mRNA_L-elsbetiae_contig9539.18525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9539.18525.1
Unique NamemRNA_L-elsbetiae_contig9539.18525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9539.18525.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.190e-24
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  389 PPAPLENKGVMFVVYRRLNAGRSLLLVTSYDGEDTLVGVGLFFCLKYGGRYIP 547
            PPAPL+NKGVMFVVYRRLNAGRSLLL T YDGEDT VGVGL FC KYGGRYIP
Sbjct:   19 PPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVFCSKYGGRYIP 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9539.18525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI5.190e-2488.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9539contigL-elsbetiae_contig9539:6648..7667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003690.1
Exons2
Model size899
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9539.18525.1prot_L-elsbetiae_contig9539.18525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9539 6961..7318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.7631376-UTR-L-elsbetiae_contig9539:6647..69601622817020.7631376-UTR-L-elsbetiae_contig9539:6647..6960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9539 6648..6960 +
1691683988.1396167-UTR-L-elsbetiae_contig9539:6647..69601691683988.1396167-UTR-L-elsbetiae_contig9539:6647..6960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9539 6648..6960 +
1622817020.8036187-UTR-L-elsbetiae_contig9539:7318..76671622817020.8036187-UTR-L-elsbetiae_contig9539:7318..7667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9539 7319..7667 +
1691683988.1838589-UTR-L-elsbetiae_contig9539:7318..76671691683988.1838589-UTR-L-elsbetiae_contig9539:7318..7667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9539 7319..7667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817020.7758296-CDS-L-elsbetiae_contig9539:6960..69771622817020.7758296-CDS-L-elsbetiae_contig9539:6960..6977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9539 6961..6977 +
1691683988.1534767-CDS-L-elsbetiae_contig9539:6960..69771691683988.1534767-CDS-L-elsbetiae_contig9539:6960..6977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9539 6961..6977 +
1622817020.7885544-CDS-L-elsbetiae_contig9539:7098..73181622817020.7885544-CDS-L-elsbetiae_contig9539:7098..7318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9539 7099..7318 +
1691683988.1691813-CDS-L-elsbetiae_contig9539:7098..73181691683988.1691813-CDS-L-elsbetiae_contig9539:7098..7318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9539 7099..7318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9539.18525.1

>prot_L-elsbetiae_contig9539.18525.1 ID=prot_L-elsbetiae_contig9539.18525.1|Name=mRNA_L-elsbetiae_contig9539.18525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MKPNSGYGQAGLHLASQFMRREKVDPPAPLENKGVMFVVYRRLNAGRSLL
LVTSYDGEDTLVGVGLFFCLKYGGRYIP*
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mRNA from alignment at L-elsbetiae_contig9539:6648..7667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9539.18525.1 ID=mRNA_L-elsbetiae_contig9539.18525.1|Name=mRNA_L-elsbetiae_contig9539.18525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig9539:6648..7667+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAAAAAGCAGTCGGTGTCAGCAGCAGCAGGAGCTTTGACGTGCATGA
TTTCCCTGCATGGTTGGGATACGGTTTCGGTCCGGCGGTGGTGGAGCCAG
ATCTTGTTGGGGGTCACCGGTGACGCTGATACCGTGTAGTCGGAGGGAGC
GAGGATCTTCTGAGCCAGACCCAAGCCGGGCGGAGGCAGCAGGAGGGAGC
GGCGAAGGAGAGACAAGGGCGTGAAGGACGCCGAAGCCCACGGCATACTC
GAGGCCAACCTTCTGTCGGCGCCCGGGTTACGGCCTCCACCGCCGCCGAC
TCTGCGGTGAACCATGAAGCCCAACTCAGGGTGAGGAGGAAGGCAACGTG
CATGAAGCCCAGGAGCACTTGTTGTTTCGTTTGTGGTTTCAACCAATGGA
CCCCTGTAACCTAGCCCCGGCCTCCGTTCTACCCCATGTTGTCCGCCGCA
GGTATGGTCAAGCCGGGCTTCATCTCGCTAGCCAGTTCATGCGGAGGGAA
AAGGTTGACCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGTGGT
GTATCGGCGCCTAAACGCCGGTCGCTCTCTGTTGTTGGTCACTTCGTACG
ACGGGGAGGATACTTTGGTAGGGGTGGGCTTGTTTTTTTGTTTGAAGTAC
GGAGGAAGATACATACCTTGAATATCTGTTCACGTGGTCGTGCAAAATTG
GATAGCGTTGTTCGAGATTAACTGACACAGTTTTTAGGTGTCGTTGACGC
CCTCGTTTCGAGTTGATAGCGGTAAAAAAGCTGAAGTCGAACCCCGTCGT
GATACGCACAACAACACAGCATGGCGTAATTCCGCGGGAAAACTCAGAAC
CTACACGAGTGGGAGATCACTAGAGCTTCGACCCCGCACCTGGTGCAGAC
AGGCGCAACTACTGTAGGAATCTGTGGTTTGCATGTCGCGTTCATGGGCT
CGTACCAATCGAAACACTTTCAAATGAAATTCCGAACATGAGATAACGCG
GAGGGGATTGATCGTCACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9539:6648..7667+

>mRNA_L-elsbetiae_contig9539.18525.1 ID=mRNA_L-elsbetiae_contig9539.18525.1|Name=mRNA_L-elsbetiae_contig9539.18525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig9539:6648..7667+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCCCAACTCAGGATGAAGCCCAACTCAGGGTATGGTCAAGCCGGG
CTTCATCTCGCTAGCCAGTTCATGCGGAGGGAAAAGGTTGACCCCCCGGC
TCCCCTCGAGAACAAGGGCGTGATGTTCGTGGTGTATCGGCGCCTAAACG
CCGGTCGCTCTCTGTTGTTGGTCACTTCGTACGACGGGGAGGATACTTTG
GTAGGGGTGGGCTTGTTTTTTTGTTTGAAGTACGGAGGAAGATACATACC
TTGAGTATGGTCAAGCCGGGCTTCATCTCGCTAGCCAGTTCATGCGGAGG
GAAAAGGTTGACCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCTCTGTTGTTGGTCACTTCGT
ACGACGGGGAGGATACTTTGGTAGGGGTGGGCTTGTTTTTTTGTTTGAAG
TACGGAGGAAGATACATACCTTGA
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