mRNA_L-elsbetiae_contig9635.18613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9635.18613.1
Unique NamemRNA_L-elsbetiae_contig9635.18613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9635.18613.1 vs. uniprot
Match: A0A6H5KLX2_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX2_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 3.530e-63
Identity = 115/172 (66.86%), Postives = 135/172 (78.49%), Query Frame = 3 
Query:  225 VYGELQRCLDERVSVEAQAVEAAMLMAKECIEDQSLIEYEWKIQGGSFDVDEGVRLVPIAAANVSNPDATEDIELFSKLQVLNLRHALLSIQFVGAQGFDHAVVMPDDVVDVLLRLSTEEGELPDSWACAPKHELIQVVTSLLGLEGNGQVEVEKVVSGITSKTPSQFLLLA 740
            VYGELQRCLDERVS E QAVEAAM MA+ECI++QS IE+EWKIQG SF VDE  RLVP+   NVS PD +E + +F+KLQ L L+HA+ SIQ VG +G D A+VMP+DVV+VLLRLS EEG LPD WACA K +L+QV T  L  E  GQV+VEKVVS ITSKTP + +LLA
Sbjct: 1350 VYGELQRCLDERVSEEQQAVEAAMTMAEECIDEQSAIEHEWKIQGKSFSVDENFRLVPVPTTNVSRPDVSETLGVFTKLQALRLQHAMASIQHVGTEGLDDAMVMPEDVVEVLLRLS-EEGALPDCWACASKADLVQVATRFLDPEQTGQVQVEKVVSSITSKTPEELILLA 1520
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BLAST of mRNA_L-elsbetiae_contig9635.18613.1 vs. uniprot
Match: D7FRW9_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW9_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.220e-62
Identity = 114/172 (66.28%), Postives = 133/172 (77.33%), Query Frame = 3 
Query:  225 VYGELQRCLDERVSVEAQAVEAAMLMAKECIEDQSLIEYEWKIQGGSFDVDEGVRLVPIAAANVSNPDATEDIELFSKLQVLNLRHALLSIQFVGAQGFDHAVVMPDDVVDVLLRLSTEEGELPDSWACAPKHELIQVVTSLLGLEGNGQVEVEKVVSGITSKTPSQFLLLA 740
            VYGELQRCLDERVS E +AVEAAM MA+ECI++QS IE+EWKIQG SF VDE  RLVP+   NVS PD +E + +F+KLQ L L+ AL SIQ VG +G D A+VMP+DVV+VLLRLS EEG LPD WACA K + IQV T  L LE  GQVEVEKVV  ITSKTP + ++LA
Sbjct: 1417 VYGELQRCLDERVSEEQRAVEAAMTMAEECIDEQSAIEHEWKIQGESFSVDESFRLVPVPTPNVSRPDVSETLGVFTKLQALRLQDALASIQHVGTEGLDDAMVMPEDVVEVLLRLSAEEGALPDCWACASKADFIQVATRFLDLEQIGQVEVEKVVLSITSKTPEELIILA 1588
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9635.18613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLX2_9PHAE3.530e-6366.86Calponin-homology (CH) domain-containing protein n... [more]
D7FRW9_ECTSI1.220e-6266.28Calponin-homology (CH) domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9635contigL-elsbetiae_contig9635:2616..5107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue2.8e-56
Seed eggNOG ortholog2880.D7FRW9
Preferred nameCPC1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMPK@1,2QR7Y@2759
Ec32 ortholog descriptionProtein of unknown function DUF1042
Ec32 orthologEc-03_003430.2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size800
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.3118432-UTR-L-elsbetiae_contig9635:2615..26721622817029.3118432-UTR-L-elsbetiae_contig9635:2615..2672Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9635 2616..2672 -
1691683994.2298844-UTR-L-elsbetiae_contig9635:2615..26721691683994.2298844-UTR-L-elsbetiae_contig9635:2615..2672Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9635 2616..2672 -
1622817029.3753755-UTR-L-elsbetiae_contig9635:4889..51071622817029.3753755-UTR-L-elsbetiae_contig9635:4889..5107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9635 4890..5107 -
1691683994.3151424-UTR-L-elsbetiae_contig9635:4889..51071691683994.3151424-UTR-L-elsbetiae_contig9635:4889..5107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9635 4890..5107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.3223774-CDS-L-elsbetiae_contig9635:2672..27801622817029.3223774-CDS-L-elsbetiae_contig9635:2672..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 2673..2780 -
1691683994.2552276-CDS-L-elsbetiae_contig9635:2672..27801691683994.2552276-CDS-L-elsbetiae_contig9635:2672..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 2673..2780 -
1622817029.3339932-CDS-L-elsbetiae_contig9635:2978..30451622817029.3339932-CDS-L-elsbetiae_contig9635:2978..3045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 2979..3045 -
1691683994.271059-CDS-L-elsbetiae_contig9635:2978..30451691683994.271059-CDS-L-elsbetiae_contig9635:2978..3045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 2979..3045 -
1622817029.3439262-CDS-L-elsbetiae_contig9635:3228..33591622817029.3439262-CDS-L-elsbetiae_contig9635:3228..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 3229..3359 -
1691683994.2822175-CDS-L-elsbetiae_contig9635:3228..33591691683994.2822175-CDS-L-elsbetiae_contig9635:3228..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 3229..3359 -
1622817029.3543358-CDS-L-elsbetiae_contig9635:4443..45241622817029.3543358-CDS-L-elsbetiae_contig9635:4443..4524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 4444..4524 -
1691683994.2919986-CDS-L-elsbetiae_contig9635:4443..45241691683994.2919986-CDS-L-elsbetiae_contig9635:4443..4524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 4444..4524 -
1622817029.3651354-CDS-L-elsbetiae_contig9635:4751..48891622817029.3651354-CDS-L-elsbetiae_contig9635:4751..4889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 4752..4889 -
1691683994.3030846-CDS-L-elsbetiae_contig9635:4751..48891691683994.3030846-CDS-L-elsbetiae_contig9635:4751..4889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9635 4752..4889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9635.18613.1prot_L-elsbetiae_contig9635.18613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9635 2673..4889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9635.18613.1

>prot_L-elsbetiae_contig9635.18613.1 ID=prot_L-elsbetiae_contig9635.18613.1|Name=mRNA_L-elsbetiae_contig9635.18613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MKVYGELQRCLDERVSVEAQAVEAAMLMAKECIEDQSLIEYEWKIQGGSF
DVDEGVRLVPIAAANVSNPDATEDIELFSKLQVLNLRHALLSIQFVGAQG
FDHAVVMPDDVVDVLLRLSTEEGELPDSWACAPKHELIQVVTSLLGLEGN
GQVEVEKVVSGITSKTPSQFLLLA*
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mRNA from alignment at L-elsbetiae_contig9635:2616..5107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9635.18613.1 ID=mRNA_L-elsbetiae_contig9635.18613.1|Name=mRNA_L-elsbetiae_contig9635.18613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2492bp|location=Sequence derived from alignment at L-elsbetiae_contig9635:2616..5107- (Laminarionema elsbetiae ELsaHSoW15)
CCTGAAGCAAATCACGGTAATTCTGATGCAGAACAATGTTTCGCCGACTG
AGCCGCAGCAATTGCATTTTCTGATAATCTTGCAGAGCAAAACCAAAATC
AGAATACCACGGATCAGGCACGATACAACTTTTAATACGGGTTGGGGGCC
AAGACCCCTGCTTCGAGATCTGAACAGAAACTCGCTCTCGGTTGTTTTAT
CAATCCCAACTTGGGCGTATGAAGGTCTATGGGGAACTGCAACGCTGCCT
GGATGAACGCGTGTCTGTTGAAGCACAAGCTGTAGAGGCCGCCATGTTGA
TGGCAAAGGAGTGCATTGAAGACCAGTCCCTCATCGAGTATGAATGGAAA
ATACAGGTGAGGCATGAGACATACACATCGATGGAGTATGCTACCTCCTC
TAAAGCATCTCAGTACCGAAGCTGTACACTACAGCCCCCCCCCCCCCAAA
TGAGACACACATCCGATGGCTGAATCACCACGAGAAACTGCGCCCCCGAG
CTACAAAGCACATAGTTACGCCCTTTATTCCAGAGGGTGCAGCTTTGCTC
GCGTCGCGCTGTACTTACTGCTTGTCCGTTCAGGGTGGCTCATTCGATGT
GGATGAAGGCGTTCGGCTGGTTCCGATTGCGGCGGCCAATGTTTCAAACC
CGGACGCTACCGAGGTACGATCGTTCCATTTTCCCGCCAGCAATTTCCCA
CGAGTACACAACGGAGCTGATTGCCCCAGAATAAGGGGTCGGACTTTGGT
GTAACAATAACCATCGTTCTGGTAAAGAAACTTGGTATCAGTCAGATTTA
CCTTAGGAGTCGCCGGTTCGAGTCCCGCAATCGCCACGTCTTTCCCTTCT
TTCGACCGTCTCTATACCTGGCTCGAAGTTGAATAATATATTCCTCTTTT
TTTATGTGCACTCATATTTGCCGACACATTGCAAATTTCGTTGATCATAA
CGGTGGAAGCTTTCAAAGACAGTTGTTGACGGCATTGAAAAAAACAACAA
AAAAACAAAGCAGAACAAAAAAATGAGCTTTCTTTTAGGCCGAAAATTAT
CGTTCTTGGTCTCGTGCGGAGTTTTTGATTCAAAACTTCCAGAAAAATGA
CGGGAAAACCCGAGATTCCCCCGGGGGGGGGAAGAATGGATGTAATTCAT
CCCTGGGTTTGTTTAGGTCAACCTCATCTCCTACTCTTTATTCAGCAAGC
AAACAAAGTTTGGCGTGCGCAAGTCACAGCTGCGCCAATTCGGCCTTAAA
AGTCCCGTACAGACAGAACTTTAGTCACTAAATAGACATCTAAATAGCCT
TTCGTACAACTAGCTCGTTCAAAAACTGTTGTTGTAAGGGTCGCAGAAAT
TGTTGCTCTTGCGCCAATATTCCAACTCGGCTTGTGAAGATGTGTGCGAA
TCTACGCGATGATGTAAGGCCGGCGGCTTGAAATATACCGGTACACTGCT
CTGATACTGGCAGATATTTTTTTCAACCTGCGAGAGATATCACGTGTTTC
CTGTGTGTCTCTATGCGTGTGTTTCGCGGCAAGTAGCAACGATCAAATTC
TGTTCTGCTCGGGTCGTACCCGCTCGGGATCTCCAGAAGAGAGGGGGGAT
GGTCTTGTTTTCATTGAAAGTGCCCGATGGGCGCAAAAAAAGTTATCGTT
GTCTTTTTACGTATCACTCTCCGTGGGAATCGAACGTTGCACTCTAACTG
ATGCCGTCACTGCTCGTCGTTTTTTTTTTGCACCGCACCACAACGAAGGA
TATTGAGTTGTTCAGTAAACTACAGGTGCTCAATCTGCGACACGCGCTAC
TTTCGATCCAATTCGTCGGCGCCCAGGGCTTCGATCATGCAGTTGTCATG
CCTGATGACGTGGTTGATGTCCTACTAAGGTGCGATGCCGTACTTTTTCG
GCAGTTTGTGGTCTTTTATGTGGAGTGTTATCTCTGGAAAAGCTATATTC
AGCGTTTTGTCCAAAAAATGAGGTATGAGCGTGACGCTCCACGATGTATT
CTCGAGTGGTAATCTTTGTGCGCTGTTTGATCATTTTTACTTGTGGTACC
GCGAATGGGCAGACTGTCTACGGAGGAAGGAGAGCTACCTGACAGCTGGG
CCTGCGCGCCCAAGCATGAGTTGATCCAGGTACAACCGCATTGAATCCTG
AATCAGGCTTCAAACGACGCATTCAGGCATTATTTTTAGTCGAAACAACG
TTGTTTGTACCATCGTTCTACTTATTTTGATCGACTTCGCATCGGATCCC
CCTCCTGTCGCAGTCGCGACGAACAACGGGCGTTGAACGTCTACATAACA
ACCCTCGTCCGGTTCGATATTCGGCAGGTGGTGACAAGTCTCCTTGGTCT
AGAGGGCAACGGGCAGGTTGAAGTGGAGAAGGTGGTGTCGGGCATCACAT
CCAAAACCCCTTCGCAGTTCCTACTCCTCGCCTGATACTGCTGTAGTAGT
ACCGTAAGGATGCGGGTCTTGGCACAATGCTGTGCAGTCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9635:2616..5107-

>mRNA_L-elsbetiae_contig9635.18613.1 ID=mRNA_L-elsbetiae_contig9635.18613.1|Name=mRNA_L-elsbetiae_contig9635.18613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig9635:2616..5107- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTCTATGGGGAACTGCAACGCTGCCTGGATGAACGCGTGTCTGT
TGAAGCACAAGCTGTAGAGGCCGCCATGTTGATGGCAAAGGAGTGCATTG
AAGACCAGTCCCTCATCGAGTATGAATGGAAAATACAGATGAAGGTCTAT
GGGGAACTGCAACGCTGCCTGGATGAACGCGTGTCTGTTGAAGCACAAGC
TGTAGAGGCCGCCATGTTGATGGCAAAGGAGTGCATTGAAGACCAGTCCC
TCATCGAGTATGAATGGAAAATACAGGGTGGCTCATTCGATGTGGATGAA
GGCGTTCGGCTGGTTCCGATTGCGGCGGCCAATGTTTCAAACCCGGACGC
TACCGAGGGTGGCTCATTCGATGTGGATGAAGGCGTTCGGCTGGTTCCGA
TTGCGGCGGCCAATGTTTCAAACCCGGACGCTACCGAGGATATTGAGTTG
TTCAGTAAACTACAGGTGCTCAATCTGCGACACGCGCTACTTTCGATCCA
ATTCGTCGGCGCCCAGGGCTTCGATCATGCAGTTGTCATGCCTGATGACG
TGGTTGATGTCCTACTAAGGATATTGAGTTGTTCAGTAAACTACAGGTGC
TCAATCTGCGACACGCGCTACTTTCGATCCAATTCGTCGGCGCCCAGGGC
TTCGATCATGCAGTTGTCATGCCTGATGACGTGGTTGATGTCCTACTAAG
ACTGTCTACGGAGGAAGGAGAGCTACCTGACAGCTGGGCCTGCGCGCCCA
AGCATGAGTTGATCCAGACTGTCTACGGAGGAAGGAGAGCTACCTGACAG
CTGGGCCTGCGCGCCCAAGCATGAGTTGATCCAGGTGGTGACAAGTCTCC
TTGGTCTAGAGGGCAACGGGCAGGTTGAAGTGGAGAAGGTGGTGTCGGGC
ATCACATCCAAAACCCCTTCGCAGTTCCTACTCCTCGCCTGAGTGGTGAC
AAGTCTCCTTGGTCTAGAGGGCAACGGGCAGGTTGAAGTGGAGAAGGTGG
TGTCGGGCATCACATCCAAAACCCCTTCGCAGTTCCTACTCCTCGCCTGA
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