mRNA_L-elsbetiae_contig9657.18635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9657.18635.1
Unique NamemRNA_L-elsbetiae_contig9657.18635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9657.18635.1 vs. uniprot
Match: A0A6H5L5H1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-13
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  360 FDAPTAPYRGEDGLHSKAKXXXXXXXXXPVRKWKNALSFAGRAFKDVVGGDLHPGFTN 533
            + APTAPYRGEDG+ SKAKXXXXXXXXX  R+WKNALSFAG+  K +VG DLHPG+TN
Sbjct: 1053 YHAPTAPYRGEDGILSKAKXXXXXXXXXXARRWKNALSFAGKHLKGIVGADLHPGYTN 1110
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BLAST of mRNA_L-elsbetiae_contig9657.18635.1 vs. uniprot
Match: D7FM46_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM46_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.750e-12
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 3 
Query:  225 AFFGGDSQWGDXXXXXXSRVPSHAGFSRADSESFSNYSGSRSQLVFDAPTAPYRGEDGLHSKAKXXXXXXXXXPVRKWKNALSFAGRAFKDVVGGDLHPGFTN 533
            A +GG  +W         R P ++G       +   +    +   +  PTAPYRGEDG+ SKA XXXXXXXXX  RKWKNA SFAG+  KD+V  DLHPGFT+
Sbjct:  752 AAYGGGEEW---VGGGDGRAPGNSGDGGGQWMNAHQHQYPGAAAPYHTPTAPYRGEDGIQSKAXXXXXXXXXXXXRKWKNAFSFAGKHLKDIVAVDLHPGFTD 851
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9657.18635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5H1_9PHAE1.030e-1375.86Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FM46_ECTSI3.750e-1247.57Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9657contigL-elsbetiae_contig9657:375..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size671
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9657.18635.1prot_L-elsbetiae_contig9657.18635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9657 464..1291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.0081584-UTR-L-elsbetiae_contig9657:374..4631622817031.0081584-UTR-L-elsbetiae_contig9657:374..463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9657 375..463 +
1691683995.4859962-UTR-L-elsbetiae_contig9657:374..4631691683995.4859962-UTR-L-elsbetiae_contig9657:374..463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9657 375..463 +
1622817031.049688-UTR-L-elsbetiae_contig9657:1291..13961622817031.049688-UTR-L-elsbetiae_contig9657:1291..1396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9657 1292..1396 +
1691683995.5259926-UTR-L-elsbetiae_contig9657:1291..13961691683995.5259926-UTR-L-elsbetiae_contig9657:1291..1396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9657 1292..1396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.0251184-CDS-L-elsbetiae_contig9657:463..7721622817031.0251184-CDS-L-elsbetiae_contig9657:463..772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9657 464..772 +
1691683995.5008821-CDS-L-elsbetiae_contig9657:463..7721691683995.5008821-CDS-L-elsbetiae_contig9657:463..772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9657 464..772 +
1622817031.0375757-CDS-L-elsbetiae_contig9657:1123..12911622817031.0375757-CDS-L-elsbetiae_contig9657:1123..1291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9657 1124..1291 +
1691683995.5148847-CDS-L-elsbetiae_contig9657:1123..12911691683995.5148847-CDS-L-elsbetiae_contig9657:1123..1291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9657 1124..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9657.18635.1

>prot_L-elsbetiae_contig9657.18635.1 ID=prot_L-elsbetiae_contig9657.18635.1|Name=mRNA_L-elsbetiae_contig9657.18635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MLMRGSTARVPSESRQSRPHSPFLAHEGGGGGGGGGRGGGRGAAPAFFGG
DSQWGDGSGGGGSRVPSHAGFSRADSESFSNYSGSRSQLVFDAPTAPYRG
EDGLHSKAKAKAEANAPAPVRKWKNALSFAGRAFKDVVGGDLHPGFTNDA
SKKQPAAK*
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mRNA from alignment at L-elsbetiae_contig9657:375..1396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9657.18635.1 ID=mRNA_L-elsbetiae_contig9657.18635.1|Name=mRNA_L-elsbetiae_contig9657.18635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1022bp|location=Sequence derived from alignment at L-elsbetiae_contig9657:375..1396+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGGTAGGTCGCTGTCCCGATCCAACTCGAGCTCGGGCCGCGTGTCC
CCGGTGTCGTCGGGCGGCGGCGGCAGCAACAGGCTCAGGATGCTGATGAG
GGGCTCTACCGCCAGAGTCCCGTCCGAATCGAGGCAGTCGAGGCCGCACA
GTCCGTTCCTCGCGCACGAGGGCGGCGGCGGCGGCGGTGGTGGTGGCCGC
GGCGGTGGCCGCGGAGCGGCTCCTGCTTTTTTCGGCGGTGACAGCCAGTG
GGGCGACGGCAGCGGCGGCGGTGGCAGCAGGGTGCCCTCGCACGCGGGGT
TTAGCCGAGCGGATTCCGAGAGCTTCAGCAACTACAGCGGCAGCCGGTCC
CAGCTAGTGTTCGACGCCCCCACGGCTCCATACCGAGGGGAAGATGGGGT
GAGTCGAGTCAGGGGGGGGTGAGAGGGGAGAGCGGAGAGCGGAGAGCGGG
TGTGCTTTGTTGTTGTTTGTTTGGCGACTACATTTTTCTTTTTTTGCCCC
TCCCATCATTGGCATATTTTCCGTCTGCCCCACTGGCCCCCTTCCTCCAC
TACGACTAGCTAGACAACCCAACCGGGGTGACACACATACTCTGTGTGTG
CATACTACTGCTGTTGCCGTGCCTTGACACGTCCAAAAACTACGAAAGTG
GCGGCAAGAGCTCGCCGGCCCTACCTACTCCCTCCCACACCTTCCCTTCA
CCTCACCCTTCCGTCGACCCTGCCTACCTTCCGCCGCCGTTTGACAAAGC
TGCATAGCAAGGCGAAAGCCAAGGCCGAGGCGAACGCCCCGGCGCCCGTC
CGCAAGTGGAAGAACGCCTTGTCCTTCGCCGGGAGAGCCTTCAAGGATGT
CGTGGGCGGAGACCTGCACCCGGGCTTCACTAACGACGCGAGCAAGAAGC
AGCCCGCTGCGAAGTGAAGAGAAAAAGAGAGGGATTAAGAGAGGGATTGG
ATGGTTTGGTTTGGTTTGGTTTGGTTTGTCTTGCTGTTCGTTTTCTCGAT
CGAAAAAAAGCAAGTTGTCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9657:375..1396+

>mRNA_L-elsbetiae_contig9657.18635.1 ID=mRNA_L-elsbetiae_contig9657.18635.1|Name=mRNA_L-elsbetiae_contig9657.18635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig9657:375..1396+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATGAGGGGCTCTACCGCCAGAGTCCCGTCCGAATCGAGGCAGTC
GAGGCCGCACAGTCCGTTCCTCGCGCACGAGGGCGGCGGCGGCGGCGGTG
GTGGTGGCCGCGGCGGTGGCCGCGGAGCGGCTCCTGCTTTTTTCGGCGGT
GACAGCCAGTGGGGCGACGGCAGCGGCGGCGGTGGCAGCAGGGTGCCCTC
GCACGCGGGGTTTAGCCGAGCGGATTCCGAGAGCTTCAGCAACTACAGCG
GCAGCCGGTCCCAGCTAGTGTTCGACGCCCCCACGGCTCCATACCGAGGG
GAAGATGGGATGCTGATGAGGGGCTCTACCGCCAGAGTCCCGTCCGAATC
GAGGCAGTCGAGGCCGCACAGTCCGTTCCTCGCGCACGAGGGCGGCGGCG
GCGGCGGTGGTGGTGGCCGCGGCGGTGGCCGCGGAGCGGCTCCTGCTTTT
TTCGGCGGTGACAGCCAGTGGGGCGACGGCAGCGGCGGCGGTGGCAGCAG
GGTGCCCTCGCACGCGGGGTTTAGCCGAGCGGATTCCGAGAGCTTCAGCA
ACTACAGCGGCAGCCGGTCCCAGCTAGTGTTCGACGCCCCCACGGCTCCA
TACCGAGGGGAAGATGGGCTGCATAGCAAGGCGAAAGCCAAGGCCGAGGC
GAACGCCCCGGCGCCCGTCCGCAAGTGGAAGAACGCCTTGTCCTTCGCCG
GGAGAGCCTTCAAGGATGTCGTGGGCGGAGACCTGCACCCGGGCTTCACT
AACGACGCGAGCAAGAAGCAGCCCGCTGCGAAGTGACTGCATAGCAAGGC
GAAAGCCAAGGCCGAGGCGAACGCCCCGGCGCCCGTCCGCAAGTGGAAGA
ACGCCTTGTCCTTCGCCGGGAGAGCCTTCAAGGATGTCGTGGGCGGAGAC
CTGCACCCGGGCTTCACTAACGACGCGAGCAAGAAGCAGCCCGCTGCGAA
GTGA
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