mRNA_L-elsbetiae_contig956.18542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig956.18542.1
Unique NamemRNA_L-elsbetiae_contig956.18542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.020e-37
Identity = 94/257 (36.58%), Postives = 121/257 (47.08%), Query Frame = 1 
Query:   16 SDAECHASLNNELCGFDGGDCCTATCKDKPWAFCSRNDYECFDPEHNSSILPW-PDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNI-------CS------NSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASC---DVKLASKDCKDGNTFCVDERYRYDCDFGDLSKVERGDGFCDPQLNTAYCEYDGGDCCLSTCVSGVF 735
            SD EC+   N ELC +DGGDCC  TC D  +  C  + Y+C+DP+         PD  +  + +W    L++  C+   N   C FDGGDCCV SC+D+++         C       N  + C DP +          TPAPT       C     P   +G+  CD   NNE C FDGGDCCA SC          DCKD NT      Y  +C+   +     GDG CD   N+  C+YDGGDCC  TC   V+
Sbjct:  108 SDGECNYLNNYELCNYDGGDCCEETCIDSTYK-CGISGYDCWDPDQERKTTEVSPDYTYLCNDIW----LSDGHCDDDNNVEECSFDGGDCCVDSCVDAKYTCGVTYRDQCDPQSSDCNLRLICLDPVYK---------TPAPTPTLFNRTC-----PVEDIGNGRCDDEYNNEFCLFDGGDCCAPSCLGESCGAYEYDCKDPNT----PEYGLECNMDYV-----GDGECDSVTNSQECQYDGGDCCELTCKDSVY 336
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.020e-37
Identity = 90/244 (36.89%), Postives = 118/244 (48.36%), Query Frame = 1 
Query:   13 VSDAECHASLNNELCGFDGGDCCTATCKDKPWAFCSRNDYECFDPEHNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASCDVKLASKDCKDGNTFCVDERYRY--------DCDFGDLSKVERGDGFCDPQLNTAYCEYDGGDCCLSTC 720
            + + +C A LN   CG+DGGDCC  TC D P   CS +D++C           +PDC  G       W   +  C++  N+P+C +DGGDCC  SC+D     C +    C DPD  +T    +   P  TT  E           S++ D  CD+S N   C +DGGDCC  SC V     +C      C+D             DCD G L     GDGFCD +LNTA C +DGGDCC+ +C
Sbjct:   36 IGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSCSTSDFDCM----------YPDC--GGSECHEDW-AKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDYGCGSIGFACLDPDCGNT----TETAPENTTCEE-----------SWMNDGYCDSSNNYPSCDYDGGDCCECSC-VDGHDYECGSNGFSCLDPACFDPALVAEFPDCDAGWLGL---GDGFCDSELNTASCGWDGGDCCVCSC 247
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 9.430e-34
Identity = 92/269 (34.20%), Postives = 121/269 (44.98%), Query Frame = 1 
Query:   13 VSDAECHASLNNELCGFDGGDCCTATCKDKP-------------WAFCSRNDYECFDPEHNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSN-SDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASCDVKLASKD--------CKDGNTFCVDERYRYDCDFGDLSKVER-------GDGFCDPQLNTAYCEYDGGDCCLSTCVSGV 732
            + D  CH   NNELCG+DGGDCC  TC   P             +  C    + C DP  +++ +   +   G      + ++ +  CNM  NN AC +DGGDCC  +C D+  N C   S   C DP        +  +     T     +C   EYP   +G+  CD   NNELC +DGGDCC  +C+  L   D        C D N  CVD+      D   +  +E        GDG+C   LNT  C YDGGDCC  TC + V
Sbjct:  140 LGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGG-FACIDP--SAACVDDDEVTVGMVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDP-------AAPCVDDDSFTVDMIDNC---EYPGG-IGNGWCDVDNNNELCAYDGGDCCECTCE-SLEDDDWACRNNFACVDPNAPCVDD------DSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQNDV 387
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.190e-26
Identity = 89/271 (32.84%), Postives = 117/271 (43.17%), Query Frame = 1 
Query:   13 VSDAECHASLNNELCGFDGGDCCTATCK---DKPWAFCSRNDYECFDPEHNSSILPWPDCDFGTDGLWT--SWN--LNNSVCNMALNNPACRFDGGDCCVSSC---LDSEFNI----CSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASC------------DVKLASKDCKDGNTFCVDERYRYDCDFGDLSKVER-------GDGFCDPQLNTAYCEYDGGDCCLSTCVS 726
            + D  C    NNELC +DGGDCC  TC+   D  W    RN + C DP       P  D D  T  +    SW+  + +  C+  LN P C +DGGDCC  +C    D ++      C + +  C D D +              T   + +C   EYP   +G+  CD + N E CG+DGGDCC  +C            D       C D +  CVD+      D   +  VE        G+G+CD   N   C YDGGDCC  TC S
Sbjct:   63 IGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWH--CRN-FACVDPN-----APCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDI--------------TVDMFENC---EYPVD-IGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPSAPCVDD------DDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCES 301
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.500e-25
Identity = 84/251 (33.47%), Postives = 110/251 (43.82%), Query Frame = 1 
Query:   13 VSDAECHASLNNELCGFDGGDCCTATCKDKPWAFCSRNDYECFDP------EHNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASCDVKLASK------DCKDGNTFCVDERYRYDCDFGDLSKVER-GDGFCDPQLNTAYCEYDGGDCCLSTCVS 726
            + D  C    NNE+C +DGGDCC  TC D  +  C    + C DP      + N +      C    DG      L N  CN A N   C +D GDCC  +C     ++   SD  C D    +   P++       T   + DC          GD  C+   NNE CG+DGGDCC  +C V  +++       C D    CVD+      D  +   +E  GDG+CD   N   C+YDGGDCC  TC S
Sbjct:   74 IGDGFCSDENNNEVCDYDGGDCCECTCVDAFYP-CGYVAFACIDPSAACVDDDNITADIAESCH---DGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDL---SDFSCVD---FACVDPNAPCVDDDVTEGMFEDC-------FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDD-DVTADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCECTCGS 306
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.490e-25
Identity = 74/212 (34.91%), Postives = 100/212 (47.17%), Query Frame = 1 
Query:  172 WPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSNSD--IFCEDPD---HLSTPPPSSLITPAPTTASEWPDCNLGE---------YPAS-----FVGDSDCDASLNNELCGFDGGDCCAASCDVKL-ASKDC---KDGNTFCVDERYRYDCDFGDLSKVER------GDGFCDPQLNTAYCEYDGGDCCLSTC 720
            +PDC+  T        + +S+C++  N   C FDGGDCC  +C+D+   +C       FC DPD     ++ P  +  TP+  T+S+  D   G          YP        +GD  CD   N   CGFDGGDCCA +C +      +C    DG   C D     DC+  + ++ E        DG+CD  LNTA C YDGGDCC  TC
Sbjct:   61 YPDCEADTA------LVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSAPTSSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYD-CRDPDVPEDCNLANFAQCEGMNGYDWQDGYCDDDLNTAECGYDGGDCCRCTC 265
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.590e-24
Identity = 84/259 (32.43%), Postives = 115/259 (44.40%), Query Frame = 1 
Query:   19 DAECHASLNNELCGFDGGDCCTATCKDKPWAFCSRNDYECFDPEHNSSILPWPDC----DFGTDGLWTSW---NLNNSVCNMALNNPACRFDGGDCCVSSC--LDSEF-------NICSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASCDV-------KLASKDCKDGNTFCVDERYRYDCDFGDLSKVER--GDGFCDPQLNTAYCEYDGGDCCLSTC 720
            D  C    NNE+CG+DGGDCC  TC +  W     +DY C    +++ I P   C    D   D +       ++ N  C+   NN  C +DGGDCC  +C  LD++        N C N    C DP+       +  +     T     +C+     +  VG+  CD   NNE C +DGGDCC  +C+        + +   C D    CVDE   +  D  +  K     G+G+CD   N   C YDGGDCC  TC
Sbjct:   63 DGWCDQENNNEICGYDGGDCCECTCVNA-W----DDDYSC--AANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNG-FACIDPN-------APCVNDDDITLDIVENCD-----SVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPCVDED-SFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTC 300
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.720e-24
Identity = 70/196 (35.71%), Postives = 94/196 (47.96%), Query Frame = 1 
Query:  220 LNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSN--SDIFCEDPD---HLSTPPPSSLITPAPTTASEWPDCNLGE---------YPAS-----FVGDSDCDASLNNELCGFDGGDCCAASCDVKL-ASKDCK---DGNTFCVDERYRYDCDFGDLSKVER------GDGFCDPQLNTAYCEYDGGDCCLSTC 720
            + +S+C+  +N   C FDGGDCC  +C+D+   +C    +  FC DPD     ++ P  +  TP+  T+S+  D   G          YP        +GD  CD   N   CGFDGGDCCA +C V      +C    DG   C D     DC+  + ++ E        DG+CD  LNT  C YDGGDCC  TC
Sbjct:   69 VGDSLCDFDVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPTSSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDADVEHECGLLGDGYD-CRDPDVPDDCNLANFAQCEDMNGYDWQDGYCDDDLNTPECGYDGGDCCRCTC 263
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.720e-20
Identity = 80/257 (31.13%), Postives = 104/257 (40.47%), Query Frame = 1 
Query:   52 LCGFDGGDCCTATCKDKPWA-----FCSRND--YECFDPEHNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDS----------EFNICSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASCDVKLASKD----------------CKDGNTFCV-DERYRYDCDFGDLSKVERGDGFCDPQLNTAYCEYDGGDCCLSTC 720
            L G+DGGDCC  TC + PW       CS++   + C DP+  +S +   D          +W L +  C+   NN  C +DGGDCC  +C+             +N C + D  C D D +              TA    +C         VGD  CD   NNELCG+DGGDCC  +C+   A  D                C D N  CV D+    D D      V  GDG+CD   N   C    G C   +C
Sbjct:   18 LPGYDGGDCCECTCVN-PWGDDDDWVCSKDGSGFACIDPD--ASCVDDDDITVEIAQNCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDI--------------TAVMVEECGW----VRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGSGFACIDPNAPCVNDDDITVDVDES-CDAVNMGDGYCDISNNIEAC----GACSWLSC 248
[Close]
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.750e-20
Identity = 71/224 (31.70%), Postives = 96/224 (42.86%), Query Frame = 1 
Query:    4 IWHVSDAECHASLNNELCGFDGGDCCTATCK---DKPW-----AFCSRNDYECFDPEHNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSCLDSEFNICSNSDIF-CEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPASFVGDSDCDASLNNELCGFDGGDCCAASC------DVKLASK----DCKDGNTFCVDERYRYDCDF 618
             W + D  C    NNELCG+DGGDCC  TC+   D  W       C    + C DP  ++  +   D     D    +  + +  C+M  NN AC +DGGDCC  +C  +  N C     F C DP        +  +     T     +C+        +G+  CD   NNELC +DGGDCC  +C      D   +S+    +CKD N  C  E      DF
Sbjct:  106 FWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEG-FACIDP--SAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPN--NKCGGRSGFACIDPG-------APCVDDDSVTVDMIDNCDY----LRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDF 313
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig956.18542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTB5_9PHAE1.020e-3736.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI6.020e-3736.89Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JM92_9PHAE9.430e-3434.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI2.190e-2632.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE1.500e-2533.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE2.490e-2534.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI1.590e-2432.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX76_ECTSI1.720e-2435.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE1.720e-2031.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI3.750e-2031.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig956contigL-elsbetiae_contig956:2339..7942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue9.6e-34
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size740
Cds size738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig956.18542.1prot_L-elsbetiae_contig956.18542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig956 2339..7942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817022.6393096-CDS-L-elsbetiae_contig956:2338..23791622817022.6393096-CDS-L-elsbetiae_contig956:2338..2379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 2339..2379 -
1691683989.4612849-CDS-L-elsbetiae_contig956:2338..23791691683989.4612849-CDS-L-elsbetiae_contig956:2338..2379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 2339..2379 -
1622817022.6504297-CDS-L-elsbetiae_contig956:3060..32431622817022.6504297-CDS-L-elsbetiae_contig956:3060..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 3061..3243 -
1691683989.4727204-CDS-L-elsbetiae_contig956:3060..32431691683989.4727204-CDS-L-elsbetiae_contig956:3060..3243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 3061..3243 -
1622817022.66234-CDS-L-elsbetiae_contig956:3744..39811622817022.66234-CDS-L-elsbetiae_contig956:3744..3981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 3745..3981 -
1691683989.4828155-CDS-L-elsbetiae_contig956:3744..39811691683989.4828155-CDS-L-elsbetiae_contig956:3744..3981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 3745..3981 -
1622817022.6723607-CDS-L-elsbetiae_contig956:6227..64341622817022.6723607-CDS-L-elsbetiae_contig956:6227..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 6228..6434 -
1691683989.4932537-CDS-L-elsbetiae_contig956:6227..64341691683989.4932537-CDS-L-elsbetiae_contig956:6227..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 6228..6434 -
1622817022.6821854-CDS-L-elsbetiae_contig956:7872..79421622817022.6821854-CDS-L-elsbetiae_contig956:7872..7942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 7873..7942 -
1691683989.5046108-CDS-L-elsbetiae_contig956:7872..79421691683989.5046108-CDS-L-elsbetiae_contig956:7872..7942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig956 7873..7942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig956.18542.1

>prot_L-elsbetiae_contig956.18542.1 ID=prot_L-elsbetiae_contig956.18542.1|Name=mRNA_L-elsbetiae_contig956.18542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
HIWHVSDAECHASLNNELCGFDGGDCCTATCKDKPWAFCSRNDYECFDPE
HNSSILPWPDCDFGTDGLWTSWNLNNSVCNMALNNPACRFDGGDCCVSSC
LDSEFNICSNSDIFCEDPDHLSTPPPSSLITPAPTTASEWPDCNLGEYPA
SFVGDSDCDASLNNELCGFDGGDCCAASCDVKLASKDCKDGNTFCVDERY
RYDCDFGDLSKVERGDGFCDPQLNTAYCEYDGGDCCLSTCVSGVFT
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mRNA from alignment at L-elsbetiae_contig956:2339..7942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig956.18542.1 ID=mRNA_L-elsbetiae_contig956.18542.1|Name=mRNA_L-elsbetiae_contig956.18542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5604bp|location=Sequence derived from alignment at L-elsbetiae_contig956:2339..7942- (Laminarionema elsbetiae ELsaHSoW15)
CACATCTGGCATGTGAGCGACGCGGAGTGCCATGCCAGCCTGAACAACGA
ACTTTGTGGTTTCGATGGAGGTGCGCTCTGTGGGGTTTGAGAGGAGAACC
TCTGGTTTGCCGCAAGAAGGTTTTTGGTGTGCCCCCGATGTGTAACGACG
AGTTCATCATATCACAGGTATACCTCGTTGGTGGGAAGTCCTTCGTTTCC
GCTCCGAAGGTAATGCTCGGGATAAATCGGCTACTCCTTCCCGACGGTTG
ATTACCGCCGTCGTCTCCAAGTTCCCCTTGGGGAGAGAATTTATTTATTT
TTGTGAAAAACGCAATCACCCCGGGGGGGAGAATTCAGGCCGAAACTGTG
ATGGGGGAGTTCTTAGAGACGACCATCTGCGGCAATTCGGGTATGAGCCG
CAGAACTTGCTCCATTTTGCGCGGTATTGATCAGCATTTTGTCCTCATCC
AGGCCAGCACCCTTCTATCCATGCCTACACAACACTGGGTAGCAGGGGAG
ATTGCAAGTATTTTGGGTGGGATTGCCCCCCAGAGAATACGCGGGCAGTC
ACGCGTTGAACGATAACGTGGTGAAACTCGAGCTGAACGGAACCCGAGAT
GAAACGGAGTACAAAATGGCGCAGATTGTACCACCGGGATTGCACGTAGC
GCTCAGCAGCCTGAAAGAAGGAATGAACGGTCGCGGTGTAACTCATGGTT
GTCCCTCGTTGTGGGGGTATCACACCGCGAAGCAAGCCAGCCACGTCGGA
GCTTCACACGTACGATGCCGCCTAATACCTCCTCGCAGGACGAGGCTCAC
ATGTTGTGTGCTTTGTTGGCGCTCGATCAACTGTCAACCTGGCCCGGCCA
ACACAAGTCGCCCCATATATTCATAGAAATAGGAGGGCTCTACAGTAAGC
ACAGCATTCTTGGCACGATCAATGATTTACTCTCAAGGTTCTTCTCGGAT
TTACTCCGAACATATACTCTCATTTTGTGGAAGCGCGCGCTGCGCTTTTC
GCGCTAATTTGGTCTTGTATTTCGTCGCACATGAATGTTGCCGGCTTCGA
GTATCGTCCAGGTGGTACGTAGAACTCTGTATCGCCAAGGCCAAATGATA
AAGTCTAAATACTCTGTACGAGACTGTCTGTCTCTTTGGAAATTAGCTGT
GCTTATCTCAAAGGATTTCGTGCGGGCTGTCTTGATGGCTGCTGTTTAAT
CAAGCTTTGTGGCGCTGGGTGAACACACACAGTGCCGATCAAGGATAGGA
TGAGCGTTGTCACAACATCATGTCTCGAATTGGCCGGGGCCGTAAACAAA
AATGGCATACATACATACAGAGATGTGATGTGATCAGCGCAGAGAGTGAT
GGCTCTTGTCACACTCAAGTGCAGGGCGAGTATCAGCATGTGCTGCCCCA
TGGTGAGTGAATATGGGCAGACGATATCTCCACTGATACGTACCTTTCAG
TGTCGCCCACCTGTAACCGCTGCTCTGCTTGCTGCGCATTTGTTTCCCAC
CTATTTAGGCGACTGCTGCACTGCCACGTGCAAGGACAAGCCTTGGGCGT
TTTGCTCAAGAAACGACTACGAGTGTTTCGATCCCGAGCACAATTCTTCC
ATCTTGCCGTGGCCGGATTGTGACTTCGGCACCGACGGCCTCTGGACCTC
CTGGAATCTGAACAACTCGGTGTGCAATATGGCGCTGAACAACCCTGCCT
GTCGCTTCGATGGAGGTAGGTGCAAGCTGCAGTGGCCTGAAGTATGGGAA
CAAAAAATGAAAAGAAGGGTCGTCCGTGCGCACTGACTGGAACAACACTG
ATAGACGTATGCTCCGGTTGGCGAGCAGGTCTTAAAGATCGTAGGTGCCA
CATTTGGGCCAATCGCGGCGTATTTAATCATGTCATTAATATCTTAGAGT
AGGGCTTCAGATCATAAAAGCAAGGCCAAAATGTTCAAACGTGGCTCCAG
CGTGTCAGCCACTCCACGTTGCCAACGTGTGGAAGATCACTGACGTTGCA
AATCCCACCGAGAGAGACGTTTGCCCCCCGCCCGGGTTGGCCAACCCCCC
CCCCAACCGGAGCAAACGTCCACTAGTGGGCCCTTCGAAGTAATTTGTAG
ATGCGTGCGTGCAGAGTCTCTGTAGCTCTAGGCGGCGTAAAGGGGCAGAA
CGCAGTGCACCCTCAAACGTTAACATTGGTGTCCTAGGATACGTTCTCGC
AGATAATCGGGCTCGGGCCTGATCGCAGGATCCACTGTAATCGACAAGTG
CAGCCAGCGTACAGCACCATTCGAATAGAAACACCAAAACAGCAGAGTGA
AATATACAAAGTTCTTTAGGAAAGGTTGGCGAAGAGCACAAGCTGGTTCA
GATTGAATACCCAAAATGTGTTTCCCGTGATTTCCTCCCGATGTTTTTTC
CACTTGACCACGAAAAGTGCACACACGTTCTGGAAGGCATTACTTGTATA
TAAAACTCCAAGAATGTTTTTTTTTTTTTTTTCATATTTGGTGTTGTTGT
TGAGAAATTATTTAGCCAAGATATGCCCCGCCCCTCGGTCAAATAGGTCG
ATCGCAACCAACCAAGGAATAAAGGCCAACAGAGTGAAAGTTAAGCACAT
AAACTCTTGGGGGGATAGTGCCTTCCAAAACTTGTGTGCAAAATTTCGTA
TTCGTCTAAAACGGTAAAAAAGCAGCGTGAGGAAATGCCACGTGCGTAAA
ACAAAAACAAAACTGCGGGCGGGCCCCCCATATTTACTTGATTAAAGAAT
ACTTTGGACGTTTTTCACGTCTGTTTCACGCCAAACGCCCCTGCCGCGTC
AGTGTTTTGAAGTATCCAACCAAACTCGCCACCAATGTTCGTTGGGAAAC
TGCGGAACGAATAGATGTCTTTTTTTTGCAGAAAAGGTACTCCGTACTTG
ATTCCAGGGACCTCAGGCTGGGACCGCCAAGGAACGCCGAAAGCCGGTCA
AGGACGCACCAGCCTATCGAAACACCTGCGAAATATGGTTTTGTTTTTGC
AGCGCCAGCAATTACCAAGATGCCAAGTTCGAGAACGATCGAGTTCAATT
TCGGGGAGGTACATATAGAGGAAGCCAGCTGTCAGGTCTTCAGTCCTAAT
TTCGGTGTTGCCGTGACCGAAATATCATGTTTTTGGACATAACTCGACGC
CAAGACAACCTTTCTCAAACCTCTTTTTTCGCTATGTTGTGTGTGTGTTG
TTTTCACATTCAAAACCATTCCGATCTCTCTATCCAGTACACCCCCATGA
GTCCGTACGAATCAAACACTGACGCGGCTGACTCCCGTGGTTACAGGATA
ACTTACCCTACAAAAAGGTTTTCTAGACTACTGAAAAACGAAAAGAAATA
AAATGGACCCGAAGGGTCTACAAAGCACAAAACAAACATCAGACACAGAT
AGTCTGGAGCCCTCCGCTCCTATTTGAGGTGAAAACAGAAATGGAAAGGC
CAACATCACCAACCGCGGGGGGATTTCTCCACCTGGTTTTATCTTGGTAC
CCCAACAATGCCGGGGTGTTCCGCGCCGGGTTCTCGCCGGTCAGGCCCAC
CGATCTAGTCCTCCCCACCCGTTGTGCCGCACACATGACACAGAAAGAGG
GGAAAATGATATCGGACGATAACCAGGTTCCCTTGTAGAGGAAATATTTT
GCTTTGATACACAGAGAATGTGAAGATTGAACAACGCATTGGGATGAAAA
ATCGTGTTTTTAGTTCTAGACAGCTTGGACGCCGCTGATTATTGGCCGAG
GCCACACCATCGCCTAGATATAGCTTCACACTCAAGCATTGACTCCAAAA
ACAGGAAACAAAACACGTTATCGTGTTGCTCGTGGGAAGCACCACGATAT
CGGTTCATTAAAATTGGACTCGTTGACAGTCGGGGAATGAATTTCGGGTT
TAAGTCTGAACCCGCTTGTAACGGCCAGCAGCATATCTGCTGCACCAACT
CCCGCCCGCAGGTGATTGTTGTGTCTCTTCGTGCCTCGACTCGGAATTCA
ACATTTGTTCGAACTCGGATATCTTCTGCGAGGATCCGGATCATCTGTCA
ACTCCACCACCGTCGAGCTTGATAACCCCGGCTCCTACAACGGCGTCGGA
ATGGCCTGACTGCAACCTCGGGGAGTATCCTGCCAGTTTTGTTGGCGATA
GCGATTGCGACGCATCCCTAAACAATGAGCTTTGCGGCTTCGATGGAGGT
GAGGTGTAAAAAGCCAACATGTCAAATACGAAGCCTAGCATGTGATATAC
ACTCCGCTCTGATAGAACGATCCAAAGACGACCATCGTTGTGTATTGAGA
GTTCTTGAACGCTTCAGCTACCGTTGTCGACAGAGTATACTTGTGCCGCC
GTTTACTAAAAACGGAATCTTTGAGCTGACGGCTCCCGCCACAATCGAAT
CAACTGCAGTAGCCACGACGTGCTACCAGACCCTGGACAGTTCTGTACCA
AAGCAATATTTTCCAGGGACATGGCGCGCGATTCTCCACTTTGCTCCCTC
TGCAAAGTGTGAGGATCAAAACCAAGACCTATTCACCATTCGCTGAGCTA
GAACTCTCGCTGCCTCCATTTCAAGAACTGCTGAGTCACCCTGCCTCATT
TCAATGGATGGAATGTTTCGCTGTTTCGTCGAAATAAGGGCCGTGTAGCT
GTTAGTACTCACTGAACGCCCGCCGTCATTCTGTCCCTGCTGCGGGTAGG
AGACTGTTGTGCGGCATCCTGTGATGTCAAACTGGCCTCCAAGGATTGCA
AAGACGGAAACACATTCTGCGTGGACGAACGCTACCGTTATGACTGCGAC
TTTGGTGACCTGAGCAAGGTCGAACGCGGGGATGGATTTTGCGATCCGCA
ACTTAATACGGCTTACTGCGAATACGACGGCGGTGAGTGCTGTCTGTTTG
GACATCGCACCAGCAGGGAGGCCTGCCCGGTAGAGTATGTGCGCTTCAAC
GTAATCCTTGACAATAAATATATAAATCAGGAGCTGTGCACCTTCGGTCC
ACATTCTTGAGTACGCTATGTTGTCCTGCAAGAGAGACGGTAAATAATCA
TTCGTGATGCTCGATGCTCCTAAAGTTCTTTATGCCCGCCAAAACTTCAG
TTATAGGCTGCTGGCGCCGTCTACTTCGGCCCATCGCTTGGAAACAGCTC
TTCTCTCCTTCACTTTTAGATCAAGACCCACAGCTTGTTTGCTCGGATTA
ATCCTTCACTGGCTGTATTCTGAATTTGATGGTGTGCCACATGGAATAGT
TGCAAAACTAGCATCGCCCTTGCAATACCTAGCATCGCGTGTGGTGAAAT
TCGCCAACTCTTACATCGCGTCGCTGGGTGGTGGTACGAGAGCTGATCCT
ACTACCGGGCAGAATTTCCCCGAAGATTCGGATTTACTGTGCACCTTACT
TACATTGTCAAGAATGTAAGCTGCTCTGCTCTGTGTAAGACTAGCGATCG
TCCAGAACAACATTTTTAGTGTGCCACGCATTCAGGAGAGGATGCCGAAA
AGTTGCCATCCAGCAAAATGCCTGAATCGGTTTAAACCTCTTTAACACTG
GGAATCAATTCAGGTGACTGCTGCTTGTCAACTTGCGTTTCGGGTGTCTT
CACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig956:2339..7942-

>mRNA_L-elsbetiae_contig956.18542.1 ID=mRNA_L-elsbetiae_contig956.18542.1|Name=mRNA_L-elsbetiae_contig956.18542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig956:2339..7942- (Laminarionema elsbetiae ELsaHSoW15)
CACATCTGGCATGTGAGCGACGCGGAGTGCCATGCCAGCCTGAACAACGA
ACTTTGTGGTTTCGATGGAGCACATCTGGCATGTGAGCGACGCGGAGTGC
CATGCCAGCCTGAACAACGAACTTTGTGGTTTCGATGGAGGCGACTGCTG
CACTGCCACGTGCAAGGACAAGCCTTGGGCGTTTTGCTCAAGAAACGACT
ACGAGTGTTTCGATCCCGAGCACAATTCTTCCATCTTGCCGTGGCCGGAT
TGTGACTTCGGCACCGACGGCCTCTGGACCTCCTGGAATCTGAACAACTC
GGTGTGCAATATGGCGCTGAACAACCCTGCCTGTCGCTTCGATGGAGGCG
ACTGCTGCACTGCCACGTGCAAGGACAAGCCTTGGGCGTTTTGCTCAAGA
AACGACTACGAGTGTTTCGATCCCGAGCACAATTCTTCCATCTTGCCGTG
GCCGGATTGTGACTTCGGCACCGACGGCCTCTGGACCTCCTGGAATCTGA
ACAACTCGGTGTGCAATATGGCGCTGAACAACCCTGCCTGTCGCTTCGAT
GGAGGTGATTGTTGTGTCTCTTCGTGCCTCGACTCGGAATTCAACATTTG
TTCGAACTCGGATATCTTCTGCGAGGATCCGGATCATCTGTCAACTCCAC
CACCGTCGAGCTTGATAACCCCGGCTCCTACAACGGCGTCGGAATGGCCT
GACTGCAACCTCGGGGAGTATCCTGCCAGTTTTGTTGGCGATAGCGATTG
CGACGCATCCCTAAACAATGAGCTTTGCGGCTTCGATGGAGGTGATTGTT
GTGTCTCTTCGTGCCTCGACTCGGAATTCAACATTTGTTCGAACTCGGAT
ATCTTCTGCGAGGATCCGGATCATCTGTCAACTCCACCACCGTCGAGCTT
GATAACCCCGGCTCCTACAACGGCGTCGGAATGGCCTGACTGCAACCTCG
GGGAGTATCCTGCCAGTTTTGTTGGCGATAGCGATTGCGACGCATCCCTA
AACAATGAGCTTTGCGGCTTCGATGGAGGAGACTGTTGTGCGGCATCCTG
TGATGTCAAACTGGCCTCCAAGGATTGCAAAGACGGAAACACATTCTGCG
TGGACGAACGCTACCGTTATGACTGCGACTTTGGTGACCTGAGCAAGGTC
GAACGCGGGGATGGATTTTGCGATCCGCAACTTAATACGGCTTACTGCGA
ATACGACGGCGGAGACTGTTGTGCGGCATCCTGTGATGTCAAACTGGCCT
CCAAGGATTGCAAAGACGGAAACACATTCTGCGTGGACGAACGCTACCGT
TATGACTGCGACTTTGGTGACCTGAGCAAGGTCGAACGCGGGGATGGATT
TTGCGATCCGCAACTTAATACGGCTTACTGCGAATACGACGGCGGTGACT
GCTGCTTGTCAACTTGCGTTTCGGGTGTCTTCACGGTGACTGCTGCTTGT
CAACTTGCGTTTCGGGTGTCTTCACG
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