mRNA_L-elsbetiae_contig9636.18614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9636.18614.1
Unique NamemRNA_L-elsbetiae_contig9636.18614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9636.18614.1 vs. uniprot
Match: D7G830_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G830_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 8.160e-55
Identity = 133/261 (50.96%), Postives = 154/261 (59.00%), Query Frame = 1 
Query:  496 GAKSAAFAPAPVCSAGDVEPLALAKELGVQSIVDRITRAIIQDGRAAGEAGAXXXXXXXXAIAASPGVTTATNTGVRGDHNGDQYRPQLSPP--PPANQGQQPQRAITDKPWGSGAIGSSPSSRPPGSSSMRMGRPKEDIERLRRVVRDTMSSPQLSPPSSPSLSLYGGIGLAGGEHFGTQPPQWSQKHEACLADMRRRLRETGSPLLGAKDPAVLLGALLRRKGPLIRLLDEAVLSLEDTAEALNGLVSVSTRLMIAGVR 1272
            GA +AAF P  VCS   VEPLALAKELGVQ+IV+RIT+ I+ +GR     G          +  S  VT  T   +      ++ R  LS P  P                                  S +  RP ED+ERLRRVVRD MSS Q SP S   LS  GG    G EH GT  PQWSQKHEACL++MRR+LRET SPLL AKDPAVL+ ALLRR+G +IR LD+AVLSLEDTAEALN LVSVS+RL +AGVR
Sbjct:    3 GAPTAAFEPPVVCSVVGVEPLALAKELGVQAIVERITQTIVCNGRVTRPGGDGGGNTGERGLERSLDVTVTTFENLH-----ERRRRPLSCPSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNKPKRPNEDVERLRRVVRDAMSSTQPSPSSL--LSPNGGFSSEGREHGGTHHPQWSQKHEACLSEMRRKLRETCSPLLRAKDPAVLVAALLRRQGAVIRQLDDAVLSLEDTAEALNALVSVSSRLRMAGVR 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9636.18614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G830_ECTSI8.160e-5550.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9636contigL-elsbetiae_contig9636:4830..7609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1275
Cds size1275
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9636.18614.1prot_L-elsbetiae_contig9636.18614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9636 4830..7609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.40486-CDS-L-elsbetiae_contig9636:4829..51141622817029.40486-CDS-L-elsbetiae_contig9636:4829..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 4830..5114 +
1691683994.3279893-CDS-L-elsbetiae_contig9636:4829..51141691683994.3279893-CDS-L-elsbetiae_contig9636:4829..5114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 4830..5114 +
1622817029.4159548-CDS-L-elsbetiae_contig9636:5689..60451622817029.4159548-CDS-L-elsbetiae_contig9636:5689..6045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 5690..6045 +
1691683994.3432348-CDS-L-elsbetiae_contig9636:5689..60451691683994.3432348-CDS-L-elsbetiae_contig9636:5689..6045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 5690..6045 +
1622817029.4291282-CDS-L-elsbetiae_contig9636:6090..64731622817029.4291282-CDS-L-elsbetiae_contig9636:6090..6473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 6091..6473 +
1691683994.3555758-CDS-L-elsbetiae_contig9636:6090..64731691683994.3555758-CDS-L-elsbetiae_contig9636:6090..6473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 6091..6473 +
1622817029.4426267-CDS-L-elsbetiae_contig9636:7052..71891622817029.4426267-CDS-L-elsbetiae_contig9636:7052..7189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 7053..7189 +
1691683994.3665977-CDS-L-elsbetiae_contig9636:7052..71891691683994.3665977-CDS-L-elsbetiae_contig9636:7052..7189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 7053..7189 +
1622817029.457527-CDS-L-elsbetiae_contig9636:7495..76091622817029.457527-CDS-L-elsbetiae_contig9636:7495..7609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 7496..7609 +
1691683994.379909-CDS-L-elsbetiae_contig9636:7495..76091691683994.379909-CDS-L-elsbetiae_contig9636:7495..7609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9636 7496..7609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9636.18614.1

>prot_L-elsbetiae_contig9636.18614.1 ID=prot_L-elsbetiae_contig9636.18614.1|Name=mRNA_L-elsbetiae_contig9636.18614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=425bp
QQLRHRPVSAPARRRNPLPGSSSSVGATKGKNRRRRQQQQQQQQQQRRRP
ETASGSGGSGEGRGGTGCWGSGRSGGGGRMHGLEQFECLKARLAKTVEGS
SNFVDDVRRLRKAGGLRYCNDGNAGSADAWSGIARRGRGGAASGGQASPL
LRGGGGGSAGAIAEKGAKSAAFAPAPVCSAGDVEPLALAKELGVQSIVDR
ITRAIIQDGRAAGEAGAGGRGHGHGAIAASPGVTTATNTGVRGDHNGDQY
RPQLSPPPPANQGQQPQRAITDKPWGSGAIGSSPSSRPPGSSSMRMGRPK
EDIERLRRVVRDTMSSPQLSPPSSPSLSLYGGIGLAGGEHFGTQPPQWSQ
KHEACLADMRRRLRETGSPLLGAKDPAVLLGALLRRKGPLIRLLDEAVLS
LEDTAEALNGLVSVSTRLMIAGVR*
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mRNA from alignment at L-elsbetiae_contig9636:4830..7609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9636.18614.1 ID=mRNA_L-elsbetiae_contig9636.18614.1|Name=mRNA_L-elsbetiae_contig9636.18614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2780bp|location=Sequence derived from alignment at L-elsbetiae_contig9636:4830..7609+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCTACGGCACCGCCCTGTTTCGGCGCCTGCGCGCCGTCGGAACCC
GCTTCCAGGGTCCTCATCATCCGTGGGCGCTACGAAGGGCAAGAACCGGC
GGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGAGGCCC
GAAACGGCTTCGGGAAGCGGGGGGAGCGGGGAGGGTCGTGGGGGTACAGG
CTGTTGGGGGAGTGGTCGGAGCGGGGGCGGGGGCAGAATGCACGGGCTAG
AGCAATTCGAGTGCCTGAAGGCTCGCTTGGCAAAGGTGAGGGTTGAAAGT
ACCAATTTCTGAGGGGTGTACCGTAGGTGACATAAGATAAGACACCCCCT
GGACCGATTTCAAAGTTCAAGTACTCCACAGCAAGCATAGCGTCAGCCCC
GAAAAGGGCGGCGTTGGAAAGATCTCGCGAAAATGTGGCATTTGTGGTTA
GAATCGTATTTGTTGCGGAGTAACCAAGCTTTCAATATCGGTCCAGGGGG
TGTCTTATCTTATATCACCTACGGTAGACCGCAGAGGACGGTTTCAGTAC
CTTCATTTCGTGATTTTGTTTTGCCGCCACCGCTGCCCATGCGGGGGGTG
CTATTATTGAGTCTCATCTTGCCCTTGAACCACCCCGAGCGATTTCACCC
CAGACGCAGTTTCAATCAATGAGCGTATGCAGCTCTCTGCCTCTCTCTCC
CTGTTTCTCTCTCTCCCTCTATGACCCGCCCCCGCGATCGTTCTTGTGCG
GTGTTAAACTTTGATCGGGCCTGTACTCACCGCAACGGTTTCCGTGTCCT
TTCCGCTCTCCTCGCCGGCCGCGCATGCTTCGTTTTCTGCAAAACCGTAC
AATACAACAGACGGTCGAAGGCTCGTCGAACTTTGTTGACGACGTCAGAC
GCCTGCGCAAGGCGGGCGGCCTACGCTACTGCAATGATGGGAATGCTGGC
TCCGCTGATGCGTGGAGCGGGATAGCGAGAAGAGGAAGGGGCGGGGCAGC
ATCTGGGGGGCAGGCGTCCCCTCTGCTGCGCGGGGGGGGTGGCGGCTCCG
CTGGTGCTATCGCCGAGAAGGGTGCGAAGTCGGCAGCGTTCGCACCAGCA
CCGGTTTGCTCGGCGGGGGATGTGGAACCCTTGGCGCTGGCGAAAGAGCT
GGGCGTACAATCCATCGTCGACCGAATCACGCGAGCCATCATTCAGGACG
GCAGGGCGGCTGGTGAGTGCGGTGGAATCGATGGACGCTCAGGAGCAGCA
GGGGGTTCAAGGGCAGGAGCAGGGGGGAGGGGGCACGGACACGGGGCGAT
AGCAGCTAGCCCTGGTGTGACTACTGCTACGAACACCGGGGTGCGTGGGG
ATCATAACGGGGATCAGTATCGCCCGCAGTTGTCACCCCCTCCACCCGCG
AACCAGGGGCAACAACCGCAGCGCGCGATCACTGATAAGCCTTGGGGCTC
TGGGGCGATAGGGTCGTCCCCATCCTCCCGGCCTCCCGGCAGCAGTTCCA
TGAGAATGGGACGTCCTAAGGAAGACATCGAGCGGCTCAGACGAGTCGTG
CGAGACACCATGTCGTCACCGCAACTTTCGCCGCCGTCGTCCCCATCGCT
GTCCCTCTATGGTGGTATCGGGCTGGCGGGGGGAGAGCACTTCGGTGAGC
GCGGCTGGTTGCGTGTGGGGTTTTACAGGGGTGGTCACAGAGGTTTGCTT
TGAGGGTGGTACAGATGCTACTGAATAGGCAAGATAATGCAAGCGCAACG
GAGGTGTGAAGAGGCCTTCTGCCGATGGCACCACTCACGCGAGCGCTGTT
GCTGTGACAGTGGAGGCGTTCCCAGAGGTCGAATAAAACCTGTGACAAGC
GCTGCCCTTCGACTGGCTAATATTCTCGACTTTGCGAACGCCGGTCTGTT
CTGTGATAGATCTCCGGCGGTGGCGGTGGTGCCTGAGGTGGTGCCGGCTG
GGCCGGATGGAGAGATGAAGATCTAGCTACTTTAGGGTAGATTGAAACAC
CCAGCTCTCGTGCTGTTGCATATTTATGCAGAGACGAAAACACGTTGTCA
TTGTGGGTGACGAAAAGCGCTGAACTGATCATGGTTGGGCTGGAGAGCGC
AGCAAGCGAACCACCATCTCGTCCACTCGCAAAATGCTTGCCATTTTCTC
AGTCACGCGACTACAGGACCACGACCGCCGAGTAGACCCAGTGACATCGC
TTCCGCTGTTGCTTTCGCGGCAGGAACCCAGCCCCCCCAATGGTCCCAGA
AGCACGAGGCGTGCCTTGCGGACATGAGGCGACGGCTGAGAGAGACGGGT
TCGCCCTTGCTAGGGGCGAAGGACCCCGCTGTCCTGCTCGGAGCTCTTCT
CAGGAGAAAGGTAGGGTAGGTGGCTGGGTGGGTGGCCAGGATAAGGGCGA
AAATTGGCGGCACGTAGCAGTATCCCTTGATTGCGTGGAATGGGTTTGAG
CAGCTTTCTTCTGTTTGCCAGGTCTGAAACAAGCCAGCCCAAACCGGTGG
CTGAGATTGTTTTATTTCTTTTATTAGCCCTCTGCTTTGCACACCACGGT
GTTTTTTTGTGCGGTTTGTTTACTTTCCAGTCCCCGTAATGAAAGACCGG
AGAGCAAGCAAGCGTGGATGCCGTTAAGCAAATGTTTTGTGCTTGCGCGA
AATTGCGTTTCTTCAGGGACCACTCATCCGGCTGCTGGATGAAGCCGTTC
TGTCGTTGGAAGACACCGCGGAGGCTCTCAACGGTCTCGTGTCGGTATCG
ACCCGCCTGATGATTGCTGGCGTCAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9636:4830..7609+

>mRNA_L-elsbetiae_contig9636.18614.1 ID=mRNA_L-elsbetiae_contig9636.18614.1|Name=mRNA_L-elsbetiae_contig9636.18614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2550bp|location=Sequence derived from alignment at L-elsbetiae_contig9636:4830..7609+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCTACGGCACCGCCCTGTTTCGGCGCCTGCGCGCCGTCGGAACCC
GCTTCCAGGGTCCTCATCATCCGTGGGCGCTACGAAGGGCAAGAACCGGC
GGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGAGGCCC
GAAACGGCTTCGGGAAGCGGGGGGAGCGGGGAGGGTCGTGGGGGTACAGG
CTGTTGGGGGAGTGGTCGGAGCGGGGGCGGGGGCAGAATGCACGGGCTAG
AGCAATTCGAGTGCCTGAAGGCTCGCTTGGCAAAGCAGCAGCTACGGCAC
CGCCCTGTTTCGGCGCCTGCGCGCCGTCGGAACCCGCTTCCAGGGTCCTC
ATCATCCGTGGGCGCTACGAAGGGCAAGAACCGGCGGCGGCGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGACGGAGGCCCGAAACGGCTTCGGGA
AGCGGGGGGAGCGGGGAGGGTCGTGGGGGTACAGGCTGTTGGGGGAGTGG
TCGGAGCGGGGGCGGGGGCAGAATGCACGGGCTAGAGCAATTCGAGTGCC
TGAAGGCTCGCTTGGCAAAGACGGTCGAAGGCTCGTCGAACTTTGTTGAC
GACGTCAGACGCCTGCGCAAGGCGGGCGGCCTACGCTACTGCAATGATGG
GAATGCTGGCTCCGCTGATGCGTGGAGCGGGATAGCGAGAAGAGGAAGGG
GCGGGGCAGCATCTGGGGGGCAGGCGTCCCCTCTGCTGCGCGGGGGGGGT
GGCGGCTCCGCTGGTGCTATCGCCGAGAAGGGTGCGAAGTCGGCAGCGTT
CGCACCAGCACCGGTTTGCTCGGCGGGGGATGTGGAACCCTTGGCGCTGG
CGAAAGAGCTGGGCGTACAATCCATCGTCGACCGAATCACGCGAGCCATC
ATTCAGGACGGCAGGGCGGCTGGTGAACGGTCGAAGGCTCGTCGAACTTT
GTTGACGACGTCAGACGCCTGCGCAAGGCGGGCGGCCTACGCTACTGCAA
TGATGGGAATGCTGGCTCCGCTGATGCGTGGAGCGGGATAGCGAGAAGAG
GAAGGGGCGGGGCAGCATCTGGGGGGCAGGCGTCCCCTCTGCTGCGCGGG
GGGGGTGGCGGCTCCGCTGGTGCTATCGCCGAGAAGGGTGCGAAGTCGGC
AGCGTTCGCACCAGCACCGGTTTGCTCGGCGGGGGATGTGGAACCCTTGG
CGCTGGCGAAAGAGCTGGGCGTACAATCCATCGTCGACCGAATCACGCGA
GCCATCATTCAGGACGGCAGGGCGGCTGGTGAGGCAGGAGCAGGGGGGAG
GGGGCACGGACACGGGGCGATAGCAGCTAGCCCTGGTGTGACTACTGCTA
CGAACACCGGGGTGCGTGGGGATCATAACGGGGATCAGTATCGCCCGCAG
TTGTCACCCCCTCCACCCGCGAACCAGGGGCAACAACCGCAGCGCGCGAT
CACTGATAAGCCTTGGGGCTCTGGGGCGATAGGGTCGTCCCCATCCTCCC
GGCCTCCCGGCAGCAGTTCCATGAGAATGGGACGTCCTAAGGAAGACATC
GAGCGGCTCAGACGAGTCGTGCGAGACACCATGTCGTCACCGCAACTTTC
GCCGCCGTCGTCCCCATCGCTGTCCCTCTATGGTGGTATCGGGCTGGCGG
GGGGAGAGCACTTCGGGCAGGAGCAGGGGGGAGGGGGCACGGACACGGGG
CGATAGCAGCTAGCCCTGGTGTGACTACTGCTACGAACACCGGGGTGCGT
GGGGATCATAACGGGGATCAGTATCGCCCGCAGTTGTCACCCCCTCCACC
CGCGAACCAGGGGCAACAACCGCAGCGCGCGATCACTGATAAGCCTTGGG
GCTCTGGGGCGATAGGGTCGTCCCCATCCTCCCGGCCTCCCGGCAGCAGT
TCCATGAGAATGGGACGTCCTAAGGAAGACATCGAGCGGCTCAGACGAGT
CGTGCGAGACACCATGTCGTCACCGCAACTTTCGCCGCCGTCGTCCCCAT
CGCTGTCCCTCTATGGTGGTATCGGGCTGGCGGGGGGAGAGCACTTCGGA
ACCCAGCCCCCCCAATGGTCCCAGAAGCACGAGGCGTGCCTTGCGGACAT
GAGGCGACGGCTGAGAGAGACGGGTTCGCCCTTGCTAGGGGCGAAGGACC
CCGCTGTCCTGCTCGGAGCTCTTCTCAGGAGAAAGGAACCCAGCCCCCCC
AATGGTCCCAGAAGCACGAGGCGTGCCTTGCGGACATGAGGCGACGGCTG
AGAGAGACGGGTTCGCCCTTGCTAGGGGCGAAGGACCCCGCTGTCCTGCT
CGGAGCTCTTCTCAGGAGAAAGGGACCACTCATCCGGCTGCTGGATGAAG
CCGTTCTGTCGTTGGAAGACACCGCGGAGGCTCTCAACGGTCTCGTGTCG
GTATCGACCCGCCTGATGATTGCTGGCGTCAGGTAAGGACCACTCATCCG
GCTGCTGGATGAAGCCGTTCTGTCGTTGGAAGACACCGCGGAGGCTCTCA
ACGGTCTCGTGTCGGTATCGACCCGCCTGATGATTGCTGGCGTCAGGTAA
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