mRNA_L-elsbetiae_contig966.18637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig966.18637.1
Unique NamemRNA_L-elsbetiae_contig966.18637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.350e-30
Identity = 90/195 (46.15%), Postives = 101/195 (51.79%), Query Frame = 1 
Query:   13 AAAGDGGREGRNISDEWLLKIERFTVAQPEQTVPLADVYGDSFVSSDDGGSDGLDTEEDEEA----------PATR--------YPHAGGAAAVPASCGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVEACRREHEARGT 543
            A  G G REG +    WLL++E +TVAQPEQ + L D    S    DD G D   T+  EEA            TR         P  G   A P +                                   GAIVRELSLTV+RGHN+LITGPSGCGKTSLLR++AGLWEAAAGTVELCPRVEAC R HE RGT
Sbjct:  680 ADGGGGEREGDDPG--WLLRVEGYTVAQPEQQLGLGDDC--SSEEDDDSGDDADVTDPREEAVDGDANGSGGDDTRGVGVDRVVSPKDGETLASPGA----GRGGRGSRSNNRRTARGTLAAGAEQHGSRGAGAIVRELSLTVRRGHNVLITGPSGCGKTSLLRTIAGLWEAAAGTVELCPRVEACLRAHEERGT 866
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: A0A6H5KC31_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC31_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.610e-30
Identity = 86/192 (44.79%), Postives = 99/192 (51.56%), Query Frame = 1 
Query:   16 AAGDGGREGRNISDEWLLKIERFTVAQPEQTVPLADVYGDSFVSSDDGGSDGLDTEEDEEAPATRYPHAGG----------------AAAVPASCGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVEACRREHEARGT 543
            AA  GG E      +WLL++E +TVAQPEQ + L D    S    DD G +   T+  EEA       +GG                  A+P  C                                  GAIVRELSLTV+RG N+LITGPSGCGKTSLLR++AGLWEAAAGTVELCPRVEAC R HE RGT
Sbjct:  382 AADGGGGERVGDDPDWLLRVEGYTVAQPEQQLGLGDDC--SSEEDDDSGDEANGTDPREEAVDGDANGSGGDNTRGVGVDRVVSPEDGKALP--CPGEGGGGRGRRSNNPRTACGTLAAGAEQHGSRGAGAIVRELSLTVRRGCNVLITGPSGCGKTSLLRTIAGLWEAAAGTVELCPRVEACLRAHEERGT 569
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: K0SL63_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL63_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 7.990e-8
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            ++  L LTV+ G NLLI GPSGCGK+SLLR++AGLW A  G +   P  E
Sbjct:  519 LISGLDLTVRHGENLLIAGPSGCGKSSLLRAIAGLWNAGVGNITRVPDSE 568
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: A0A6L6Q8M1_9BURK (ATP-binding cassette domain-containing protein n=2 Tax=Massilia ginsengisoli TaxID=1462440 RepID=A0A6L6Q8M1_9BURK)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-7
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVEAC 516
            +++ELSL ++ G  LLITG SGCGK+SLLR++AGLW+A +GT+   P +E C
Sbjct:  423 LIKELSLVLKPGDALLITGDSGCGKSSLLRAIAGLWQAGSGTIHH-PPLEEC 473
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: A0A139XDK1_9CYAN (ABC transporter n=1 Tax=Scytonema hofmannii PCC 7110 TaxID=128403 RepID=A0A139XDK1_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.510e-7
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  358 AIVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            AIV  LSL+VQ G  LLI GPSG GK+SLLR++AGLW A  G +   PR E
Sbjct:  389 AIVENLSLSVQSGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGRLMRPPREE 439
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: UPI001685CC5A (ABC transporter ATP-binding protein/permease n=1 Tax=Leptolyngbya sp. FACHB-1624 TaxID=2692802 RepID=UPI001685CC5A)

HSP 1 Score: 59.7 bits (143), Expect = 3.360e-7
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            +V +LS+T+  G  LL+ GPSGCGK+SLLR++AGLW A  GT+ L P +E
Sbjct:  374 LVADLSVTLSTGEGLLVRGPSGCGKSSLLRAIAGLWNAGTGTI-LRPTLE 422
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: A0A3N5IYL2_9CHRO (ABC transporter ATP-binding protein/permease (Fragment) n=1 Tax=Chroococcales cyanobacterium metabat2.561 TaxID=2485785 RepID=A0A3N5IYL2_9CHRO)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-7
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            IV +LSLTVQ+G  LLI GPSG GK+SLLR++AGLW A  G +   P  E
Sbjct:  387 IVEDLSLTVQKGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGRLVRPPLEE 436
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: UPI000402A1D1 (ABC transporter ATP-binding protein/permease n=1 Tax=Pseudoduganella violaceinigra TaxID=246602 RepID=UPI000402A1D1)

HSP 1 Score: 59.3 bits (142), Expect = 4.600e-7
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCP 501
            ++R+L+  V+ G  LLITGPSGCGK+SLLR++AGLW A +G +   P
Sbjct:  395 LIRDLTAVVKPGDALLITGPSGCGKSSLLRAIAGLWNAGSGVIHRPP 441
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: A0A844MJK8_9CYAN (ATP-binding cassette domain-containing protein n=1 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844MJK8_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.610e-7
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  358 AIVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            AIV  LSL+V+ G  LLI GPSG GK+SLLR++AGLW+A  G +   PR E
Sbjct:  389 AIVENLSLSVRAGEGLLIVGPSGRGKSSLLRAIAGLWDAGTGRLVRPPRQE 439
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BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Match: UPI00168325D2 (ATP-binding cassette domain-containing protein n=2 Tax=Nostocales TaxID=1161 RepID=UPI00168325D2)

HSP 1 Score: 59.3 bits (142), Expect = 4.670e-7
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  361 IVRELSLTVQRGHNLLITGPSGCGKTSLLRSVAGLWEAAAGTVELCPRVE 510
            IV+ LSL V+ G  LLI GPSG GK+SLLR++AGLWEA AG + + P++E
Sbjct:  375 IVKNLSLLVESGQGLLIVGPSGRGKSSLLRAIAGLWEAGAGKI-IRPKLE 423
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig966.18637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX4_ECTSI5.350e-3046.15ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A6H5KC31_9PHAE9.610e-3044.79ABC transporter domain-containing protein n=1 Tax=... [more]
K0SL63_THAOC7.990e-856.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6L6Q8M1_9BURK1.020e-755.77ATP-binding cassette domain-containing protein n=2... [more]
A0A139XDK1_9CYAN2.510e-760.78ABC transporter n=1 Tax=Scytonema hofmannii PCC 71... [more]
UPI001685CC5A3.360e-756.00ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A3N5IYL2_9CHRO4.450e-760.00ABC transporter ATP-binding protein/permease (Frag... [more]
UPI000402A1D14.600e-755.32ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A844MJK8_9CYAN4.610e-758.82ATP-binding cassette domain-containing protein n=1... [more]
UPI00168325D24.670e-760.00ATP-binding cassette domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig966contigL-elsbetiae_contig966:20263..20809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue2.2e-27
Seed eggNOG ortholog2880.D7FQX4
Preferred nameABCD2
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759,KOG0064@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size549
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.1306899-CDS-L-elsbetiae_contig966:20262..208081622817031.1306899-CDS-L-elsbetiae_contig966:20262..20808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig966 20263..20808 +
1691683995.5596166-CDS-L-elsbetiae_contig966:20262..208081691683995.5596166-CDS-L-elsbetiae_contig966:20262..20808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig966 20263..20808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig966.18637.1prot_L-elsbetiae_contig966.18637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig966 20263..20808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig966.18637.1

>prot_L-elsbetiae_contig966.18637.1 ID=prot_L-elsbetiae_contig966.18637.1|Name=mRNA_L-elsbetiae_contig966.18637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
PAAPAAAGDGGREGRNISDEWLLKIERFTVAQPEQTVPLADVYGDSFVSS
DDGGSDGLDTEEDEEAPATRYPHAGGAAAVPASCGVSSSVGGGYGGGGRY
GGDTSAAAAAAAVAARRGGAIVRELSLTVQRGHNLLITGPSGCGKTSLLR
SVAGLWEAAAGTVELCPRVEACRREHEARGTG
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mRNA from alignment at L-elsbetiae_contig966:20263..20809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig966.18637.1 ID=mRNA_L-elsbetiae_contig966.18637.1|Name=mRNA_L-elsbetiae_contig966.18637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=547bp|location=Sequence derived from alignment at L-elsbetiae_contig966:20263..20809+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGGCACCGGCGGCCGCGGGCGACGGTGGCAGGGAAGGAAGGAACAT
TTCGGACGAGTGGCTGCTCAAGATTGAAAGGTTCACCGTGGCTCAGCCAG
AGCAAACCGTTCCCCTCGCTGACGTCTACGGCGACTCTTTTGTGAGTTCG
GACGACGGCGGCAGCGACGGCCTCGACACGGAGGAAGACGAAGAAGCCCC
CGCAACCCGTTACCCTCACGCCGGTGGAGCCGCCGCCGTCCCCGCAAGCT
GCGGGGTTTCTTCTTCTGTGGGAGGCGGCTACGGCGGCGGCGGTAGATAC
GGCGGGGACACATCCGCGGCGGCGGCAGCGGCGGCGGTGGCCGCGAGAAG
AGGCGGGGCAATCGTGCGGGAGCTGAGTCTCACCGTCCAACGGGGGCACA
ACCTGCTCATCACGGGACCGAGCGGGTGCGGGAAGACCTCCCTCCTGAGG
AGCGTCGCCGGGCTCTGGGAGGCGGCGGCGGGGACGGTCGAGCTCTGTCC
CCGGGTGGAGGCGTGCAGGCGCGAGCACGAGGCAAGGGGCACCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig966:20263..20809+

>mRNA_L-elsbetiae_contig966.18637.1 ID=mRNA_L-elsbetiae_contig966.18637.1|Name=mRNA_L-elsbetiae_contig966.18637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig966:20263..20809+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGGCACCGGCGGCCGCGGGCGACGGTGGCAGGGAAGGAAGGAACAT
TTCGGACGAGTGGCTGCTCAAGATTGAAAGGTTCACCGTGGCTCAGCCAG
AGCAAACCGTTCCCCTCGCTGACGTCTACGGCGACTCTTTTGTGAGTTCG
GACGACGGCGGCAGCGACGGCCTCGACACGGAGGAAGACGAAGAAGCCCC
CGCAACCCGTTACCCTCACGCCGGTGGAGCCGCCGCCGTCCCCGCAAGCT
GCGGGGTTTCTTCTTCTGTGGGAGGCGGCTACGGCGGCGGCGGTAGATAC
GGCGGGGACACATCCGCGGCGGCGGCAGCGGCGGCGGTGGCCGCGAGAAG
AGGCGGGGCAATCGTGCGGGAGCTGAGTCTCACCGTCCAACGGGGGCACA
ACCTGCTCATCACGGGACCGAGCGGGTGCGGGAAGACCTCCCTCCTGAGG
AGCGTCGCCGGGCTCTGGGAGGCGGCGGCGGGGACGGTCGAGCTCTGTCC
CCGGGTGGAGGCGTGCAGGCGCGAGCACGAGGCAAGGGGCACCGGACCGG
CGGCACCGGCGGCCGCGGGCGACGGTGGCAGGGAAGGAAGGAACATTTCG
GACGAGTGGCTGCTCAAGATTGAAAGGTTCACCGTGGCTCAGCCAGAGCA
AACCGTTCCCCTCGCTGACGTCTACGGCGACTCTTTTGTGAGTTCGGACG
ACGGCGGCAGCGACGGCCTCGACACGGAGGAAGACGAAGAAGCCCCCGCA
ACCCGTTACCCTCACGCCGGTGGAGCCGCCGCCGTCCCCGCAAGCTGCGG
GGTTTCTTCTTCTGTGGGAGGCGGCTACGGCGGCGGCGGTAGATACGGCG
GGGACACATCCGCGGCGGCGGCAGCGGCGGCGGTGGCCGCGAGAAGAGGC
GGGGCAATCGTGCGGGAGCTGAGTCTCACCGTCCAACGGGGGCACAACCT
GCTCATCACGGGACCGAGCGGGTGCGGGAAGACCTCCCTCCTGAGGAGCG
TCGCCGGGCTCTGGGAGGCGGCGGCGGGGACGGTCGAGCTCTGTCCCCGG
GTGGAGGCGTGCAGGCGCGAGCACGAGGCAAGGGGCACCGGA
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