mRNA_L-elsbetiae_contig965.18627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig965.18627.1
Unique NamemRNA_L-elsbetiae_contig965.18627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig965.18627.1 vs. uniprot
Match: D8LS24_ECTSI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS24_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.560e-16
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 3 
Query:  186 ALAAARSKARSELESLFLDLYPGTDAGEDGMKASRNERLSKGYQSVTLTYGEVSAIGVRCCKIFQELLFSHGGL 407
            ALAAARS+ARSELES+F  LYP     EDGMK SRNERLSKGYQS+ LTYGEVSA G     I  ++  S+GGL
Sbjct:   52 ALAAARSQARSELESVFSALYPPDLPEEDGMKTSRNERLSKGYQSIALTYGEVSATGFS--DILAKVQDSYGGL 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig965.18627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS24_ECTSI8.560e-1666.22Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig965contigL-elsbetiae_contig965:1061..2885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue4.5e-16
Seed eggNOG ortholog2880.D8LS24
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1VE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHistone H3-K79 methyltransferase
Ec32 orthologEc-08_001840.1
Exons2
Model size1198
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig965.18627.1prot_L-elsbetiae_contig965.18627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig965 1822..2820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.5318587-UTR-L-elsbetiae_contig965:1060..18211622817030.5318587-UTR-L-elsbetiae_contig965:1060..1821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 1061..1821 -
1691683995.141586-UTR-L-elsbetiae_contig965:1060..18211691683995.141586-UTR-L-elsbetiae_contig965:1060..1821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 1061..1821 -
1622817030.5719707-UTR-L-elsbetiae_contig965:2820..28851622817030.5719707-UTR-L-elsbetiae_contig965:2820..2885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 2821..2885 -
1691683995.1770475-UTR-L-elsbetiae_contig965:2820..28851691683995.1770475-UTR-L-elsbetiae_contig965:2820..2885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 2821..2885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.548484-CDS-L-elsbetiae_contig965:1821..21911622817030.548484-CDS-L-elsbetiae_contig965:1821..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 1822..2191 -
1691683995.1520095-CDS-L-elsbetiae_contig965:1821..21911691683995.1520095-CDS-L-elsbetiae_contig965:1821..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 1822..2191 -
1622817030.5614662-CDS-L-elsbetiae_contig965:2818..28201622817030.5614662-CDS-L-elsbetiae_contig965:2818..2820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 2819..2820 -
1691683995.1619847-CDS-L-elsbetiae_contig965:2818..28201691683995.1619847-CDS-L-elsbetiae_contig965:2818..2820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 2819..2820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig965.18627.1

>prot_L-elsbetiae_contig965.18627.1 ID=prot_L-elsbetiae_contig965.18627.1|Name=mRNA_L-elsbetiae_contig965.18627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MASEVAAGAINDELPTENGRHNNSDDGGIASEGVAGGPDGALAAARSKAR
SELESLFLDLYPGTDAGEDGMKASRNERLSKGYQSVTLTYGEVSAIGVRC
CKIFQELLFSHGGLHCMYESSHV*
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mRNA from alignment at L-elsbetiae_contig965:1061..2885-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig965.18627.1 ID=mRNA_L-elsbetiae_contig965.18627.1|Name=mRNA_L-elsbetiae_contig965.18627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1825bp|location=Sequence derived from alignment at L-elsbetiae_contig965:1061..2885- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGAGGCCCGTGGCAACGAGGAGAGAGTGCTGTGGGTACAAGTGTA
TTCTGTGGAACAAAAATGTGAGCTGCCGATCCTCTGAGGAGATGCTTAGT
CCTCTGTGAGGAGAAAACAGTCGCCCGCTTGTGCCGAAAATAGAGTCGGT
CGCCGTGCCTGCTCGGTGTCCAGAGAGGTTGCGGCAGACAGATACATACT
CCTATGTAGACTGCTAGCATATGTACATCTGTATGTATACGATGTACGCC
CATGCATATCTTTACGCAGAGGTTTTACGCTCAACCGGCGAGTCGTCACC
CACCCGATGCGGTATTTAGTACTAGTATTTAGTATTTAGGCCTTGCGATG
TCTCGGAATGTGCCCACGCTGTTGCTGTGGCATATACATTCTACGCAGCA
GACGACCGTAGGTGACACAAGATACCACCCTCCCCTGGACAGATTTTCAA
AGCTCGATTACTCCGTAACGAAGAGGTTGCCAGCACCAAACCGCACATTT
TCGGACAGCCCTCGACTAGATATTTCCAACCGCACCCCCTTTCGGCACTG
ACACTCTTCTTGCTGGGGAATATTCGAGCTTTGAAAGTCTGTCCAGGGGG
GGGGGGGTGGTATCTTGTGCCACCTACGGTAGATAGATGATAGATGAGTA
GATAGAACTCCAATGAACAAAAACACTTGCGTTTGTGGTGGCAGGGCATC
GGAGGTAGCAGCTGGAGCTATCAACGACGAACTTCCCACCGAAAATGGTC
GGCACAACAACAGCGATGATGGTGGCATAGCTTCGGAAGGCGTCGCAGGG
GGGCCAGACGGGGCTCTGGCTGCGGCGAGGAGCAAGGCTAGGTCGGAGCT
CGAGTCCCTGTTTTTAGATCTGTACCCAGGGACAGATGCTGGGGAGGACG
GCATGAAGGCGTCCCGGAATGAGAGACTGTCAAAGGGGTACCAGAGTGTC
ACCCTCACGTATGGAGAGGTGTCTGCAATAGGGGTGAGGTGTTGTAAAAT
TTTCCAAGAATTGCTGTTTTCGCACGGCGGTCTCCATTGTATGTACGAGT
CATCACATGTGTAACGCGCAAGGGTGCATAGAAAAATCAGTACAGAAACT
GGCATCCTGGCTAGATTGAGTTTTCCCTGGGTGCAAGGCCTGTGGGCCTG
TCGGTCAAGCCACGCACTGGGACCAGGCTTTTCAGGAGATTTTTCAGGCT
GGCGACGCACGTGGCGACGTACGCCAGTTCTGGTCTTCAGTGCCACACGG
GAACTCCTAGTGTTGAGCAACTCGAACAGCAGTCAACAAGTACCAGGTTC
TTGACAGCTAGCTGTTCTTGTCTGGCTGTTGTGCTCTGCGTTTTATTTGT
GACGATGGCAAACACACACACACGCAGAGGCCAGCGCAGCATTTTTGCGC
CGGTCCTTTTGTTTCTTCCCCCGGTGTTGACTATTTCGAACATCGTTGAA
GACGCTCGAAGTCGGGAAGAAAAGACATGCATAACTTGCTTCACCCCCTG
AAGTGTTCCATTCACGAGCAACGTCTGAAAGGGGAATTTGTACATACATT
GTTAGATGTTTGTCAAATAGTGGAGATCATCGGTGTAGACTGTCATGGGG
TAGATTGTTTGGGGATGAAGAGCCAAGACCAAGCCTCAATAATCTAGACC
AATCTTGTTCCACACGTCTGCTCTCGACTTTGGAGGTCGAATGGGGGGTC
AAAATCTAGAGCAAATCTAGAGCAGCGTGTTGCTCCGCGCTGCCCTACAT
TTTATAACAGCAACAAACCTGTCCGTTTTTCATCGACCAATCCCCGAGTG
CAACCCGAGTTCAGAACGTATCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig965:1061..2885-

>mRNA_L-elsbetiae_contig965.18627.1 ID=mRNA_L-elsbetiae_contig965.18627.1|Name=mRNA_L-elsbetiae_contig965.18627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig965:1061..2885- (Laminarionema elsbetiae ELsaHSoW15)
ATATGGCATCGGAGGTAGCAGCTGGAGCTATCAACGACGAACTTCCCACC
GAAAATGGTCGGCACAACAACAGCGATGATGGTGGCATAGCTTCGGAAGG
CGTCGCAGGGGGGCCAGACGGGGCTCTGGCTGCGGCGAGGAGCAAGGCTA
GGTCGGAGCTCGAGTCCCTGTTTTTAGATCTGTACCCAGGGACAGATGCT
GGGGAGGACGGCATGAAGGCGTCCCGGAATGAGAGACTGTCAAAGGGGTA
CCAGAGTGTCACCCTCACGTATGGAGAGGTGTCTGCAATAGGGGTGAGGT
GTTGTAAAATTTTCCAAGAATTGCTGTTTTCGCACGGCGGTCTCCATTGT
ATGTACGAGTCATCACATGTGTAAGGCATCGGAGGTAGCAGCTGGAGCTA
TCAACGACGAACTTCCCACCGAAAATGGTCGGCACAACAACAGCGATGAT
GGTGGCATAGCTTCGGAAGGCGTCGCAGGGGGGCCAGACGGGGCTCTGGC
TGCGGCGAGGAGCAAGGCTAGGTCGGAGCTCGAGTCCCTGTTTTTAGATC
TGTACCCAGGGACAGATGCTGGGGAGGACGGCATGAAGGCGTCCCGGAAT
GAGAGACTGTCAAAGGGGTACCAGAGTGTCACCCTCACGTATGGAGAGGT
GTCTGCAATAGGGGTGAGGTGTTGTAAAATTTTCCAAGAATTGCTGTTTT
CGCACGGCGGTCTCCATTGTATGTACGAGTCATCACATGTGTAA
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