mRNA_L-elsbetiae_contig964.18620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig964.18620.1
Unique NamemRNA_L-elsbetiae_contig964.18620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig964.18620.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.870e-32
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:   16 SSTARLGGGKAASGKRGDGANKREDQTFAEVVRDSLKRIEARRTNSQKIEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEA 324
            S++AR  GG  A+G        RE+QTFAE  R  L+R E RR   +++EEDGGAF  NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EA
Sbjct: 1049 SASARRVGGNGAAGS----IKNREEQTFAEAARGILRRAEERRMKVERVEEDGGAFSANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREA 1147
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BLAST of mRNA_L-elsbetiae_contig964.18620.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 5.240e-32
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:   94 TFAEVVRDSLKRIEARRTNSQKIEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRQEA 324
            TFAE VRD L+R E RR   +++EEDGGAFP NPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKR+EA
Sbjct:  884 TFAEAVRDILRRAEERRKRVERVEEDGGAFPANPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRERRLKRREA 960
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig964.18620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L195_9PHAE3.870e-3268.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LKT0_ECTSI5.240e-3283.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig964contigL-elsbetiae_contig964:25883..27281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2880.D8LKT0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig964.18620.1prot_L-elsbetiae_contig964.18620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig964 25884..27281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.8320413-CDS-L-elsbetiae_contig964:25883..259861622817029.8320413-CDS-L-elsbetiae_contig964:25883..25986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 25884..25986 -
1691683994.6331804-CDS-L-elsbetiae_contig964:25883..259861691683994.6331804-CDS-L-elsbetiae_contig964:25883..25986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 25884..25986 -
1622817029.8453074-CDS-L-elsbetiae_contig964:26515..266531622817029.8453074-CDS-L-elsbetiae_contig964:26515..26653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 26516..26653 -
1691683994.647218-CDS-L-elsbetiae_contig964:26515..266531691683994.647218-CDS-L-elsbetiae_contig964:26515..26653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 26516..26653 -
1622817029.8569186-CDS-L-elsbetiae_contig964:27198..272811622817029.8569186-CDS-L-elsbetiae_contig964:27198..27281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 27199..27281 -
1691683994.658417-CDS-L-elsbetiae_contig964:27198..272811691683994.658417-CDS-L-elsbetiae_contig964:27198..27281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig964 27199..27281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig964.18620.1

>prot_L-elsbetiae_contig964.18620.1 ID=prot_L-elsbetiae_contig964.18620.1|Name=mRNA_L-elsbetiae_contig964.18620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
RKQGGSSTARLGGGKAASGKRGDGANKREDQTFAEVVRDSLKRIEARRTN
SQKIEEDGGAFPGNPRHPVGWVGTFTETFTHAERKEEALKRRAGEARSRE
RRLKRQEA
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mRNA from alignment at L-elsbetiae_contig964:25883..27281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig964.18620.1 ID=mRNA_L-elsbetiae_contig964.18620.1|Name=mRNA_L-elsbetiae_contig964.18620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1399bp|location=Sequence derived from alignment at L-elsbetiae_contig964:25883..27281- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCAGGGCGGCAGCTCCACCGCTCGCCTTGGCGGCGGGAAGGCGGC
GTCGGGTAAACGGGGCGATGGTGCAAATAAAAGGTGTGCATGTGTGTGCG
TGTGTGTGTTGGCGTTTTTGTTGCTATTTTGTGGGGCTGCGGGTTATCGC
GACGACGCTGAGGGTTCTGGTACATAGCGGTAGGGGGCACAGCAAGGAGG
GGACGAAACGTACGTGATGTCTGTATAGTGATCTTGCAATGACGCCCCCC
CCCCCCCCCCCCCCCTTATATACGTGCCCCCTGGTTGTCGCGCGTGCTTA
GCTGCGTGTGATGCGTGACCCAGAAAGGTTCACCTAGGTACCCCCCGAAC
GTACAAAGGGTCGGGTGAACACGTAAACACCCGTCTGCGCGATTCCGGGT
ACCTTTTTCACTTCTTCTTCGGAGGGTCCGCGCGTCCCGCCCGCGTCCGC
GCACGTGCGTGCACACGGGACACGCGCGCACAAATGTAACCGTTTCACGA
ACCGCTTTGTTGCTTTGCCACCGGCTGCTCGAATCTGAACTAAAACAATC
GAAAGAAACCCCAAGACGCTGTTTTTTTTGTTTTTTTTCACGGGGGCATC
TGTGTTTACATCTGCTCTCACGTTGCAGGGAGGACCAGACCTTTGCCGAG
GTAGTGCGGGACAGCCTGAAACGGATAGAGGCGAGACGCACCAACAGCCA
GAAGATCGAAGAGGACGGCGGCGCGTTCCCCGGCAATCCGCGGCACCCCG
TCGGCTGGGTCGGAACGTGAGAGAGAGACCCCCCCGGGCCGAAATGCGAC
CGTCTGACTCGACACCACGCGGATAACCGAACGTCTCGGCAACATTCAAG
ACATTAGTACACAGCAGTAATGGCAGGAGTGGTGACAGCAGGAGCAGCAG
CAGCAGCAGCAGTAGCAGCGGCAGCAGCGGCAAACAGTGGTCTCACACGT
CCGGGGTTGTCTACGTATAAATACCCGTTCGTTCTCCTCTTTAGTTGTTG
CACTTTTGTTGTTGTGGTTTTGGGCGTCCGTCCGCCCCCTGTGGAGCACC
TTTTTTCGGCCGCACCTCCGCCATCGAAAACGGTGGCCGTCGGGGGACTA
ACCCCTGCCTCCACCGCGGATCATATTGTCTTCTTCTTTCTTCTTCTTCC
TCTGATTTGTATTTGTGCTGATGGTGTGTGTTCACATCACCAAACGCTCA
ACCGAATCTTCCGACACGCACGCACGCGCGCACGCACGCACGCACGCACG
CATGCACGTACGCACGCGCGGCGTGCGGCCCCCCACCAAAAACAGGTTCA
CGGAGACGTTCACCCACGCAGAGCGGAAGGAAGAGGCCCTCAAGCGCCGC
GCCGGAGAAGCGAGGTCCCGAGAGCGCCGGCTGAAGCGCCAGGAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig964:25883..27281-

>mRNA_L-elsbetiae_contig964.18620.1 ID=mRNA_L-elsbetiae_contig964.18620.1|Name=mRNA_L-elsbetiae_contig964.18620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig964:25883..27281- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCAGGGCGGCAGCTCCACCGCTCGCCTTGGCGGCGGGAAGGCGGC
GTCGGGTAAACGGGGCGATGGTGCAAATAAAAGCGCAAGCAGGGCGGCAG
CTCCACCGCTCGCCTTGGCGGCGGGAAGGCGGCGTCGGGTAAACGGGGCG
ATGGTGCAAATAAAAGGGAGGACCAGACCTTTGCCGAGGTAGTGCGGGAC
AGCCTGAAACGGATAGAGGCGAGACGCACCAACAGCCAGAAGATCGAAGA
GGACGGCGGCGCGTTCCCCGGCAATCCGCGGCACCCCGTCGGCTGGGTCG
GAACGGAGGACCAGACCTTTGCCGAGGTAGTGCGGGACAGCCTGAAACGG
ATAGAGGCGAGACGCACCAACAGCCAGAAGATCGAAGAGGACGGCGGCGC
GTTCCCCGGCAATCCGCGGCACCCCGTCGGCTGGGTCGGAACGTTCACGG
AGACGTTCACCCACGCAGAGCGGAAGGAAGAGGCCCTCAAGCGCCGCGCC
GGAGAAGCGAGGTCCCGAGAGCGCCGGCTGAAGCGCCAGGAGGCGGTTCA
CGGAGACGTTCACCCACGCAGAGCGGAAGGAAGAGGCCCTCAAGCGCCGC
GCCGGAGAAGCGAGGTCCCGAGAGCGCCGGCTGAAGCGCCAGGAGGCG
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