mRNA_L-elsbetiae_contig9668.18641.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9668.18641.1
Unique NamemRNA_L-elsbetiae_contig9668.18641.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9668.18641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9668contigL-elsbetiae_contig9668:6333..6676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.4546444-CDS-L-elsbetiae_contig9668:6332..66471622817031.4546444-CDS-L-elsbetiae_contig9668:6332..6647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9668 6333..6647 +
1691683995.6725683-CDS-L-elsbetiae_contig9668:6332..66471691683995.6725683-CDS-L-elsbetiae_contig9668:6332..6647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9668 6333..6647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.4723115-UTR-L-elsbetiae_contig9668:6647..66761622817031.4723115-UTR-L-elsbetiae_contig9668:6647..6676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9668 6648..6676 +
1691683995.6821492-UTR-L-elsbetiae_contig9668:6647..66761691683995.6821492-UTR-L-elsbetiae_contig9668:6647..6676Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9668 6648..6676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9668.18641.1prot_L-elsbetiae_contig9668.18641.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9668 6333..6647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9668.18641.1

>prot_L-elsbetiae_contig9668.18641.1 ID=prot_L-elsbetiae_contig9668.18641.1|Name=mRNA_L-elsbetiae_contig9668.18641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MLLNLKIQAGFLGYTDRWPEVQVEGGFVQPGAILGWPYFSTPFEIGTLVN
LLGNLLGWQKYGRNTTSRLSVGHLLCAEGLFTTVFFPFGRVSNKKKRKKW
ARTP*
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mRNA from alignment at L-elsbetiae_contig9668:6333..6676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9668.18641.1 ID=mRNA_L-elsbetiae_contig9668.18641.1|Name=mRNA_L-elsbetiae_contig9668.18641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=344bp|location=Sequence derived from alignment at L-elsbetiae_contig9668:6333..6676+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTAAATTTAAAAATACAAGCGGGCTTTCTCGGGTACACAGACAG
GTGGCCAGAGGTACAGGTTGAGGGAGGCTTTGTGCAACCAGGAGCGATTT
TAGGTTGGCCATATTTTTCAACCCCATTCGAAATCGGCACCTTGGTCAAC
CTCTTAGGCAACCTCCTAGGTTGGCAAAAGTATGGTCGAAACACTACTTC
ACGGCTTAGTGTAGGGCATTTGCTATGCGCTGAAGGTCTTTTTACAACTG
TCTTTTTTCCATTCGGCCGGGTTTCAAATAAAAAAAAGCGAAAAAAATGG
GCTCGAACTCCGTGAGTGCACCCTCATACGCCGCCTAGACCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9668:6333..6676+

>mRNA_L-elsbetiae_contig9668.18641.1 ID=mRNA_L-elsbetiae_contig9668.18641.1|Name=mRNA_L-elsbetiae_contig9668.18641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9668:6333..6676+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTAAATTTAAAAATACAAGCGGGCTTTCTCGGGTACACAGACAG
GTGGCCAGAGGTACAGGTTGAGGGAGGCTTTGTGCAACCAGGAGCGATTT
TAGGTTGGCCATATTTTTCAACCCCATTCGAAATCGGCACCTTGGTCAAC
CTCTTAGGCAACCTCCTAGGTTGGCAAAAGTATGGTCGAAACACTACTTC
ACGGCTTAGTGTAGGGCATTTGCTATGCGCTGAAGGTCTTTTTACAACTG
TCTTTTTTCCATTCGGCCGGGTTTCAAATAAAAAAAAGCGAAAAAAATGG
GCTCGAACTCCGTGAATGCTTCTAAATTTAAAAATACAAGCGGGCTTTCT
CGGGTACACAGACAGGTGGCCAGAGGTACAGGTTGAGGGAGGCTTTGTGC
AACCAGGAGCGATTTTAGGTTGGCCATATTTTTCAACCCCATTCGAAATC
GGCACCTTGGTCAACCTCTTAGGCAACCTCCTAGGTTGGCAAAAGTATGG
TCGAAACACTACTTCACGGCTTAGTGTAGGGCATTTGCTATGCGCTGAAG
GTCTTTTTACAACTGTCTTTTTTCCATTCGGCCGGGTTTCAAATAAAAAA
AAGCGAAAAAAATGGGCTCGAACTCCGTGA
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