mRNA_L-elsbetiae_contig9640.18621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9640.18621.1
Unique NamemRNA_L-elsbetiae_contig9640.18621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 6.530e-90
Identity = 156/183 (85.25%), Postives = 160/183 (87.43%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPKECLQFQQQQQQG-----------QDRGDPKARAATKAPGVLGDATNAMRGAEV 516
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPKECLQ QQ                +++G  KAR A KAPGVLGD TNAMRG E+
Sbjct: 1262 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPKECLQQQQXXXXXXXXXXXXXXXXEEKGGAKARTALKAPGVLGDPTNAMRGTEM 1444          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S0AC05_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AC05_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.350e-82
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKT+N TKSVTI+PK
Sbjct:    7 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTNNCTKSVTIDPK 136          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S0C203_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C203_9STRA)

HSP 1 Score: 252 bits (644), Expect = 3.180e-82
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKT+N TKS+TINP+
Sbjct:  106 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTNNCTKSITINPR 235          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S0PHH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHH8_9STRA)

HSP 1 Score: 249 bits (635), Expect = 4.720e-82
Identity = 123/130 (94.62%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELELVDSLDPFSEG+VFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQF+IISLRNNMFELADRLVGIYKT++ TKSVTINP+
Sbjct:   16 QMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFVIISLRNNMFELADRLVGIYKTNDCTKSVTINPR 145          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S3GXG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXG2_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.190e-81
Identity = 122/130 (93.85%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELEL+DSLDPFSEGIVFSVRPP+KSWKNI+NLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALDFKNVSIVANYIK+RTK+AQFIIISLRNNMFELADRLVGIYKTH+ TKSVTINPK
Sbjct:   21 QMITLGGDAELELLDSLDPFSEGIVFSVRPPRKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKDRTKDAQFIIISLRNNMFELADRLVGIYKTHDATKSVTINPK 150          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S1ZB93_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB93_TRICV)

HSP 1 Score: 249 bits (637), Expect = 1.030e-80
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKT+N TKSVTI+P+
Sbjct:  149 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTNNCTKSVTIDPR 278          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: UPI00077A7825 (structural maintenance of chromosomes protein 4-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7825)

HSP 1 Score: 244 bits (624), Expect = 1.350e-80
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINP 387
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI+NLSGGEKTLSSLALVFALHH+KPTP YVMDEIDAALDF+NVSIVANYIKERTKNAQF+IISLRNNMFELADRLVGI+KT N TKSVTINP
Sbjct:   25 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPFYVMDEIDAALDFRNVSIVANYIKERTKNAQFVIISLRNNMFELADRLVGIFKTDNCTKSVTINP 153          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S0RTU6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RTU6_9CHLO)

HSP 1 Score: 244 bits (622), Expect = 4.070e-80
Identity = 130/160 (81.25%), Postives = 136/160 (85.00%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPKECLQFQQQQQQGQDRGD---PKARAATKAP 471
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI NLSGGEKTLSSL+LVFALHH+KPTPLYVMDEIDAALDFKNVSIVA+YIKERTKNAQF+IISLRNNMFELADRLVGIYKT N TKS+ INP          Q G D  +   PKA  A KAP
Sbjct:   10 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNICNLSGGEKTLSSLSLVFALHHYKPTPLYVMDEIDAALDFKNVSIVAHYIKERTKNAQFVIISLRNNMFELADRLVGIYKTDNTTKSIAINPGRF-------QVGADATNTAAPKALPAGKAP 162          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: F0YFH8_AURAN (SMC_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFH8_AURAN)

HSP 1 Score: 243 bits (620), Expect = 5.660e-80
Identity = 128/166 (77.11%), Postives = 139/166 (83.73%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPKECLQFQQQQQQGQDRGDPKARAATKAPGVLGDATNA 498
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALD+KNVSI+ANYIK+R ++AQF+IISLRNNMFELADRL G+YKTHNVTK++TI+P        Q           ARA   AP  L DATNA
Sbjct:    3 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDYKNVSIIANYIKDRCRSAQFVIISLRNNMFELADRLTGVYKTHNVTKTITISPDAFAATLAQ-----------ARAPA-APSPLRDATNA 156          
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Match: A0A7S3PBM4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBM4_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.240e-79
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 1
Query:    1 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELADRLVGIYKTHNVTKSVTINPK 390
            QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNI+NLSGGEKTLSSLALVFALHH+KPTPLYVMDEIDAALDFKNVSIVANYIKERT+NAQF+IISLRNNMFELADRLVGIYKT N TKSVTINP+
Sbjct:  141 QMITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTRNAQFVIISLRNNMFELADRLVGIYKTDNCTKSVTINPR 270          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9640.18621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI6.530e-9085.25Structural maintenance of chromosomes protein n=2 ... [more]
A0A7S0AC05_9STRA1.350e-8296.92Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S0C203_9STRA3.180e-8296.92Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0PHH8_9STRA4.720e-8294.62Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3GXG2_9STRA2.190e-8193.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1ZB93_TRICV1.030e-8096.15Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
UPI00077A78251.350e-8093.80structural maintenance of chromosomes protein 4-li... [more]
A0A7S0RTU6_9CHLO4.070e-8081.25Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
F0YFH8_AURAN5.660e-8077.11SMC_N domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S3PBM4_9STRA1.240e-7994.62Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9640contigL-elsbetiae_contig9640:4211..6928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue4.9e-77
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
KEGG koko:K06675
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons4
Model size519
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9640.18621.1prot_L-elsbetiae_contig9640.18621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9640 4211..6925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.0522492-CDS-L-elsbetiae_contig9640:4210..42641622817030.0522492-CDS-L-elsbetiae_contig9640:4210..4264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 4211..4264 -
1691683994.805511-CDS-L-elsbetiae_contig9640:4210..42641691683994.805511-CDS-L-elsbetiae_contig9640:4210..4264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 4211..4264 -
1622817030.06381-CDS-L-elsbetiae_contig9640:4624..47901622817030.06381-CDS-L-elsbetiae_contig9640:4624..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 4625..4790 -
1691683994.8172-CDS-L-elsbetiae_contig9640:4624..47901691683994.8172-CDS-L-elsbetiae_contig9640:4624..4790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 4625..4790 -
1622817030.074846-CDS-L-elsbetiae_contig9640:5455..55711622817030.074846-CDS-L-elsbetiae_contig9640:5455..5571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 5456..5571 -
1691683994.8273597-CDS-L-elsbetiae_contig9640:5455..55711691683994.8273597-CDS-L-elsbetiae_contig9640:5455..5571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 5456..5571 -
1622817030.0869894-CDS-L-elsbetiae_contig9640:6745..69251622817030.0869894-CDS-L-elsbetiae_contig9640:6745..6925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 6746..6925 -
1691683994.8379211-CDS-L-elsbetiae_contig9640:6745..69251691683994.8379211-CDS-L-elsbetiae_contig9640:6745..6925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9640 6746..6925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.0971437-UTR-L-elsbetiae_contig9640:6925..69281622817030.0971437-UTR-L-elsbetiae_contig9640:6925..6928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9640 6926..6928 -
1691683994.8487234-UTR-L-elsbetiae_contig9640:6925..69281691683994.8487234-UTR-L-elsbetiae_contig9640:6925..6928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9640 6926..6928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9640.18621.1

>prot_L-elsbetiae_contig9640.18621.1 ID=prot_L-elsbetiae_contig9640.18621.1|Name=mRNA_L-elsbetiae_contig9640.18621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MITLGGDAELELVDSLDPFSEGIVFSVRPPKKSWKNIANLSGGEKTLSSL
ALVFALHHFKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISL
RNNMFELADRLVGIYKTHNVTKSVTINPKECLQFQQQQQQGQDRGDPKAR
AATKAPGVLGDATNAMRGAEV*
back to top

mRNA from alignment at L-elsbetiae_contig9640:4211..6928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9640.18621.1 ID=mRNA_L-elsbetiae_contig9640.18621.1|Name=mRNA_L-elsbetiae_contig9640.18621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2718bp|location=Sequence derived from alignment at L-elsbetiae_contig9640:4211..6928- (Laminarionema elsbetiae ELsaHSoW15)
CAGATGATCACTCTGGGTGGCGACGCGGAGCTGGAGCTCGTGGACTCGCT CGACCCGTTCAGCGAGGGCATCGTGTTCAGCGTGCGCCCCCCCAAGAAGT CCTGGAAGAACATCGCCAACCTCTCCGGCGGGGAGAAGACGCTGTCCTCC CTCGCCCTGGTCTTCGCGCTGCACCACTTCAAGGTGCGGTGCGCTTGCTA TCTCTTCTTGTCGCTTAAATATATCTACCTATACCCGAGAACCCAGGACG CCGCCGGCCCGGCCGCTTCGTGGGTCGTCCGCTTGCCTCCTCCCCCCTGC CTGTCCTGCTCCTTTTTTTTTTTTTTTTGCGTCTGGTGCTTTTTGCTCGA ATATGTGTGTAGAAGTATGTATGTATGTATGTAGCCCCACGCTCTCGCGA TGCCGGGTTGATTTGTACCATACATGCGTGCGGCGGCTCCCGTGTCTTGT GTGTCGGTTTCTCGGGGGTTGTCCCTGCCGCGTTTGGACAGATGCTTTTC TACTTATAGCAATATCAGGAAATATTAAAATTTCTAATTTACCTTCTCGC TTTATAACTTTACGTTTAACGTTTTGTCGTGCTGCTTGTATTTGTTTACC GTTTAAAAATCCGGATCCCATAGCAACCAAGACAAAACAATTTGGACTGG CCTAGTTTTTGTAGAGTTTGCCTCTACCCGTGCATTTGCAACTTTTTCCT GCGCGGGGGGGAATGAGTCCTTGCTTTTGTTTATCGTCGGGGCACAACCG AGGCGAAACAATGGTTGCTATTATTGCGTTCTCGCCGGTGAGACTTGGGG GAGGTTTTCGGGCGGGGGCGACGACAGCAGCAGCTGGGCGAAGCGAACCA CTCTGAACATTTGCCGATACGCTGTGTACGATAAATGCGAGCGGGGTGTT CTTCTGTTTCGTTGTGTTATTTTCCTCCAGAAACATCGGCGAATTGCCTT CCGAACGCACACACACGCATACACACACACACGGGCACTTCATATTTAGT TGTCGGCTCTCGGAAAGGATGCTGCAGTGTCCGTTCAGTGCACGAGAGCA GACCCCACCGAGATTGTTTGCTTTGCTTGCCTGCCTGCCACCTCTACTAC TATTGCACAGCAGTGCGGGGCGGTGGTGATGGATGCACGCACCGATGCGC CCTTCCTCTCTTACGAGACGTTTTGTCCGCAAGCGGCGTTATCCTCCGAG CCTGGTGGCCGCTCAACGTCCGACAACAACCGCCCACAGAGTAGTGGCAA TTTACAATGTAGCGCGTCGTTGAGTCGGTTTCCTGTTGGACGTTGCCCTC GAGCTTTTGGTGAAACGGTTGTCTGTGCATGCTGCTGTTTTCTTGGCGTG CGTGCAGCCGACGCCGCTGTACGTGATGGACGAGATCGATGCGGCCCTCG ACTTCAAGAACGTGTCGATCGTGGCGAACTACATCAAGGAGCGCACCAAG AACGCCCAGTTCATCATCATCAGGTACCGTATACGACACAAGATAACACA CCCCGTGGACCAGTTTTCAAAGCTCAAAAGTACTCGACAGCGCCAAGATG AGTGTCGGTCCCGAAAAGGGCGGCGGCGTTGGAAATATGTCATCAAGAGC TGCCCGAAAACGTGTCGTCAAGTATTATAAATCATACTCGTTGCGGAGTA ACCGAGCTTTGAAAATCGTTCCAGGGGGTGTGTTTATCTTGTGTCCTGTA CGGTACACACCCCGTCGTCGACCGCTATTAAGTTTGCATGTGTTGCCCAC GTTTCGACGTGAAACGGCCATCTCGTATGTATGAGCATGCCATGGGTTTT TATCTTGTGGGTGGCATCAGCTTTGTAGTTGTTGGTGCTACAAGTTGGAT TTCTCTCAATATTTTCTGCAGGAATCGGACCGTTTGTAAATAGCTTGTTG CTTGCCGCAAAGAGCCTGCATCGTCTGGCGACCTCGAAACATCCCTAAAT GTCTGGACTCACAAAGCGTCCATCATTCGCGTACAAGTATTGCGTTTCGC TATTTCGCCGCCCTTCTCCCTAACCCCCAGATCCCGGCCCCCCCTCCCCC CCCCGACGCGTTCCTGTCCCTGTAACCCCCCCCCGCCGGCCGTTTCCGTG GACACACCGACAAAATACCGCCGACCGGCTCTCCACAGCCTCCGCAACAA CATGTTCGAGCTAGCCGATCGCCTTGTTGGCATCTATAAAACCCACAACG TCACCAAGAGTGTCACGATCAACCCCAAGGAGTGCCTCCAGTTCCAGCAG CAGCAGCAGCAAGGCCAAGACCGGGGTGACCCAAAGGCGCGCGCTGCTAC CAAGGTGGGACGCCGTATATAAGTGGTGTGGCCGTAAAATGGACGTTTTC TGCGTGGGTAGGAGCATCGCGTGCGTGCCATGTGATACATAACACGAGGC GTTGTGGTGCGCTGTTGGGAGTGATATCACGGCGCCACTTAATACCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCGCCCCCCCCGCCGGCCGANNNNNNNNATAACGCGAGCGTGG GTGTTGCGGTGTTGGGCTTTATTTCACGGGCCCCCTTAATACCCCCCCCC CCCTCCCCCCCCCTCCCCCTTGTTTCCACTCCCCCGCCCCTGTCCTCTCT GGCTTGCCATGTAGGCGCCGGGTGTCCTGGGCGACGCCACAAACGCCATG CGTGGCGCGGAAGTATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9640:4211..6928-

>mRNA_L-elsbetiae_contig9640.18621.1 ID=mRNA_L-elsbetiae_contig9640.18621.1|Name=mRNA_L-elsbetiae_contig9640.18621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig9640:4211..6928- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACTCTGGGTGGCGACGCGGAGCTGGAGCTCGTGGACTCGCTCGA
CCCGTTCAGCGAGGGCATCGTGTTCAGCGTGCGCCCCCCCAAGAAGTCCT
GGAAGAACATCGCCAACCTCTCCGGCGGGGAGAAGACGCTGTCCTCCCTC
GCCCTGGTCTTCGCGCTGCACCACTTCAAGATGATCACTCTGGGTGGCGA
CGCGGAGCTGGAGCTCGTGGACTCGCTCGACCCGTTCAGCGAGGGCATCG
TGTTCAGCGTGCGCCCCCCCAAGAAGTCCTGGAAGAACATCGCCAACCTC
TCCGGCGGGGAGAAGACGCTGTCCTCCCTCGCCCTGGTCTTCGCGCTGCA
CCACTTCAAGCCGACGCCGCTGTACGTGATGGACGAGATCGATGCGGCCC
TCGACTTCAAGAACGTGTCGATCGTGGCGAACTACATCAAGGAGCGCACC
AAGAACGCCCAGTTCATCATCATCAGCCGACGCCGCTGTACGTGATGGAC
GAGATCGATGCGGCCCTCGACTTCAAGAACGTGTCGATCGTGGCGAACTA
CATCAAGGAGCGCACCAAGAACGCCCAGTTCATCATCATCAGCCTCCGCA
ACAACATGTTCGAGCTAGCCGATCGCCTTGTTGGCATCTATAAAACCCAC
AACGTCACCAAGAGTGTCACGATCAACCCCAAGGAGTGCCTCCAGTTCCA
GCAGCAGCAGCAGCAAGGCCAAGACCGGGGTGACCCAAAGGCGCGCGCTG
CTACCAAGCCTCCGCAACAACATGTTCGAGCTAGCCGATCGCCTTGTTGG
CATCTATAAAACCCACAACGTCACCAAGAGTGTCACGATCAACCCCAAGG
AGTGCCTCCAGTTCCAGCAGCAGCAGCAGCAAGGCCAAGACCGGGGTGAC
CCAAAGGCGCGCGCTGCTACCAAGGCGCCGGGTGTCCTGGGCGACGCCAC
AAACGCCATGCGTGGCGCGGAAGTATAAGCGCCGGGTGTCCTGGGCGACG
CCACAAACGCCATGCGTGGCGCGGAAGTATAA
back to top