mRNA_L-elsbetiae_contig9643.18623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9643.18623.1
Unique NamemRNA_L-elsbetiae_contig9643.18623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9643.18623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9643contigL-elsbetiae_contig9643:6244..6858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.1924543-CDS-L-elsbetiae_contig9643:6243..68581622817030.1924543-CDS-L-elsbetiae_contig9643:6243..6858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9643 6244..6858 +
1691683994.9065568-CDS-L-elsbetiae_contig9643:6243..68581691683994.9065568-CDS-L-elsbetiae_contig9643:6243..6858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9643 6244..6858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9643.18623.1prot_L-elsbetiae_contig9643.18623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9643 6244..6858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9643.18623.1

>prot_L-elsbetiae_contig9643.18623.1 ID=prot_L-elsbetiae_contig9643.18623.1|Name=mRNA_L-elsbetiae_contig9643.18623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
PPSVPREAAKQHAWLRQLRLYLANGRLEYTLSVDSTIGPVCVIGTPRSEL
LQTHSLNIFEDHTRAYSLISGSVANSVIDEKLQSCQSVADAWSILETWVV
LPVTPAQKHLLEKQFNNVRFVPGADPKMYFEGFDVVINRMSAVGIHKSPQ
QLVDAMIRQLPDDFSVERAILQNQRGLTRLDVQTTIGNAYVERTAREIVQ
TKQPD
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mRNA from alignment at L-elsbetiae_contig9643:6244..6858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9643.18623.1 ID=mRNA_L-elsbetiae_contig9643.18623.1|Name=mRNA_L-elsbetiae_contig9643.18623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=615bp|location=Sequence derived from alignment at L-elsbetiae_contig9643:6244..6858+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCTAGTGTTCCCCGTGAGGCAGCGAAGCAACATGCTTGGTTGAGGCA
ACTGCGCCTATACCTCGCCAACGGGAGACTGGAGTACACTCTTTCGGTGG
ACTCAACTATTGGGCCCGTGTGTGTGATCGGAACCCCGCGATCCGAACTG
CTCCAAACGCATTCCCTGAACATTTTCGAGGATCACACACGGGCGTACAG
TTTGATTTCTGGATCGGTCGCCAATTCGGTCATCGACGAGAAATTGCAGT
CGTGTCAATCTGTTGCGGATGCTTGGTCTATTCTGGAGACGTGGGTGGTG
TTGCCTGTCACCCCTGCCCAAAAGCACCTACTCGAGAAGCAATTCAACAA
CGTTCGCTTCGTGCCGGGCGCTGACCCCAAAATGTACTTTGAGGGGTTTG
ATGTGGTCATCAACCGAATGTCGGCAGTTGGTATCCACAAGTCCCCGCAG
CAGCTTGTTGACGCCATGATACGACAGCTTCCTGATGATTTTTCCGTGGA
GAGGGCCATTCTCCAAAACCAGCGGGGCCTTACTCGACTTGATGTCCAGA
CCACTATCGGCAACGCGTATGTCGAGCGAACCGCACGGGAGATTGTTCAA
ACCAAGCAGCCTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9643:6244..6858+

>mRNA_L-elsbetiae_contig9643.18623.1 ID=mRNA_L-elsbetiae_contig9643.18623.1|Name=mRNA_L-elsbetiae_contig9643.18623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig9643:6244..6858+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCTAGTGTTCCCCGTGAGGCAGCGAAGCAACATGCTTGGTTGAGGCA
ACTGCGCCTATACCTCGCCAACGGGAGACTGGAGTACACTCTTTCGGTGG
ACTCAACTATTGGGCCCGTGTGTGTGATCGGAACCCCGCGATCCGAACTG
CTCCAAACGCATTCCCTGAACATTTTCGAGGATCACACACGGGCGTACAG
TTTGATTTCTGGATCGGTCGCCAATTCGGTCATCGACGAGAAATTGCAGT
CGTGTCAATCTGTTGCGGATGCTTGGTCTATTCTGGAGACGTGGGTGGTG
TTGCCTGTCACCCCTGCCCAAAAGCACCTACTCGAGAAGCAATTCAACAA
CGTTCGCTTCGTGCCGGGCGCTGACCCCAAAATGTACTTTGAGGGGTTTG
ATGTGGTCATCAACCGAATGTCGGCAGTTGGTATCCACAAGTCCCCGCAG
CAGCTTGTTGACGCCATGATACGACAGCTTCCTGATGATTTTTCCGTGGA
GAGGGCCATTCTCCAAAACCAGCGGGGCCTTACTCGACTTGATGTCCAGA
CCACTATCGGCAACGCGTATGTCGAGCGAACCGCACGGGAGATTGTTCAA
ACCAAGCAGCCTGACCCGCCTAGTGTTCCCCGTGAGGCAGCGAAGCAACA
TGCTTGGTTGAGGCAACTGCGCCTATACCTCGCCAACGGGAGACTGGAGT
ACACTCTTTCGGTGGACTCAACTATTGGGCCCGTGTGTGTGATCGGAACC
CCGCGATCCGAACTGCTCCAAACGCATTCCCTGAACATTTTCGAGGATCA
CACACGGGCGTACAGTTTGATTTCTGGATCGGTCGCCAATTCGGTCATCG
ACGAGAAATTGCAGTCGTGTCAATCTGTTGCGGATGCTTGGTCTATTCTG
GAGACGTGGGTGGTGTTGCCTGTCACCCCTGCCCAAAAGCACCTACTCGA
GAAGCAATTCAACAACGTTCGCTTCGTGCCGGGCGCTGACCCCAAAATGT
ACTTTGAGGGGTTTGATGTGGTCATCAACCGAATGTCGGCAGTTGGTATC
CACAAGTCCCCGCAGCAGCTTGTTGACGCCATGATACGACAGCTTCCTGA
TGATTTTTCCGTGGAGAGGGCCATTCTCCAAAACCAGCGGGGCCTTACTC
GACTTGATGTCCAGACCACTATCGGCAACGCGTATGTCGAGCGAACCGCA
CGGGAGATTGTTCAAACCAAGCAGCCTGAC
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