mRNA_L-elsbetiae_contig9663.18638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9663.18638.1
Unique NamemRNA_L-elsbetiae_contig9663.18638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9663.18638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9663contigL-elsbetiae_contig9663:243..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-13_000620.1
Exons3
Model size331
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9663.18638.1prot_L-elsbetiae_contig9663.18638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9663 243..1258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.1704009-CDS-L-elsbetiae_contig9663:242..4261622817031.1704009-CDS-L-elsbetiae_contig9663:242..426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 243..426 +
1691683995.572929-CDS-L-elsbetiae_contig9663:242..4261691683995.572929-CDS-L-elsbetiae_contig9663:242..426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 243..426 +
1622817031.1847007-CDS-L-elsbetiae_contig9663:838..9101622817031.1847007-CDS-L-elsbetiae_contig9663:838..910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 839..910 +
1691683995.5840783-CDS-L-elsbetiae_contig9663:838..9101691683995.5840783-CDS-L-elsbetiae_contig9663:838..910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 839..910 +
1622817031.1966965-CDS-L-elsbetiae_contig9663:1184..12581622817031.1966965-CDS-L-elsbetiae_contig9663:1184..1258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 1185..1258 +
1691683995.592667-CDS-L-elsbetiae_contig9663:1184..12581691683995.592667-CDS-L-elsbetiae_contig9663:1184..1258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9663 1185..1258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9663.18638.1

>prot_L-elsbetiae_contig9663.18638.1 ID=prot_L-elsbetiae_contig9663.18638.1|Name=mRNA_L-elsbetiae_contig9663.18638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
YEIRSLHSEIQDPLNLHEHTLVLFRVHAALLGFTPVAGPIPPALGGLTTL
QELRLNQTRLNGPIPPQLGGLTALQHLDLKLNRLSGPIPPEFGELTALMT
LDLSGNLLSG
back to top

mRNA from alignment at L-elsbetiae_contig9663:243..1258+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9663.18638.1 ID=mRNA_L-elsbetiae_contig9663.18638.1|Name=mRNA_L-elsbetiae_contig9663.18638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1016bp|location=Sequence derived from alignment at L-elsbetiae_contig9663:243..1258+ (Laminarionema elsbetiae ELsaHSoW15)
TACGAAATACGGAGCCTCCACTCGGAAATCCAGGATCCATTGAACTTACA
CGAACATACCTTGGTTCTTTTCCGCGTTCACGCTGCGCTCCTCGGATTTA
CCCCCGTTGCAGGTCCGATCCCACCGGCGCTGGGCGGGTTGACAACTCTA
CAGGAGCTTCGGCTCAACCAAACCCGGCTCAACGGTGAGTCACACCAGTC
TTGGAGCCCTACGAACCCCCGACGGACATGCAGTAATATCGACCCCGAGG
TTGTTACGTTACCCGCGTCGTATCGCTCGAGGGGCCCAATTAGACTGTCT
TGCCAAAATTCAGCGAGTATTGTAGCTTGCGCGCGTTGTCGAGATTCGGG
ACGCCGCGGTGTGCAAGGAGCCCTCAGTGCGCAGTTGCCGGGAGATGTTG
GGGCTCGAGGGCTGAGACTGCGCTCCTAGAAAACAAGTGTAGCTGTACTT
TTCTCGACAGCGTAAAATGATGGCGGAATGCCTTCTTGTTCGGCCACCTG
TTGCCAAGTTTGTACCTCCTTGGCTTGCAGAGTAGGGTAAAGGACAACGT
CGTGTGTCCGTCCAATTCTGGTGAATGCCGCGCGGAACTTGTTCAGGTCC
AATCCCGCCGCAGCTGGGCGGACTAACGGCTCTACAGCACCTCGACCTCA
AGCTGAATCGTCTTTCTGGTGAGAGTTTGTAGCGGCGTTTGCCTCAAACA
ACGCTGAACCAGAGATTGAGCGAGATATTTTCCCAACCTGCTACACTTGT
CTCCCTTCATTCCCCGTCGCATGTCGCAACAGGACGTGCTACCATCAAAA
CTTCTCCCCGTCGTTTCGTCCATGCCTCACGCTTTCCTCACGATTGCCAA
AAATGTCGTGCTGCGGCGATAGCAGCCGATACTATTAACCGCTCGTGCGT
GAGCCAAATTGCTTTGCTCTCCTGATGCCGTCGCATGTCTAGGTCCAATT
CCGCCGGAATTCGGTGAGCTCACGGCTCTGATGACGCTTGACCTCAGCGG
CAACTTGCTCAGCGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9663:243..1258+

>mRNA_L-elsbetiae_contig9663.18638.1 ID=mRNA_L-elsbetiae_contig9663.18638.1|Name=mRNA_L-elsbetiae_contig9663.18638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig9663:243..1258+ (Laminarionema elsbetiae ELsaHSoW15)
TACGAAATACGGAGCCTCCACTCGGAAATCCAGGATCCATTGAACTTACA
CGAACATACCTTGGTTCTTTTCCGCGTTCACGCTGCGCTCCTCGGATTTA
CCCCCGTTGCAGGTCCGATCCCACCGGCGCTGGGCGGGTTGACAACTCTA
CAGGAGCTTCGGCTCAACCAAACCCGGCTCAACGTACGAAATACGGAGCC
TCCACTCGGAAATCCAGGATCCATTGAACTTACACGAACATACCTTGGTT
CTTTTCCGCGTTCACGCTGCGCTCCTCGGATTTACCCCCGTTGCAGGTCC
GATCCCACCGGCGCTGGGCGGGTTGACAACTCTACAGGAGCTTCGGCTCA
ACCAAACCCGGCTCAACGGTCCAATCCCGCCGCAGCTGGGCGGACTAACG
GCTCTACAGCACCTCGACCTCAAGCTGAATCGTCTTTCTGGTCCAATCCC
GCCGCAGCTGGGCGGACTAACGGCTCTACAGCACCTCGACCTCAAGCTGA
ATCGTCTTTCTGGTCCAATTCCGCCGGAATTCGGTGAGCTCACGGCTCTG
ATGACGCTTGACCTCAGCGGCAACTTGCTCAGCGGTGTCCAATTCCGCCG
GAATTCGGTGAGCTCACGGCTCTGATGACGCTTGACCTCAGCGGCAACTT
GCTCAGCGGT
back to top