mRNA_L-elsbetiae_contig9651.18632.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9651.18632.1
Unique NamemRNA_L-elsbetiae_contig9651.18632.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9651.18632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9651contigL-elsbetiae_contig9651:3870..4233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size366
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.7564783-CDS-L-elsbetiae_contig9651:3869..42051622817030.7564783-CDS-L-elsbetiae_contig9651:3869..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9651 3870..4205 +
1691683995.3193245-CDS-L-elsbetiae_contig9651:3869..42051691683995.3193245-CDS-L-elsbetiae_contig9651:3869..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9651 3870..4205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.7684193-UTR-L-elsbetiae_contig9651:4205..42331622817030.7684193-UTR-L-elsbetiae_contig9651:4205..4233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9651 4206..4233 +
1691683995.3355947-UTR-L-elsbetiae_contig9651:4205..42331691683995.3355947-UTR-L-elsbetiae_contig9651:4205..4233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9651 4206..4233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9651.18632.1prot_L-elsbetiae_contig9651.18632.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9651 3870..4205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9651.18632.1

>prot_L-elsbetiae_contig9651.18632.1 ID=prot_L-elsbetiae_contig9651.18632.1|Name=mRNA_L-elsbetiae_contig9651.18632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
TTLLFRLRFGPAPPSPSRGRVCTDYTWKSCTLHLLPRLLGLTPLLPLHNL
GCSHLTPPRCRWCENDSDPLFSSAAADSSDGKQGVTCTSYPSRFLPPPTY
VPQNTARFILP*
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mRNA from alignment at L-elsbetiae_contig9651:3870..4233+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9651.18632.1 ID=mRNA_L-elsbetiae_contig9651.18632.1|Name=mRNA_L-elsbetiae_contig9651.18632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=364bp|location=Sequence derived from alignment at L-elsbetiae_contig9651:3870..4233+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACTCTCTTATTTCGTTTGAGATTCGGTCCAGCCCCTCCCTCCCCTTC
GCGAGGTCGTGTATGCACTGACTACACTTGGAAGTCGTGCACACTACACT
TGTTGCCCCGCCTCCTTGGCCTGACCCCCCTGTTGCCTCTACACAACCTC
GGTTGTTCTCATCTGACTCCACCGAGATGCCGGTGGTGTGAAAATGACAG
TGACCCCCTTTTTTCGTCTGCCGCTGCTGACAGCAGTGATGGCAAGCAAG
GCGTTACGTGCACCTCCTACCCCTCGCGCTTCCTTCCCCCTCCTACATAT
GTACCTCAAAATACTGCTCGGTTTATCTTGCCCTAGGTCCGGCCCATGGA
ACTCCACGACGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9651:3870..4233+

>mRNA_L-elsbetiae_contig9651.18632.1 ID=mRNA_L-elsbetiae_contig9651.18632.1|Name=mRNA_L-elsbetiae_contig9651.18632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig9651:3870..4233+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACTCTCTTATTTCGTTTGAGATTCGGTCCAGCCCCTCCCTCCCCTTC
GCGAGGTCGTGTATGCACTGACTACACTTGGAAGTCGTGCACACTACACT
TGTTGCCCCGCCTCCTTGGCCTGACCCCCCTGTTGCCTCTACACAACCTC
GGTTGTTCTCATCTGACTCCACCGAGATGCCGGTGGTGTGAAAATGACAG
TGACCCCCTTTTTTCGTCTGCCGCTGCTGACAGCAGTGATGGCAAGCAAG
GCGTTACGTGCACCTCCTACCCCTCGCGCTTCCTTCCCCCTCCTACATAT
GTACCTCAAAATACTGCTCGGTTTATCTTGCCCTAGACGACTCTCTTATT
TCGTTTGAGATTCGGTCCAGCCCCTCCCTCCCCTTCGCGAGGTCGTGTAT
GCACTGACTACACTTGGAAGTCGTGCACACTACACTTGTTGCCCCGCCTC
CTTGGCCTGACCCCCCTGTTGCCTCTACACAACCTCGGTTGTTCTCATCT
GACTCCACCGAGATGCCGGTGGTGTGAAAATGACAGTGACCCCCTTTTTT
CGTCTGCCGCTGCTGACAGCAGTGATGGCAAGCAAGGCGTTACGTGCACC
TCCTACCCCTCGCGCTTCCTTCCCCCTCCTACATATGTACCTCAAAATAC
TGCTCGGTTTATCTTGCCCTAG
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