mRNA_L-elsbetiae_contig9669.18642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9669.18642.1
Unique NamemRNA_L-elsbetiae_contig9669.18642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9669.18642.1 vs. uniprot
Match: A0A6H5JB15_9PHAE (AhpC-TSA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB15_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.760e-16
Identity = 50/70 (71.43%), Postives = 51/70 (72.86%), Query Frame = 2 
Query:   26 MGKQGELMEQMAKAQRDRKKRELEEKLRESGDLPPAEDAAPKSDVTAK-KAGRIKPDRSWREAAGAAATS 232
            MGKQGELMEQMAKAQRDR KRELEEKLRESGDLP  ED        AK  A RIKPDRSWR+A  A   S
Sbjct:    1 MGKQGELMEQMAKAQRDRMKRELEEKLRESGDLPKEEDDDAAKPAAAKGAAARIKPDRSWRQAGAAKPPS 70
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9669.18642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JB15_9PHAE5.760e-1671.43AhpC-TSA domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9669contigL-elsbetiae_contig9669:5019..6345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9669.18642.1prot_L-elsbetiae_contig9669.18642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9669 5019..6320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.5066974-CDS-L-elsbetiae_contig9669:5018..52071622817031.5066974-CDS-L-elsbetiae_contig9669:5018..5207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9669 5019..5207 -
1691683995.6914456-CDS-L-elsbetiae_contig9669:5018..52071691683995.6914456-CDS-L-elsbetiae_contig9669:5018..5207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9669 5019..5207 -
1622817031.5177605-CDS-L-elsbetiae_contig9669:6194..63201622817031.5177605-CDS-L-elsbetiae_contig9669:6194..6320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9669 6195..6320 -
1691683995.7070992-CDS-L-elsbetiae_contig9669:6194..63201691683995.7070992-CDS-L-elsbetiae_contig9669:6194..6320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9669 6195..6320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.5691009-UTR-L-elsbetiae_contig9669:6320..63451622817031.5691009-UTR-L-elsbetiae_contig9669:6320..6345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9669 6321..6345 -
1691683995.7185004-UTR-L-elsbetiae_contig9669:6320..63451691683995.7185004-UTR-L-elsbetiae_contig9669:6320..6345Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9669 6321..6345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9669.18642.1

>prot_L-elsbetiae_contig9669.18642.1 ID=prot_L-elsbetiae_contig9669.18642.1|Name=mRNA_L-elsbetiae_contig9669.18642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MGKQGELMEQMAKAQRDRKKRELEEKLRESGDLPPAEDAAPKSDVTAKKA
GRIKPDRSWREAAGAAATSSADVNASAAAAAAAGQPPTPRAGGAPTETPG
KAAAA
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mRNA from alignment at L-elsbetiae_contig9669:5019..6345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9669.18642.1 ID=mRNA_L-elsbetiae_contig9669.18642.1|Name=mRNA_L-elsbetiae_contig9669.18642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1327bp|location=Sequence derived from alignment at L-elsbetiae_contig9669:5019..6345- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGGGCTTCTCCAAGGGCGGGATGGGCAAGCAGGGTGAGCTGATGG
AGCAGATGGCGAAAGCGCAGAGGGACAGGAAGAAGAGGGAGCTCGAGGAA
AAGCTGAGGGAAAGCGGAGACTTGCCGCCGGCAGAGGACGCCGCGCCGAA
GGTCAGCGAAGCCGGAACGGCCCTTTTCTTCCTTTTCCGCCCACAGCAGC
AGCACACGATACCCCCTCCCCCCCCCCCCTTAGGTTCCTCCCTCGATGGC
TAAGAAGCCAGAGAAGCGAGAAGCGAGAGGCCAGAAGCCAGAACGGGCTC
TTGCTTCCCGCTATGTGTAAACCATGTACTAATTCCTTTCTTCGTCTTCG
TCTTTGGGTTGGCTTTCTGCGTGACGGGGGGGGGGGGGAAGGGGCGGCGA
AATTTCTCGGCCGATTTTTCTCCACAACGGAGACGGTTTGACGAACGGGA
AATTCTTCAAAAAGTGGGTGAAGATTCTCGGAAAGATCCGTTGAGAGGTC
TGTTGGAGATCTTTGACCAGTCCAACAGTGCACTGCTCGGTAGTATGATA
ACACTTTCCCCGTTCCAGAGAAGGACGTTGGTGGTAAAACCCGTTCTCCC
CCTCGTGGGGAAGCTCAAAAAGAGATTAACGGGTAAGTAATATGTAGTAG
AATCCACCGCTGTTCCGCTGTGAGCTAGAAGGGACAGGGGGGGGGGTGAC
GCAAGAGGGGTGCAGTTGTTGGTGGGGGACACTTTTTGCTTCGCAAACCT
GCTTTTTTTTCAATCGAAAAACGCTCGTCGACACCGAAACCGCCTCTCGG
GCCTTGTTCCCTTTCGTACATCCTCGCAAAAAAGCTTTCTGCGTACAAAA
TTACAATACTACTGTACGTATGTAATGTATAAGGTATGTATGTAAAACCC
GAGAGGAACAGCAGTAGTGATGCCATGGTCACAAACCGCAGCAGCGTTCA
CATGGCAACGAACGATCAGCCTACCATCGGGGGAGAGAAGCAGCAACAGC
AGTGTTCAGCACTTCCCAAACAACGAAGCAAATCCCTTGTATAGCCCCCC
CCCCCCACCCCCCCGTACACTTGGAAACAATCGCCCCCCCCCCCCACACC
GACCGCCCTCCCCCCCCCTCTGCACACAAAAAAAAAAGTCTGACGTCACG
GCCAAAAAAGCGGGGAGAATTAAGCCGGACAGGTCGTGGCGAGAAGCTGC
CGGCGCCGCGGCGACCTCCTCAGCGGACGTAAACGCATCAGCAGCAGCAG
CAGCAGCAGCAGGACAGCCGCCGACGCCCAGAGCGGGAGGGGCTCCCACA
GAGACACCAGGCAAGGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9669:5019..6345-

>mRNA_L-elsbetiae_contig9669.18642.1 ID=mRNA_L-elsbetiae_contig9669.18642.1|Name=mRNA_L-elsbetiae_contig9669.18642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9669:5019..6345- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAAGCAGGGTGAGCTGATGGAGCAGATGGCGAAAGCGCAGAGGGA
CAGGAAGAAGAGGGAGCTCGAGGAAAAGCTGAGGGAAAGCGGAGACTTGC
CGCCGGCAGAGGACGCCGCGCCGAAGATGGGCAAGCAGGGTGAGCTGATG
GAGCAGATGGCGAAAGCGCAGAGGGACAGGAAGAAGAGGGAGCTCGAGGA
AAAGCTGAGGGAAAGCGGAGACTTGCCGCCGGCAGAGGACGCCGCGCCGA
AGTCTGACGTCACGGCCAAAAAAGCGGGGAGAATTAAGCCGGACAGGTCG
TGGCGAGAAGCTGCCGGCGCCGCGGCGACCTCCTCAGCGGACGTAAACGC
ATCAGCAGCAGCAGCAGCAGCAGCAGGACAGCCGCCGACGCCCAGAGCGG
GAGGGGCTCCCACAGAGACACCAGGCAAGGCGGCGGCGGCGTCTGACGTC
ACGGCCAAAAAAGCGGGGAGAATTAAGCCGGACAGGTCGTGGCGAGAAGC
TGCCGGCGCCGCGGCGACCTCCTCAGCGGACGTAAACGCATCAGCAGCAG
CAGCAGCAGCAGCAGGACAGCCGCCGACGCCCAGAGCGGGAGGGGCTCCC
ACAGAGACACCAGGCAAGGCGGCGGCGGCG
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