mRNA_L-elsbetiae_contig9654.18633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9654.18633.1
Unique NamemRNA_L-elsbetiae_contig9654.18633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 2.520e-136
Identity = 210/262 (80.15%), Postives = 233/262 (88.93%), Query Frame = 1
Query:   28 PAVGRERSIALRNQHARPATPNGGRHVMMVAGVGSVST-ADVDESTLIKNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEGVAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEELRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDKNFLIYVKDY 810
            P +G  RSI   N+H R  +   G+HV+    + SV T ADVDE TLIKNSLLQVAAMTERGQLATEAQ+NDMD L+ERLE+LKA   L P++DENM+G WTLVYSSSQAFRSSPFFATFQAL+G +GVA++IFS TDAFPNAKIGQARQI+NE CTELLSRVEMSVWPHRWISGVVETRSK+VNDDIGD+LE+IVDDTRVSDSILGKISPRLEE+RVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPD+NFL+YVKDY
Sbjct:   23 PGMGSGRSITAGNRHTRHFSCCDGKHVLTTR-MSSVGTPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.340e-41
Identity = 85/198 (42.93%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  229 QRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEGVAQKIFSLTDAFPNAKIGQARQII----NEGCTELLSRVEMSVWPHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISP-RLEELRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDKNFLIYVKD 807
            QR+D++ LV RL++L  + +  PF  ++M+G WTLVYSS + FR  P FA  QAL G      +++ +  A P A++G  +Q I     EG  +    + + V+P  ++ G +ET +++VNDDIGD LE+IV+ + V++S L +  P +     VPV +LSER FDR+PR+ L+T++LD D RV+RLPD   LIYVKD
Sbjct:    2 QRDDVELLVTRLQELVPAEE--PFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLVIRLEVFPWNYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 6.210e-23
Identity = 86/228 (37.72%), Postives = 125/228 (54.82%), Query Frame = 1
Query:  130 SVSTADVDESTLIKNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQ-ALLGGEGVAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEELRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRL-PDKNFLIYVK 804
            +VS+  VD    +K  LL+  A  +RGQ+ATE+Q+ +++ ++ +LE  +A         E + G W LVY+S +AFRSSPFF  FQ  L+G E +A  IF  TDA P A +GQA Q  +    E +S V++ V+P     G V T S V        L L V++TRV+ S L  +   L+ + VPV  + E +  R    ++ D  FLD +LRV+R  PD    +Y K
Sbjct:   29 NVSSVAVDSD--LKKVLLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A7R9UZ95_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9UZ95_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 1.210e-18
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  319 GIWTLVYSSSQAFRSSPFFATFQA--LLGGEGVAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWI---SGVVETRSKVVNDDIGDRLELIVDDTRVSDS-ILGKISPRLEELRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSR-LPDKNFLIY 798
            G W LVYSS +AFRSSPFF  FQ   L G   +A  IF+ TD+ P A IG ARQ I+     L+S V+++V P   +   SG V T   +       RL + V DTRVS S + G++   L++L VPV  + E L      R  + T +LD  LRV R LP+K   +Y
Sbjct:   29 GTWELVYSSVEAFRSSPFFWAFQEGLLAGNVNLASAIFAYTDSVPGATIGSARQTIDTSFGTLVSEVDLTVTPLPGLPGASGAVVTGCDIDASSGDGRLVVTVTDTRVSGSNVAGQL---LDQLSVPVKDIFEALRGSGAARTEVTTTYLDDTLRVMRVLPNKELFVY 193          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 3.860e-18
Identity = 69/174 (39.66%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  319 GIWTLVYSSSQAFRSSPFFATFQALLGG---------------EGVAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWISGVVETRSKVVNDDIGDR-------LELIVDDTRVSDSILGKISPRLEELRVPVDQLSERLF-DRIPRITLDTVFLDQDLRVSR 771
            G W L+Y++++AFR+SPFFA+F  ++ G                 +A  IF+ TDA P A IG A QII  G   L+S V++SV+P   + G V TRS++               LEL V+ TRV  S     SP L+++ VPV+QL ERL      R+T +  FLDQ+LRV+R
Sbjct:  163 GRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 6.480e-18
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 1
Query:  136 STADVDESTLIKNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEGV-AQKIFSLTD-AFPNAKIGQARQIINEGCTELLSRVEMSVW-----PHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEEL--RVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDKNFLIYVK 804
            S  DV     +K+ ++ + A T RGQ+A+E +++ +  LV +LE +  S +          G W LVYS  + FRSSPFF   + L G +   A + FSL   A   ++IG+ +QI+  G + L+S V++ V      P      VV       N D    L++ V  T+VS+S + K    LE++   VPV  + ERL   +P + L+T +LD  +R+SR  D++F +Y++
Sbjct:   70 SEEDVTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAAS---YGTWELVYSDVELFRSSPFFMAVRDLFGDDDEKASQAFSLHRLATSTSEIGKVKQIL--GPSTLVSEVDLKVGTIPSLPFAITGTVVSDAEVTANGD--QSLQVTVGKTKVSNSNILKFL-NLEDMGAAVPVKDVFERLRGSVPTVPLNTYYLDDTMRISRTQDEHFFVYIR 293          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.890e-18
Identity = 77/239 (32.22%), Postives = 128/239 (53.56%), Query Frame = 1
Query:  139 TADVDESTLI-----KNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEG--VAQKIFSLTDAFPNA-KIGQARQIINEGCTELLSRVEMSVW-----PHRWISGVVETRSK--VVNDDIGDRLELIVDDTRVSDSILGKISPRLEE--LRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDKNFLIYVK 804
            + D+DE+  I     K  L+ ++++T RG  AT  + N +  LV +LE L  +         N  G W L YSS+Q+FRSSPFF   ++ LG +   +A+  F + DA   A ++G+ RQII++   EL+S  E+SV      P + + G V T ++  V+  +     EL V  T+V  S +  +   L++  L VPV +  + +   +P  TL T ++D+ LR++R  D+NF ++ +
Sbjct:   52 SVDMDENDAIIRDELKRELILLSSVTNRGSCATTEESNLVVDLVTQLEALNPTADPAA----NCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQ-VKGTVITSAEMSVIRPE---SWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS)

HSP 1 Score: 94.0 bits (232), Expect = 1.380e-17
Identity = 77/239 (32.22%), Postives = 124/239 (51.88%), Query Frame = 1
Query:  139 TADVDESTLI-----KNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDE--NMIGIWTLVYSSSQAFRSSPFFATFQALLG--GEGVAQKIFSLTDAFPNA-KIGQARQIINEGCTELLSRVEMSVW-----PHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEE--LRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDKNFLIYVK 804
            + D+DE   I     K  LL ++++T RGQ A++ + N +  LV +LE       L P  D   N  G W L YSS+Q+FRSSPFF   ++ +G   + +A+  F + D    A ++G+ RQI++ G  EL+S  E+SV      P R + G V T S  +     +  EL V  T+V  S +      L++  L +PV +  + +   +P   L T ++D+ +R+SR  D NF ++ +
Sbjct:   72 SVDIDEDDAIIRDELKRELLLLSSVTNRGQCASQEEENLVVDLVTQLE------ALNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKVRQIVDAGNMELISEYELSVGLLPGLPVR-VKGTVIT-SADMRAIAPETWELTVKATKVKGSNVPFFDQYLDDSGLELPVGEAYKAISGSVPVSVLKTFYVDEGMRISRDVDDNFFVFTR 302          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: A0A1X6P059_PORUM (PAP_fibrillin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P059_PORUM)

HSP 1 Score: 94.4 bits (233), Expect = 2.110e-17
Identity = 75/223 (33.63%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  145 DVDES-TLIKNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEGVAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSD-SILGKISPRLEELRVPVDQLSERLFD-RIPRITLDTVFLDQDLRVSRLPDKNFLIYVK 804
            D D S T +K  LL++AA T+RGQLAT AQ+  ++ LV  LE   A+    P +   + G W LVY+S   F+++P                    L  A P   +GQ +Q++     EL++ VE++ +P   I+G V T ++V     G+RLEL+V+ T V   S+ GK+        +PV+QL  +L +  +P   LDT +LD+ +R+SR    +  +Y K
Sbjct:  154 DADASRTEMKGKLLEIAAATDRGQLATSAQKEAVEDLVSMLE--AANPTDSPVDTALIDGTWLLVYASKPLFKTTPLL------------------LAAATPLLVVGQVKQMLRVDSGELVNDVEVTAFP--MITGTVSTTARVT-PITGERLELVVEKTGVKGKSLAGKLDLGGLGGSLPVEQLYGKLKNGAVPETFLDTFYLDEKMRISRGKGGSIYVYTK 353          
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 8.740e-17
Identity = 80/221 (36.20%), Postives = 120/221 (54.30%), Query Frame = 1
Query:  166 IKNSLLQVAAMTERGQLATEAQRNDMDTLVERLEDLKASGQLGPFEDE--NMIGIWTLVYSSSQAFRSSPFFATFQALLGGEG--VAQKIFSLTDAFPNA-KIGQARQIINEGCTELLSRVEMSVW-----PHRWISGVVETRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEE--LRVPVDQLSERLFDR-IPRITLDTVFLDQDLRVSRLPDKNF 789
            +K  L+ +A+ T RGQ AT  ++N +  LV +LE       L P  D   N  G W L YSS+Q+FRSSPFF   +A LG +   VA+  FS+ D    A ++G+ RQII+   TEL+S  ++SV      P R + G V T S  ++    +  E+ V  TRV  S +  I   L++  + VPV ++ E +    +P   L T ++D+ +R+SR  D+NF
Sbjct:   76 LKRELILLASTTNRGQCATLEEQNLVIDLVTQLE------ALNPTADPALNSQGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKVRQIIDSYNTELISEYDLSVGVAPGLPVR-VKGCVVT-SADLSVSAPETWEMKVRGTRVKSSNVPFIDEWLDDSQVEVPVGRVYEAINGGDVPAAILKTYYVDEGMRISRDADENF 288          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9654.18633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQD7_ECTSI2.520e-13680.15PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZIJ0_9STRA1.340e-4142.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0WSZ6_9CHLO6.210e-2337.72Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7R9UZ95_9CHLO1.210e-1841.67Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A0D2KT63_9CHLO3.860e-1839.66Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A6V1MSR7_HETAK6.480e-1832.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Q3I4_9STRA9.890e-1832.22Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BQA8_THAPS1.380e-1732.22PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A1X6P059_PORUM2.110e-1733.63PAP_fibrillin domain-containing protein n=1 Tax=Po... [more]
K0SUV6_THAOC8.740e-1736.20PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9654contigL-elsbetiae_contig9654:367..4670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score393.7
Seed ortholog evalue6.2e-107
Seed eggNOG ortholog2880.D7FQD7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CY64@1,2S2BE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_006500.1
Exons6
Model size1559
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9654.18633.1prot_L-elsbetiae_contig9654.18633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9654 841..3924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.8121066-UTR-L-elsbetiae_contig9654:366..4711622817030.8121066-UTR-L-elsbetiae_contig9654:366..471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 367..471 +
1691683995.347986-UTR-L-elsbetiae_contig9654:366..4711691683995.347986-UTR-L-elsbetiae_contig9654:366..471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 367..471 +
1622817030.8275156-UTR-L-elsbetiae_contig9654:837..8401622817030.8275156-UTR-L-elsbetiae_contig9654:837..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 838..840 +
1691683995.3616312-UTR-L-elsbetiae_contig9654:837..8401691683995.3616312-UTR-L-elsbetiae_contig9654:837..840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 838..840 +
1622817030.9098024-UTR-L-elsbetiae_contig9654:3924..46701622817030.9098024-UTR-L-elsbetiae_contig9654:3924..4670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 3925..4670 +
1691683995.4344647-UTR-L-elsbetiae_contig9654:3924..46701691683995.4344647-UTR-L-elsbetiae_contig9654:3924..4670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9654 3925..4670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.8422678-CDS-L-elsbetiae_contig9654:840..9181622817030.8422678-CDS-L-elsbetiae_contig9654:840..918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 841..918 +
1691683995.377526-CDS-L-elsbetiae_contig9654:840..9181691683995.377526-CDS-L-elsbetiae_contig9654:840..918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 841..918 +
1622817030.855809-CDS-L-elsbetiae_contig9654:1338..14671622817030.855809-CDS-L-elsbetiae_contig9654:1338..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 1339..1467 +
1691683995.387998-CDS-L-elsbetiae_contig9654:1338..14671691683995.387998-CDS-L-elsbetiae_contig9654:1338..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 1339..1467 +
1622817030.8703535-CDS-L-elsbetiae_contig9654:2326..25471622817030.8703535-CDS-L-elsbetiae_contig9654:2326..2547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 2327..2547 +
1691683995.398333-CDS-L-elsbetiae_contig9654:2326..25471691683995.398333-CDS-L-elsbetiae_contig9654:2326..2547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 2327..2547 +
1622817030.8856473-CDS-L-elsbetiae_contig9654:3218..33831622817030.8856473-CDS-L-elsbetiae_contig9654:3218..3383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 3219..3383 +
1691683995.4117372-CDS-L-elsbetiae_contig9654:3218..33831691683995.4117372-CDS-L-elsbetiae_contig9654:3218..3383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 3219..3383 +
1622817030.8976698-CDS-L-elsbetiae_contig9654:3812..39241622817030.8976698-CDS-L-elsbetiae_contig9654:3812..3924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 3813..3924 +
1691683995.4217572-CDS-L-elsbetiae_contig9654:3812..39241691683995.4217572-CDS-L-elsbetiae_contig9654:3812..3924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9654 3813..3924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9654.18633.1

>prot_L-elsbetiae_contig9654.18633.1 ID=prot_L-elsbetiae_contig9654.18633.1|Name=mRNA_L-elsbetiae_contig9654.18633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MMVAGVGSVSTADVDESTLIKNSLLQVAAMTERGQLATEAQRNDMDTLVE
RLEDLKASGQLGPFEDENMIGIWTLVYSSSQAFRSSPFFATFQALLGGEG
VAQKIFSLTDAFPNAKIGQARQIINEGCTELLSRVEMSVWPHRWISGVVE
TRSKVVNDDIGDRLELIVDDTRVSDSILGKISPRLEELRVPVDQLSERLF
DRIPRITLDTVFLDQDLRVSRLPDKNFLIYVKDY*
back to top

mRNA from alignment at L-elsbetiae_contig9654:367..4670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9654.18633.1 ID=mRNA_L-elsbetiae_contig9654.18633.1|Name=mRNA_L-elsbetiae_contig9654.18633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4304bp|location=Sequence derived from alignment at L-elsbetiae_contig9654:367..4670+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTGGACCGCCAATGGCTTCTCTGGACCTGCCGTGGGGAGGGAGAGGAG TATAGCGCTTCGAAATCAGCACGCACGACCCGCTACCCCCAACGGCGGAA GACATGTGTGTGTTTATTAGACGGGTCATATCTAAGATAGAGCGGCAGAA TGCTCCACAGCACAAGTGTGTACACCTCTGCCTCTGGCGGTGATCTCTTT TGTGACCTCTCTGCACTGCTGTTCCTTGCGCTGTAGAGCCTCTGACCGCC ATATTTCCGGGTGTATCTGACGCATGCCAGCGTTCCCTGGACAGGGTCTC CTCTTGCTGTCAACTGGCTAGGGATGAAAGTGTTTTTGAATCTTCAAGTA ACAAATCGAAGGCGAGGTATTGTTTAGAGTGAATGCCCTCACAAGAATAA TCTTTACGTGTCCACGTCGTCTAACGGTTATCTTTCCTGCCGGCCTGTTG ATGCTGATGTTTGATTTGAAGGTAATGATGGTCGCAGGTGTGGGCTCGGT GAGCACAGCTGATGTCGACGAGAGCACGCTCATCAAAAACTCTCTGCTCC AGGTCAGAGGGAGACGCTGCTCATACTCTGTGCCTCAACACGCTGACCCG TGATATTTTTCAAATGTTTCGGCTTTGACGTGCGCTGTACAATTCGAGAC CAACAGTTTGAGATCCATGATGCTGTGTAGACTCATGTTCTCAAAATCAT AAAAGCATTTATTAAAATCAGTTTAGAGCATGCAAGGTATGGGGCGTAAA TGCACCCTCCGGCGCCGTATGCTGTTGCAGATATTTGGATGTACTGAATC GGACAGCAGTATTAAGAGGGGGCCCTGAAGTTGGAACGCTGCGACGAACA AACTGAGACACCACCCCATGTGCCGTCTGCAACGAGTTCCACAGGTACAT ACGTGCTCACTGCTGTTTTGTCTCTTTGAAAGCCCATTTTGAATAGCTCT ACGGAAAAACGTGCTCCTGAAGGTGGCGGCTATGACAGAGCGCGGCCAGC TGGCAACGGAGGCTCAGCGAAACGACATGGACACGTTGGTGGAGCGCCTG GAGGACCTCAAGGCTAGCGGTCAGCTTGGACCTTTTGAGGACGAGAACAT GGTGAGTGCTCGATCTTCCACTATCCTACTGCTGTGCAGTGGTGTGGTAT TCGGGGAGGCAGGTGAAGGGGTGGGGGGGGGCGTTTGTAGACACGATTAC GAACAAACCCCCTAGACTATAGAGCAGTAACTGTGTGGAGAGGCGGCACA ACATTTGTGCGGATGATTGGGTTGCGTGTGTGACAAGAGGCGTTCCCGTA TGCAGCTTTTTCGTTGTCAGATGGAAACTAAAAAAAGCTAATCCTCGTTC GCTCACACTTAGCGGTCGGGTACGAACTGTTGTGTCACCTAAATAACGCG CGCATCACCAAAAACCAAAAACCCGTGTCTCGCGTACTACATAACACGAA GGTCGCGACCTCTCGATGGGTACATGTATTTACTTCTACTATGATTGGCT CCCTTGGACTACTGCTGTGGTCCGTCAACCTTGTCCCGCCAACCTCTTGA CGCTTGATCATTTCCTTGCTGTTTCCACCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCGTTTTTTTTCCCTCCCTTGTTCGCGCCGGCCCGCCGGCC GCCTCCCTCCCCCCCCCCCCCCCCCCCGCGGCCGGGCNNNNNNNNNNCCC CCCCCCTTCCCCCCCCCCCCCTTTACGCCTTTTTTTTTCCTTTTTTTTTC CCCCCCCCCCCCCCCCCCCCTTTCCGTTCCGCGGCTTATGTACCCCTGAA ATCTGGGACGCCACGGCCGGCGCTATTCCACATCCTGCCCCTCTGAACCG GCGGCGGACGCACCCGACCACGACCACGGACGGACGCAATTAATGGACGG TGCGCGAAACACGAAAACAACGCAACACCGGCCGGGGGGCGAAAATCCCA AAACGAAAAGATCGGGATATGGACGCTTGTCTACTCATCCTCCCAGGCGT TCCGATCCAGCCCGTTCTTCGCGACGTTCCAGGCCCTCCTGGGCGGAGAG GGGGTCGCGCAGAAGATATTCTCCCTCACCGACGCGTTCCCCAACGCCAA GATAGGCCAGGCGCGGCAGATCATCAACGAGGGCTGCACGGAGCTCTTGT CGCGGGTGGAGATGTCAGTCTGGCCTCACAGGTGAGAACCTCGGGCGCGG CTTTTTTTGGAGTTGAATGTATGCCCTGAAATATTGGGTGAACGCACGTG ATGAGATGCTGCAACTAGTACGACACGGAAGAGAAAGATTTGATACTTGG GGGCTCGCGGGGGCGTTGGAAGCGTGGGCTACTTGGGGTTGTGACGCGTA TGTAGCGGGTGGTTAGAAGGTACACTAGGAGAGAAACAGCGGAGCGTTAA GTAGGAGCACTTTTTTTTTAGGCAGTAAACACGAGACGGTCGATCACAGT CTTGTTGTCTTTTCGGTTCGAGATGTTTCGTCTTTTGCCTCACAGGCGCG TGATGTGCTGCCAACGAAAGCACAGCAGCGAAAGAGGTGACTTGCGCTTC AGGTTAAAACGGGGCTCCCGCATGTGGATGATGTCGCCGTTGCGGTTTAG TGTGCTCTTTGCGCCTTCGATAGGCCTGGCGCCACCAATAGTCCGTCGCC GCATCATTTTCACCGAATTATCCGGTTTGATGCTGCTCCTCTCACAAGAG CACGGCATCTCATATGTAGTGAACGCATGCTTATGTTTTGTAGCAACAAG CGCTAGCCAGCTGGATTTGATTCTGGTGTTTCTCTGACGTGACCAACCTC CGCCGCCTCTGTTCCTCTTTCGTCGCTCTTACCGCGTGTGCGCGGGGTAA AGGTGGATATCGGGCGTAGTGGAGACGCGGTCGAAGGTCGTGAACGATGA TATTGGCGACCGGTTGGAGCTCATCGTAGATGATACCAGGGTAAGCGACT CCATTCTGGGCAAGATCAGCCCTCGGCTGGAAGAGCTGCGAGTCCCTGTG GACCAGCTCTCGGAAAGGTGAGGGAAGGAGATGATGGGGGCGCGCTCGCA AACCTTTTCTTGTGAGACCAAAGCCGATCACGCCGTCATCCATGAACCAT TATGGGCGATAAAGGGGAATCTAAGAAGACCTTCGGCAAGACCCATATGC TGCTGCGCATCACGACAATCCAACACTAAATTCTCGCTCTACATAACACT AGCGCAGGCACCCACCCCGACCATGTGTCCGCTCCCCGCTGGGTGTACGT TCGAAATCTCGTCGTTGCTCAATCCTTCGGATGCTTACTTACTTGATTTG TGAACCGATATGGTACGTATGAAGGCGTGTTTTTGGAACCGACGTACGGA GGCGTTTTTTTAAGCGTGTTTTGCATTGCCTTCAGCTTGTCGTCTGCGTT GCTGATCTCCTTGTCTTCGCCTCCGTCACCCGGTGCTGGCCGGCAGGTTG TTCGACCGCATACCGCGAATCACGCTGGACACCGTTTTTCTCGACCAGGA TCTACGTGTGTCTCGCCTTCCGGACAAAAACTTTTTGATTTACGTCAAGG ATTACTGATTTTTGAGCATCAGCGAATATGCTTACATTCGGAGGAGTGAT GGCAGACGTGGAAGGTTTGAGGGCTACATAGGGGCTCGGGATGGATGATG ACAGCTGAGCTAAGGGTGACACTGGCTGCGGTTCATATTTCGCTTTTATT CCGGGCGGGCAGACAGAAGGAAAGGGCACCTCTGTGACAAGCTTGTTACG ACTCCTCTCGTGCAAGAACGATCGGCGTGCTAGTCGTTCGGGGTGAAGGA GAGCCTTGCGACAACCCCGGCAGAGCCGTGGGCAAGAGATATCTTAACCT GACAACGTGTGTATCAGGTTTGAGTGGTTAATTTGTCGTCGTTTTCAAGA CCGATCCAGCGCGGCTAGAAAGGTTCAAGGGTTGACGCTTCATCCCGTCG TGTTTTCCTTGGCGTGCGTCAGTCAACACACCGGGAAGTAGACGTTTCGT GGAGGTGGTTCGTGCGACTACAAACTGGAAAAAATGTACAACCGCGCAGG TGGTTTCTTGGCAGCCCTCGTGGTGTCTTCCATTCATTGCGGAATCGTAA CGAAACTATGGTGACTCGTCCACTCGTACCTATGAAGGGGACGAGCGCTG GTACGGAAATAACATGCTCTACATTCATACGTGTTGTTTAGCGTGGCTTG CTGGGGGATAACGCCGTCAAGCTATGTGCACGATACAGTTTTCATCAGGT TCCATTTTACTCTGCCCTGCCGAGTCCCGCACGCACAAATACTCATCCCT CGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9654:367..4670+

>mRNA_L-elsbetiae_contig9654.18633.1 ID=mRNA_L-elsbetiae_contig9654.18633.1|Name=mRNA_L-elsbetiae_contig9654.18633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig9654:367..4670+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTCGCAGGTGTGGGCTCGGTGAGCACAGCTGATGTCGACGAGAG
CACGCTCATCAAAAACTCTCTGCTCCAGATGATGGTCGCAGGTGTGGGCT
CGGTGAGCACAGCTGATGTCGACGAGAGCACGCTCATCAAAAACTCTCTG
CTCCAGGTGGCGGCTATGACAGAGCGCGGCCAGCTGGCAACGGAGGCTCA
GCGAAACGACATGGACACGTTGGTGGAGCGCCTGGAGGACCTCAAGGCTA
GCGGTCAGCTTGGACCTTTTGAGGACGAGAACATGGTGGCGGCTATGACA
GAGCGCGGCCAGCTGGCAACGGAGGCTCAGCGAAACGACATGGACACGTT
GGTGGAGCGCCTGGAGGACCTCAAGGCTAGCGGTCAGCTTGGACCTTTTG
AGGACGAGAACATGATCGGGATATGGACGCTTGTCTACTCATCCTCCCAG
GCGTTCCGATCCAGCCCGTTCTTCGCGACGTTCCAGGCCCTCCTGGGCGG
AGAGGGGGTCGCGCAGAAGATATTCTCCCTCACCGACGCGTTCCCCAACG
CCAAGATAGGCCAGGCGCGGCAGATCATCAACGAGGGCTGCACGGAGCTC
TTGTCGCGGGTGGAGATGTCAGTCTGGCCTCACAGATCGGGATATGGACG
CTTGTCTACTCATCCTCCCAGGCGTTCCGATCCAGCCCGTTCTTCGCGAC
GTTCCAGGCCCTCCTGGGCGGAGAGGGGGTCGCGCAGAAGATATTCTCCC
TCACCGACGCGTTCCCCAACGCCAAGATAGGCCAGGCGCGGCAGATCATC
AACGAGGGCTGCACGGAGCTCTTGTCGCGGGTGGAGATGTCAGTCTGGCC
TCACAGGTGGATATCGGGCGTAGTGGAGACGCGGTCGAAGGTCGTGAACG
ATGATATTGGCGACCGGTTGGAGCTCATCGTAGATGATACCAGGGTAAGC
GACTCCATTCTGGGCAAGATCAGCCCTCGGCTGGAAGAGCTGCGAGTCCC
TGTGGACCAGCTCTCGGAAAGGTGGATATCGGGCGTAGTGGAGACGCGGT
CGAAGGTCGTGAACGATGATATTGGCGACCGGTTGGAGCTCATCGTAGAT
GATACCAGGGTAAGCGACTCCATTCTGGGCAAGATCAGCCCTCGGCTGGA
AGAGCTGCGAGTCCCTGTGGACCAGCTCTCGGAAAGGTTGTTCGACCGCA
TACCGCGAATCACGCTGGACACCGTTTTTCTCGACCAGGATCTACGTGTG
TCTCGCCTTCCGGACAAAAACTTTTTGATTTACGTCAAGGATTACTGAGT
TGTTCGACCGCATACCGCGAATCACGCTGGACACCGTTTTTCTCGACCAG
GATCTACGTGTGTCTCGCCTTCCGGACAAAAACTTTTTGATTTACGTCAA
GGATTACTGA
back to top