment at L-elsbetiae_contig967:20559..20958+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACGCCTTGCTGGTGTCGACGCTCCCTTAGGAGCGCGGCGCCTTGTCG
GCGGCGGCGACGCCCTAAGAGGCCGAGAATTCGTGGCGAAGCACTCCTCG
TTCCCCGGGTTGGAGCCGCTCGACTCCTTGCGTGTGCCGGCGGCGGGAGC
CGGCCACGCCTCATCGCCGCCCCCGGAGTAGACCGCGCCCACCCTGGCGT
TCAGTACGGCGTTGGCCGCCGCCAGCGAGCACGGGAGTTCGTCCTGGCTG
CCGTGGCTGCTGCCCAGAGACGTGCCCCAGGCGTCGCGCATACCCGAGAG
CGTGCCTCGCCCGTCCGGCCGCCGCCGTCCCCTCCCGCCGCCGAATGACT
GGAGGTCTTCCCCCTCGCTGTAGCTGTCGCCGTCTGCTCGGGCGCCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig967:20559..20958+

>mRNA_L-elsbetiae_contig967.18644.1 ID=mRNA_L-elsbetiae_contig967.18644.1|Name=mRNA_L-elsbetiae_contig967.18644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig967:20559..20958+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACGCCTTGCTGGTGTCGACGCTCCCTTAGGAGCGCGGCGCCTTGTCG
GCGGCGGCGACGCCCTAAGAGGCCGAGAATTCGTGGCGAAGCACTCCTCG
TTCCCCGGGTTGGAGCCGCTCGACTCCTTGCGTGTGCCGGCGGCGGGAGC
CGGCCACGCCTCATCGCCGCCCCCGGAGTAGACCGCGCCCACCCTGGCGT
TCAGTACGGCGTTGGCCGCCGCCAGCGAGCACGGGAGTTCGTCCTGGCTG
CCGTGGCTGCTGCCCAGAGACGTGCCCCAGGCGTCGCGCATACCCGAGAG
CGTGCCTCGCCCGTCCGGCCGCCGCCGTCCCCTCCCGCCGCCGAATGACG
GACGCCTTGCTGGTGTCGACGCTCCCTTAGGAGCGCGGCGCCTTGTCGGC
GGCGGCGACGCCCTAAGAGGCCGAGAATTCGTGGCGAAGCACTCCTCGTT
CCCCGGGTTGGAGCCGCTCGACTCCTTGCGTGTGCCGGCGGCGGGAGCCG
GCCACGCCTCATCGCCGCCCCCGGAGTAGACCGCGCCCACCCTGGCGTTC
AGTACGGCGTTGGCCGCCGCCAGCGAGCACGGGAGTTCGTCCTGGCTGCC
GTGGCTGCTGCCCAGAGACGTGCCCCAGGCGTCGCGCATACCCGAGAGCG
TGCCTCGCCCGTCCGGCCGCCGCCGTCCCCTCCCGCCGCCGAATGA
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