mRNA_L-elsbetiae_contig9503.18491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9503.18491.1
Unique NamemRNA_L-elsbetiae_contig9503.18491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: D7G848_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G848_ECTSI)

HSP 1 Score: 701 bits (1810), Expect = 2.350e-243
Identity = 360/481 (74.84%), Postives = 393/481 (81.70%), Query Frame = 1
Query:    1 QRELDEMFDKLDASSPQLPTPQTSANTDPVLETALMAHQKEGLAWMVQRENNPDPNG------------------------LPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVDRLSGHEAGVTPVDVEARLGTLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYSFYTSCMYC 1371
            QRELDEMFDKLDA SPQLPT  TSANT+PVL  +LM HQKEGLAWMVQRENNPDPNG                        LPPFWEQRVEGGK VF+NTITCSSQPC+PA VHGGILSDDMGLGKTLQVI+LILAQPPAGTDY+ KV AVEANKRLKE  DRGE   PQE+E TPQ+KQE  AK+YKKLKK DLE+ELA+KGLDTKG K++LV RLS HEAG+TPVD   +LGTLV+CPMSV+ NWETQ AEHVK+GALDVY YHGG+RNQ+P FLA KDVVITTYDTLASDF+ASGGQKA E             RHGV  L  NR+VLDEAH  RNNKT KHKACLALSSR RWCLTGTP++NKPEDIGALFSFL LAPASNPRVF QAIGRP+RSG DAGLARLRVL+KSVCLRRTKS+L  K+PPKVVEIHRV+MD+ HREAYNTLFNSARAAFKAALA+GE+EV  S Y S + C
Sbjct:  190 QRELDEMFDKLDADSPQLPTANTSANTEPVLLASLMTHQKEGLAWMVQRENNPDPNGARLDDGKKXXXXXXGKGCQSHSSGLPPFWEQRVEGGKGVFHNTITCSSQPCRPASVHGGILSDDMGLGKTLQVISLILAQPPAGTDYVKKVLAVEANKRLKEALDRGETPPPQEKELTPQQKQEAVAKKYKKLKKADLERELAAKGLDTKGNKNDLVGRLSTHEAGLTPVDPSVKLGTLVVCPMSVIHNWETQFAEHVKEGALDVYAYHGGNRNQDPTFLATKDVVITTYDTLASDFSASGGQKALEEDVTAAVGGKPKRRHGVGGLGGNRVVLDEAHPFRNNKTNKHKACLALSSRYRWCLTGTPLINKPEDIGALFSFLHLAPASNPRVFLQAIGRPIRSGSDAGLARLRVLMKSVCLRRTKSVLSGKLPPKVVEIHRVQMDDGHREAYNTLFNSARAAFKAALADGEAEVM-SQYASVLEC 669          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A0G4IN94_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IN94_PLABS)

HSP 1 Score: 276 bits (707), Expect = 1.010e-79
Identity = 181/472 (38.35%), Postives = 252/472 (53.39%), Query Frame = 1
Query:    1 QRELDEMFDK-LDASSPQLPTPQTS-ANTDPVLETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVDRLSGHEAGVTP-----------------VDVEARLGTLVICPMSVLSNWETQLAEHVKDGA-LDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDF-----AASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRS-GDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEV 1338
            Q +LD MF++ L A++   P P T  +     L   L  +Q+ GL WM++RE   D   LP  WEQRVE G+ V+YN +  +S   +PA V GG+L DDMGLGKT+QVIAL+L    +G               L+++  +    AP   +P P        +  + ++  DL   L +KGL   G K  L++RL   E GV P                  D      TL++CP SVLSNWE Q+A HV+D   + V+ +HG  R  +  FL+K D+V+TTY TLA++F      ASG +K                  G++A++W R+VLDEAH IRN     HKAC AL ++ RW LTGTP+ N  +D+ +LF+FLRL P  +  ++   IGRPV S G    +A LRVL ++VCLRR KS +   +PP  VE H + +    RE Y+ L  ++R AF  AL  G+  V
Sbjct:  287 QADLDAMFEEALKANASIEPLPATDLSRVLACLNIKLFDYQERGLHWMLRRETCHD--ALPALWEQRVENGQQVYYNGVVNASYRSRPAAVLGGLLCDDMGLGKTIQVIALVLLHSNSG---------------LRKRISKHLGAAPVPVKPEPASSSGDVRRVIESMRVVDLRDLLRTKGLSASGNKKVLIERLI--ENGVHPDIEESQPAVSSPANDVKADNNGPSATLIVCPTSVLSNWELQIASHVRDEINIKVHVHHGAQRCSDTAFLSKFDIVLTTYGTLAAEFRSREKGASGSKKRGRD-------------EGLLAVSWRRVVLDEAHVIRNRTNQSHKACRALDAQFRWALTGTPLFNSADDVQSLFAFLRLPPVDDYSIWRTRIGRPVSSMGSPQAMALLRVLFQAVCLRRLKSTVNSDLPPITVEEHSLVLGSKQRELYDLLERASRMAFDIALRVGDDFV 726          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A830HVA9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVA9_9CHLO)

HSP 1 Score: 270 bits (689), Expect = 3.250e-77
Identity = 180/523 (34.42%), Postives = 254/523 (48.57%), Query Frame = 1
Query:    1 QRELDEMFDKLDASSPQLPTPQTSANTDPVLETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDY----------------IAKVRAVE---ANKRLKEQ-RDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASK-GLDTK-----------GVKSELVDRLSG--HEAGVTPVDVEA------------------------------------RLGTLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDF-----AASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHY 1344
            QRELD +FD+L         P       P L   L  HQ++G+AWM+ RE     N LPPF+E+RVE G  V+YN+ITCS+QP +P PV GG+L+DDMG GKT+Q +A +LA PP G  Y                +A+  A     A +RL E     G                   A     L     E ELA + G D K           G K+++  R+     E G  P                                         R GTL++ PM V+ NWE Q+ EHVK   L V  +HG  R+     L+  DVVIT+Y TL  +      A  GG+   +                V+++ W+R VLDEAH  RN +T   ++   + + +RWCLTGTP+ NK +D+  + +FLR AP  +  +F +A+ RP+R G D GLARLRV +K++ LRR K +LGD++PPK +++ +V +    R+AY+TL++SAR+   AA   G ++  Y
Sbjct:  204 QRELDALFDELSKQVDISNLPYDPQRDTPALTANLRKHQRDGVAWMLSRERQA-ANTLPPFFEERVERGTTVYYNSITCSTQPSRPPPVLGGLLADDMGNGKTVQTLATLLANPPPGVIYEGDNNTDEGDGDGDWNLAETAASVVSGAKRRLAEAFGSGGXXXXXXXXXXXXXXXXALPASLVDALAGASSEAELAKRTGADLKAMCKMAEVSPNGTKAKMASRIWKFIQENGGLPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDRRGTLIVAPMGVIDNWERQIEEHVKPNTLRVVIWHGADRHARAAELSTADVVITSYATLLGELDAVMAAREGGRPPPQGH--------------VLSIKWHRAVLDEAHVCRNRRTKSFQSICQIDATHRWCLTGTPLQNKADDVFGILAFLRCAPLGDWAIFNRAVSRPIRDGHDEGLARLRVQLKTLSLRRGKQVLGDELPPKTIKVQKVNLHGTTRDAYDTLYSSARSVVAAAFESGVAQKEY 711          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A0G4FGH3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGH3_9ALVE)

HSP 1 Score: 257 bits (656), Expect = 2.240e-72
Identity = 177/463 (38.23%), Postives = 234/463 (50.54%), Query Frame = 1
Query:   91 LETALMAHQKEGLAWMVQRE-------NNP--------------------DPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVDRLSGHEAGVTPVDVEARLGTLVICPMSVLSNWETQLAEHVKDGALDVYPYHG-GSRNQEPKFLAKKDVVITTYDTLASDFAASGG------QKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALS--SRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEV--HYSFYTSCM 1365
            L+  L AHQK G+ W+++RE       N P                    D   LP FWE+R E G+ V++N+IT SSQ   P PV GGI++DDMGLGKT+QVIA ILA P + +             R                         H  +  K+            K +            LSG   G  P        TLV+CP SVL+ WE QL EHV+ GAL V  YHG G +  + + L   DVV+TTY  L S+FAA         +K   XXX          +  +  L W R+VLDEAH IRN  T   KA   LS  +R RWC+TGTP+ N+ +D+ ALFSF+R  P S+  V+ +A+GRP++ GD   L+RLR+L++SV LRR KS +   +P K VEI +V  +  H EAY TLF+SA+AAF+AA A  +  V  +YS    C+
Sbjct:  341 LKVPLYAHQKLGVEWILRREKLSPADFNCPFVTERTEGEKKKXXXEAEKEDTPHLPAFWEKRKEMGRVVYFNSITNSSQINAPKPVAGGIIADDMGLGKTVQVIATILANPSSLSSXXXXXXXXXXGDR-------------------------HMGEGPKR-----------QKAVSAPXXXXXXXXSLSGS-IGPRP--------TLVVCPTSVLAGWEAQLDEHVQPGALRVVTYHGPGKQTLDQRDLRNADVVLTTYGVLTSEFAAVSADSPQSKEKXXXXXXPGKRKAVGGGQGLLFELEWRRVVLDEAHQIRNRNTKSFKAAQLLSDRARYRWCVTGTPLQNRADDVYALFSFIRSEPLSSLEVWQRAVGRPLQRGDLVALSRLRLLLQSVALRRKKSSVAAALPKKTVEIRKVRFEGPHFEAYRTLFDSAKAAFRAAAAVSDDAVLRNYSSVLECL 758          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A7R9Y7S4_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y7S4_9VIRI)

HSP 1 Score: 255 bits (652), Expect = 1.540e-71
Identity = 197/614 (32.08%), Postives = 276/614 (44.95%), Query Frame = 1
Query:    1 QRELDEMFDKLDASSPQLPTPQTSANTD-----PVLETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDY-------------------IAKVRAVEANKRLKEQRDRGELT----AP------QEREPTPQE-----------------------------------KQEHAAKRYKKLKKG---------------------------DLEKELASKGLDTK-----------------------GVKSEL-------VDRLSGHEAGVTPVDVEARL---------------------------------GTLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYSFYTSCM 1365
            QRELDE+FDKL +        Q  A+TD     P L ++L  HQK G+AWM+ RE    P+ LP F+E+R+E G+ VFYN++T +S   +P+PV GG+L+DDMG GKTLQ +A+IL+ PP G  Y                   IA  +  E +  +       EL     AP      +E     +E                                   K   AA+ +  L K                            D  +EL  + L T+                       G K  L       +D   G  A      V  RL                                 GTL++ P+SVL NW TQ+ EH+  G L V  +HG  R+     L + DVVIT+Y TL+ + A     +A+                GV+++ W+R VLDEAHT+RN +T   KA  AL +R RW LTGTP+ N   D+  + +FL   P + P++F +A+ RP+R GD AGLARLR+L+K++ LRR KS+LG ++PPK + + +V  D  HRE+Y+TLF+SAR A  AA+  G +  HY     C+
Sbjct:  301 QRELDELFDKLASE-------QEGASTDSFVEPPQLTSSLREHQKRGVAWMLSRERQA-PSVLPTFFEERLELGRQVFYNSVTSTSTTARPSPVFGGLLADDMGNGKTLQTLAVILSNPPTGVVYECPSATLSEAAQTPGHAAAIADAKGSEEDAPVPTATTSSELALSNFAPAFASTWREMFSVVREVCGRVASDSCDLQTALTLAQLRTLCQVSAVSKSGNKDALAARAWAALAKVGGPASLLEGASECQSNAPFIKTWVQMLDRARELWGRALSTERDLLLLKVNQLRELCVVSCVSKSGNKDALAARAWAALDAAGGTAALYAGNAVAPRLRELQPTAKRRKTSAQSTGRAKRLTTAPAAACARGTLIVAPVSVLENWATQIEEHIAHGTLTVVVWHGPGRHALAPRLREADVVITSYSTLSGELA---DHEAYLDACSLGAKPAPPP--GVLSVRWHRAVLDEAHTVRNRQTKAFKAVCALHARLRWALTGTPIQNSAGDVYGVLAFLGAQPLNEPQIFNRAVARPIREGDRAGLARLRLLLKTISLRRPKSVLGAELPPKTIVVQKVVFDPPHRESYSTLFDSARVAIAAAIELGTATEHYMSILECI 901          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A7S2WD97_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WD97_9STRA)

HSP 1 Score: 247 bits (630), Expect = 5.410e-71
Identity = 148/428 (34.58%), Postives = 220/428 (51.40%), Query Frame = 1
Query:   91 LETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVDRLSGH-EAGVTPVDVEARLGTLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEV--HYSFYTSCM 1365
            + T L   Q +G++WM+ RE     N LP FW +  E  +  + N +T +S P +P PV GGIL+D MGLGKTLQ+I+LI+  PP G  Y A      A+  +  + DR                          LK  +L+ EL    L T G K+ LVDRL    +   +    ++  GTLVI P  +L  W  Q+  HV +G L VY YHG +RN +  FL + DVV+TTY T++S+F  S                    + G + + W R++LDEAH +RN  T   KA  AL++ NRW +TGTP  N  +D  AL SFL+++P     ++ +AIGRP+  G    L  LRV + + CL+R K     ++PP  +E+ ++ +    +E Y+TL  +A+  F++A +  +  V  +Y     C+
Sbjct:  244 IPTQLYEFQVKGVSWMINREKEGLKN-LPVFWSEVFETNQIKYLNALTNASYPSRPHPVCGGILADQMGLGKTLQMISLIIHHPPGGVSYNAVSDQPSADDVMTNEIDR-----------------------IHSLKVAELKNELREANLSTTGKKAALVDRLCKFVKLKASSPKTQSPRGTLVIAPKGLLHTWANQIESHVANGVLKVYIYHGSTRNFDIGFLEQFDVVLTTYGTISSEFTES------------TDTIKRSRQSGPLNMKWWRVILDEAHIVRNRNTKSFKAVCALAAENRWAVTGTPFCNSLDDFQALLSFLKVSPVDKYALYKRAIGRPILEGSHNALRWLRVFIHTYCLKRNKET-ALQLPPMEIELQKLPISGHQKEVYDTLMGAAQCLFQSASSVSQELVMKNYMMILECI 634          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: UPI0004420A3D (helicase-like transcription factor n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI0004420A3D)

HSP 1 Score: 241 bits (616), Expect = 2.100e-67
Identity = 167/448 (37.28%), Postives = 242/448 (54.02%), Query Frame = 1
Query:   91 LETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAG--------TDYIAKVRAVEANKRLKEQRDRGELTAPQEREPT---PQEKQEHAAKRYKKLKKG-------DLEKELASKGLDTKGVKSELVDRLSG-HEAGVTP----VDVEARLGTLVICPMSVLSNWETQLAEHVKDGA-LDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKS--ILGD---KVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYS 1347
            + T L+ HQK+ LAWM+ RENN D   LPPFWE+R +     FYNTIT  ++  +P  V GGIL+DDMGLGKTL +IA+IL     G        TD + +     A   LK  +   +L A   +E +   P +      KR  + K         + E+++A K L TK  K++   R     +A V P    VD   R GTL+ICP+SVLSNW  QL +HV     L+ Y Y+G  R+++   L+K+D+V+TTY+ LA+D+   G     +                   L W R+VLDE HT+RN    + KA L L+++ RW LTGTP+ N  +D+ +L SFL+L P ++   + + I RPV  GD+ GL RL+ L+KS+ LRRTK+  + G    K+P + V I  + + +     Y+++ N ++AA     AEG    HY+
Sbjct:  232 VSTPLLPHQKQALAWMILRENNKD---LPPFWEERDD----YFYNTITNFAEKNRPENVLGGILADDMGLGKTLSMIAVILTNFHNGKPLPLEKRTDQLEEKYIPTAKNNLKASKCGLQLNASNSKEESDSLPSQSSRSCLKRIMEKKPQYTISSDTEPEQQIAQK-LKTKEKKTKPAARKRKLDDAPVQPKKNEVDKNVR-GTLIICPLSVLSNWIEQLEQHVDPNIQLNTYVYYGSERSKDLTVLSKQDIVLTTYNVLATDYGTRGNSPLHK-------------------LKWLRVVLDEGHTVRNPNAQQTKAVLDLNAQRRWILTGTPIQNSLKDLWSLLSFLKLKPFTDRAWWHRTIQRPVTMGDERGLKRLQSLIKSITLRRTKTSKVNGKPVLKLPERKVFIQHITLTDEESVIYHSVKNESKAAISRYFAEGNILAHYA 651          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A835Z8N6_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N6_9STRA)

HSP 1 Score: 244 bits (622), Expect = 2.400e-67
Identity = 200/615 (32.52%), Postives = 263/615 (42.76%), Query Frame = 1
Query:    1 QRELDEMFDKLDASSPQLPTPQTSANTDP--VLETALMAHQKE---------------------------------GLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGTDYIAKVRAVEAN--------------------------------KRLKEQRDRGE-----LTAPQEREP--------------TPQEKQEHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVD---RLSGHEAGVTPVDVEARLG----------------------------------------------------------------TLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQE--PKFLAKKDVVITTYDTLASDFA---ASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYSFYTSCMYC 1371
            Q+ELDE+FDKL   S +       A  D   +L   L  HQKE                                 GLA+M++RE NPDP+GLPPFWE        V    +  S+  C   P+              LQV+AL+L  PP G  Y A      A                                  R + QR   +     L A    +P               P    E  A+  + +K  +L+      G    G K  LV    +LSG      PV  EA  G                                                                TL++CPMSVL+NWETQ   H++DGAL V  YHG  R +      L + D+VITTY TLA++F    A GG  A                  +++  W+R+VLDEAH IRN +T  HKAC AL +R RWC+TGTP+ NKP DIG+L SFL+L P S+  +F ++I  P+  GD  GL+RLRVL++S+CLRRT ++L D VPPK +E+H +++DEAHRE Y+ L  SA  AFK AL+ GE  V  S Y+S + C
Sbjct:  185 QQELDEIFDKLLVVSEEDAAAAVKAGEDASQLLNVPLFPHQKERSDAEAGMRPMPLKTTSLSVCCATFVVCCALRQGLAYMLRREKNPDPSGLPPFWE--------VLALMLRISNFNCDSPPL------------LVLQVLALMLVNPPTGVTYAANGDTETAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAADVSRFRSQRHNMKFSSRALFANLNAKPWTACAAAASAAFSALPTATIELLAE-LQHMKVANLKSRAKEVGAPVSGTKDVLVHNILKLSGK-----PVTPEAYAGSMETPAKRRKVLADIARTQXXXXXXXXXXXXXXXTRAKKERAATAAIAAXXXXXXANDDSIGRATLIVCPMSVLANWETQALSHIRDGALRVCTYHGAGRAEMFGDGELGQMDLVITTYGTLAAEFDGGDAEGGGSAVPAKRKRGASQV------LLSTDWHRVVLDEAHVIRNPRTKMHKACAALKTRRRWCVTGTPLQNKPADIGSLLSFLQLPPVSDAGIFKRSISGPIMRGDLDGLSRLRVLLRSLCLRRTMALLADHVPPKTIEVHTLKLDEAHRETYDVLHKSASTAFKLALSVGEGAVM-SQYSSVLEC 766          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: A0A2D4F025_MICCO (Uncharacterized protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4F025_MICCO)

HSP 1 Score: 233 bits (593), Expect = 2.050e-66
Identity = 163/444 (36.71%), Postives = 232/444 (52.25%), Query Frame = 1
Query:   97 TALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQPPAGT--------DYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELASKGLD----------TKGVKSELVDRLSG-HEAGVTPV--DVEARLGTLVICPMSVLSNWETQLAEHVKDGA-LDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKS--ILGD---KVPPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYS 1347
            T L+ HQK+ LAWM+ RENN   N LPPFWE+R      +FYNTI   ++  +P  V GGIL+DDMGLGKTL +IA+IL     G         D + +     A K L+      +L A   +E +       +++ Y K   G   K   S G +          TKG K +   R     +A V P   +V+   GTL+ICP+SVLSNW  QL +HV     L+ Y Y+G  RN++   L+K+D+V+TTY+ LA+D+         +                   L W RIVLDE HTIRN    + KA L L+++ RW LTGTP+ N  +D+ +L SFL+L P ++   + + I RPV  GD+ GL RL+ L+KS+ LRRTK+  + G    K+P + V I  + + +     Y+++ N  +AA      EG    HY+
Sbjct:   84 TPLLPHQKQALAWMILRENN---NDLPPFWEERNN----LFYNTIIHFAERNRPENVLGGILADDMGLGKTLTMIAVILTNFHNGKPLPLEKKIDQMEEKHIPTAQKDLQAPNCGLQLNASNSKEESDS-LPSQSSRSYPKRVMGKKSKCTISSGAENEQEVAEQIKTKGKKPKSRARKRKLDDAPVQPKKNEVDNVRGTLIICPVSVLSNWIDQLEQHVDPNIQLNTYVYYGSERNKDLTVLSKQDIVLTTYNVLATDYGTRDNSPLHK-------------------LKWLRIVLDEGHTIRNPNAQQTKAVLDLNAQRRWILTGTPIQNSLKDLWSLLSFLKLKPFTDRLWWQRTIQRPVTMGDERGLKRLQSLIKSITLRRTKTSKVNGKPVLKLPERKVFIQHITLTDEENAVYHSVKNETKAAISRYFTEGSVLTHYA 500          
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Match: UPI0007045E53 (helicase-like transcription factor isoform X3 n=1 Tax=Myotis brandtii TaxID=109478 RepID=UPI0007045E53)

HSP 1 Score: 236 bits (603), Expect = 1.600e-65
Identity = 159/451 (35.25%), Postives = 236/451 (52.33%), Query Frame = 1
Query:   91 LETALMAHQKEGLAWMVQRENNPDPNGLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQVIALILAQ----PPAGTDYIAKVR-------------------AVEANKRLKEQRDRGELTAPQEREPTPQEKQEHAAKRYKKLKKGDLEKELA-SKGLDTKGVKSELVDRLSGHEA--GVTPVDVEARLGTLVICPMSVLSNWETQLAEHVK-DGALDVYPYHGGSRNQEPKFLAKKDVVITTYDTLASDFAASGGQKAFEXXXXXXXXXXXXXRHGVMALAWNRIVLDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRLAPASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKS--ILGDKV---PPKVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYS 1347
            +ET+L+ HQK+ LAWM+ REN+ +   LPPFWEQR +    ++YNTIT  S+  +P  VHGGIL+DDMGLGKTL  IA+IL       P   + I K +                   + + ++  K  R  GE +    +  +   K E ++ R K+ K      E + S+ ++T    SEL  ++ G  A  G    DVE    TL+ICP+SVLSNW  Q  +H+K D  L+ Y Y+G  R ++P  L+K+D+V+TTY+ L  D+   G                      + ++ W R++LDE H IRN    + KA L L +  +W LTGTP+ N  +D+ +L SFL+L P  +   + + I RPV  GD+ GL RL+ L+K++ LRRTK+  + G  V   P + V I  + + +  R+ Y ++ N  R        EG    HY+
Sbjct:  237 IETSLLPHQKQALAWMISRENSKE---LPPFWEQRSD----LYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGKPLPVERIKKNQLKKECNINNGSMKFGRNNTSEKTDELTKGSRCSGEPSISDVKGKSKYTKSELSSSRSKRRKTAVQYTESSDSEEIET----SELPQKVKGASALEGSKKTDVERPTTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHDYGMKGDSP-------------------LHSIRWLRVILDEGHAIRNPNAQQTKAVLHLEAERKWILTGTPIQNSLKDLWSLLSFLKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKVKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRDTIGRYFNEGTVLAHYA 657          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9503.18491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G848_ECTSI2.350e-24374.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4IN94_PLABS1.010e-7938.35Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A830HVA9_9CHLO3.250e-7734.42Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A0G4FGH3_9ALVE2.240e-7238.23Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7R9Y7S4_9VIRI1.540e-7132.08Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
A0A7S2WD97_9STRA5.410e-7134.58Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
UPI0004420A3D2.100e-6737.28helicase-like transcription factor n=1 Tax=Python ... [more]
A0A835Z8N6_9STRA2.400e-6732.52SNF2 family N-terminal domain-containing protein n... [more]
A0A2D4F025_MICCO2.050e-6636.71Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
UPI0007045E531.600e-6535.25helicase-like transcription factor isoform X3 n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9503contigL-elsbetiae_contig9503:946..7622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score695.7
Seed ortholog evalue1.5e-197
Seed eggNOG ortholog2880.D7G848
Preferred nameHLTF
KEGG koko:K15711
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Ec32 ortholog descriptionSNF2-related and RING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-12_001510.1
Exons10
Model size1371
Cds size1353
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817017.9655957-CDS-L-elsbetiae_contig9503:945..10951622817017.9655957-CDS-L-elsbetiae_contig9503:945..1095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 946..1095 -
1691683986.2319047-CDS-L-elsbetiae_contig9503:945..10951691683986.2319047-CDS-L-elsbetiae_contig9503:945..1095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 946..1095 -
1622817017.9768088-CDS-L-elsbetiae_contig9503:1558..16781622817017.9768088-CDS-L-elsbetiae_contig9503:1558..1678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 1559..1678 -
1691683986.2440877-CDS-L-elsbetiae_contig9503:1558..16781691683986.2440877-CDS-L-elsbetiae_contig9503:1558..1678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 1559..1678 -
1622817017.9907496-CDS-L-elsbetiae_contig9503:2827..29621622817017.9907496-CDS-L-elsbetiae_contig9503:2827..2962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 2828..2962 -
1691683986.2521765-CDS-L-elsbetiae_contig9503:2827..29621691683986.2521765-CDS-L-elsbetiae_contig9503:2827..2962Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 2828..2962 -
1622817018.0016427-CDS-L-elsbetiae_contig9503:3303..34951622817018.0016427-CDS-L-elsbetiae_contig9503:3303..3495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 3304..3495 -
1691683986.2653193-CDS-L-elsbetiae_contig9503:3303..34951691683986.2653193-CDS-L-elsbetiae_contig9503:3303..3495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 3304..3495 -
1622817018.0120986-CDS-L-elsbetiae_contig9503:3971..40341622817018.0120986-CDS-L-elsbetiae_contig9503:3971..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 3972..4034 -
1691683986.2762554-CDS-L-elsbetiae_contig9503:3971..40341691683986.2762554-CDS-L-elsbetiae_contig9503:3971..4034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 3972..4034 -
1622817018.0287807-CDS-L-elsbetiae_contig9503:4575..47671622817018.0287807-CDS-L-elsbetiae_contig9503:4575..4767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 4576..4767 -
1691683986.2855031-CDS-L-elsbetiae_contig9503:4575..47671691683986.2855031-CDS-L-elsbetiae_contig9503:4575..4767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 4576..4767 -
1622817018.045115-CDS-L-elsbetiae_contig9503:5093..51741622817018.045115-CDS-L-elsbetiae_contig9503:5093..5174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 5094..5174 -
1691683986.2974882-CDS-L-elsbetiae_contig9503:5093..51741691683986.2974882-CDS-L-elsbetiae_contig9503:5093..5174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 5094..5174 -
1622817018.0608888-CDS-L-elsbetiae_contig9503:6273..64111622817018.0608888-CDS-L-elsbetiae_contig9503:6273..6411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 6274..6411 -
1691683986.3068929-CDS-L-elsbetiae_contig9503:6273..64111691683986.3068929-CDS-L-elsbetiae_contig9503:6273..6411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 6274..6411 -
1622817018.0769691-CDS-L-elsbetiae_contig9503:6997..71281622817018.0769691-CDS-L-elsbetiae_contig9503:6997..7128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 6998..7128 -
1691683986.3164046-CDS-L-elsbetiae_contig9503:6997..71281691683986.3164046-CDS-L-elsbetiae_contig9503:6997..7128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 6998..7128 -
1622817018.0881464-CDS-L-elsbetiae_contig9503:7453..76041622817018.0881464-CDS-L-elsbetiae_contig9503:7453..7604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 7454..7604 -
1691683986.325821-CDS-L-elsbetiae_contig9503:7453..76041691683986.325821-CDS-L-elsbetiae_contig9503:7453..7604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9503 7454..7604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817018.0991118-UTR-L-elsbetiae_contig9503:7604..76221622817018.0991118-UTR-L-elsbetiae_contig9503:7604..7622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9503 7605..7622 -
1691683986.3376653-UTR-L-elsbetiae_contig9503:7604..76221691683986.3376653-UTR-L-elsbetiae_contig9503:7604..7622Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9503 7605..7622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9503.18491.1prot_L-elsbetiae_contig9503.18491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9503 946..7604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9503.18491.1

>prot_L-elsbetiae_contig9503.18491.1 ID=prot_L-elsbetiae_contig9503.18491.1|Name=mRNA_L-elsbetiae_contig9503.18491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=451bp
MFDKLDASSPQLPTPQTSANTDPVLETALMAHQKEGLAWMVQRENNPDPN
GLPPFWEQRVEGGKAVFYNTITCSSQPCQPAPVHGGILSDDMGLGKTLQV
IALILAQPPAGTDYIAKVRAVEANKRLKEQRDRGELTAPQEREPTPQEKQ
EHAAKRYKKLKKGDLEKELASKGLDTKGVKSELVDRLSGHEAGVTPVDVE
ARLGTLVICPMSVLSNWETQLAEHVKDGALDVYPYHGGSRNQEPKFLAKK
DVVITTYDTLASDFAASGGQKAFEEDEAAAAGGKRKRRHGVMALAWNRIV
LDEAHTIRNNKTMKHKACLALSSRNRWCLTGTPMVNKPEDIGALFSFLRL
APASNPRVFTQAIGRPVRSGDDAGLARLRVLVKSVCLRRTKSILGDKVPP
KVVEIHRVEMDEAHREAYNTLFNSARAAFKAALAEGESEVHYSFYTSCMY
C
back to top

mRNA from alignment at L-elsbetiae_contig9503:946..7622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9503.18491.1 ID=mRNA_L-elsbetiae_contig9503.18491.1|Name=mRNA_L-elsbetiae_contig9503.18491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6677bp|location=Sequence derived from alignment at L-elsbetiae_contig9503:946..7622- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGGGAGCTCGACGAGATGTTCGACAAGCTCGACGCCAGCTCGCCGCA GCTCCCGACGCCGCAGACGTCCGCCAACACCGACCCCGTGCTCGAGACCG CCCTCATGGCTCACCAGAAGGAGGGCCTGGCGTGGATGGTGCAGAGGGAG AACAACCCCGACCCGAACGGTCAGTTTGACTACACAAAGGGAGCGTGAAG CTTCGAGGCTTTGCTCTACATACACAGCAGTAGGGGATTTGTTTTGTTTT GGGCGGTGAGCATGGTGACGCTACTGGCTGCTGTGGGTCGAAGCTTCCAG GACATATTTTATCGAGGCCAATCAGGCGTGTGTGCTGTACCGGTATGTGC TGTATGTGCTGACTTGTCGTCCACAATACAGTCGTTTCCCAGCACGGAGT ATGTGAAGGTGCTGGGAGGAGTCGGAGAGGGTCGGAGCAGGACAACGACA GCAACCCCCCCCCCCCCCACCGTCCCGTGCCGCCGCGCGCGCAGGCCTCC CCCCCTTCTGGGAACAGCGCGTGGAAGGGGGCAAGGCCGTGTTCTACAAC ACAATCACCTGCTCCTCGCAACCTTGCCAGCCCGCCCCCGTGCATGGGGG CATTCTCAGCGACGACATGGGTCTGGTGAGAATAAGAGAGGGGAAGCAGG CGCAGCCGGGGCTGTTGTTGTCGTTGTTGTTGTCGTCCTCACTTGGAAGC CGTTACGAGACCTCAAAACGACCCCCGTCTCGGCAAGTTAGCGCTCGCGA CCCCACAGAGTCGATTCCTTTCCACGACGGTTGATGGCATGTTCGTGACT CCCCCTCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGA GGCAGGGGGCCAGTGGGGCAGACGACGAATAAGCCAATAGTGGGAGGGGG GGGGGGGGATTACACACAAGCACTGCTGAAAATACATCGAACTTCAAAAG ACGTACATAAATTTCGCAGAAGCAAGAAACACAACGGAAAACACGCCTCC TTCCCTTCCGGTCGCAACGTTGCAACGCGAAAACCCCTCCCAGCACAACT CGTGTGTGTATGAATATGACAGATACATACATATTCCTGTGGAAGTGGTA TTGCAGATATTGTACCACCAGATTAGCTCGCTGAGCGGAATGTATATACA ATATATATGCGGTGCCTCTCTCGGCACGCGGCGGCGCCCCTTGGCCGGTC TCGTTCCCCAGGGCAAGACGCTCCAGGTGATCGCTCTCATCCTCGCGCAG CCCCCGGCGGGGACCGACTACATCGCCAAAGTTCGCGCTGTCGAGGCGAA CAAGAGGCTCAAGGAGCAGCGGGACCGGGGCGAACTCACCGCTCCCCAGG TTCGGTGTTTACGTCCGTTATTTGGCGCTTGACGTTTTGTGTGTGTGCGT GTGTGTGTGTTGTGATGGTTGGGTTGGTTGTTGTTGACGCATGCCATGCG TCCCGCTTGCCCTTTTGGTTTCGTTTTGGTTTGTAGAAGAGGAGGAAAGA CCCCCCCCCCCCAGTCAAAGACCCCCCCTCCGGTCAAGCTCACTGTCGAT TCCAGTGTGTGTGTGTGTGCGCGCGCGCGCGTGTTCTTTTACATCATTTA CCGCATGGCTTTTGGTTGGCGGGCTCTACTTTGCTGGTCTCGAGAATGTT TTGCCTCCATCTAGTCGCTCTGTTCGATGATAAATTACTTGGTTTACTCT GGTGTGAATGCGCTGCGAAACTTTCTGTCAGTAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGATAGTTCTGTTTCTGTTCCGTGTGTCCA AAGCACGAAGATGCAGCACAGCGCTGATCTTACGTAAATACCCGGGCGTG AAGGCATGGTATAGCATGGTGTCGCACGCGACTGACCGGTTACGCCATGG TTTTTGCCTGTTGCGCCACACATGACGTACATCGTACACGTAGCGTTGCC GACAAGAGAAGGCGCCACAGTACCATAGGTGACACAAGATACCACACCCC CTGGACCGAATTTTAGAGCTCCATTACTCCGTAACGAAGAAGGTGTCAGC ACCAAACGACAATTTTTCGGACAGCCCTTGACTAGATCTTTCCAACGCCA CCCTTTTTGGCACTGGCACTCTTCTTGCTGGGGAGGAATCGAGCTTTGAA AATCTGTCCAGGAGGTGTGGTATCTTGTGTCACCTACGGTAACGCGGCCG CCCATCGAGCCAGCGCCCTGGCAAAATATGCTACACGCCAACAGCTACCC GGAGTTGCTTGATCCTCAAATACATGTGTAGCTGATACATAAACGTAGAA GTATATATGTACAGATCATAACATACATAGATGCCCGTCAAGTATTTCAT GCTCTATGTTTTCCTCGCCGGCAGACACGAAAGAAACGCGGGGGCCGTTT TCTACCATGTGTAGCTCATCTCCCCTTGCGTTTTTTGTCGCGCAGGAGGA GCGGGAACCCACGCCTCAGGAGAAGCAGGAGCACGCGGCCAAGAGATACA AGAAGCTCAAGAAGGGTGACCTTGAAAAGGTAAGGCGCGGTTCCGCGACG AGACGGGCGGGTGGCACGGACGGTACTCTTCCCCTTGAAGAGCCTCGAAG AGGCCACCGCGGCGGACAAAAGTTGTCCCGTAAGATCGATCCCACCCCCC CCGTCTTTGTCGTCGTCGTCGTCGTCGTGCCTGGCCTGATAGGAACAGCG GCGGTGACGTATACACCACTATACTGCCTGCCTCCCTCTTATTTTTGTCG TCTCCTGCCTGATACCTGAGGCGGTGGTGCCTGGTGTGTGTGTGTTTTGT GGCCTGAACGCACTTAAAACCTGCGCCGCTCGGTTGGACTACTGTCGAAT CGTAGGAGCTGGCGTCCAAGGGCCTGGACACCAAGGGCGTCAAGAGCGAG CTCGTGGATCGGCTGTCAGGGCATGAGGCCGGGGTTACCCCCGTCGACGT CGAAGCCCGGCTGGGCACGCTGGTGATTTGCCCGATGTCGGTGCTGAGCA ACTGGGAGACTCAGCTCGCGGAGCACGTCAAGGACGGGGCGCTCGACGTG AGAGATGAGAGAGAGAGAGAGACAGTCACAAAAGGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGACATGTATTCACTCGCGCTCAGTTGATGAGC AGAGAGCGTCAAAACTAAACCATCACCGCGTACAAAATTTTGAACAATAT TGAAACACGCACACACAGAGAAAGAGCGAGAGGCGCGGGGGGGGTCTTGA GTTGATTTGAAGAGCTTCGCGGCTGCGCTGAAAAAAGGGCTCTTAGCGTC AGCAGGACAGAGGTTTTGCCGAGAGAGAGGCTCCCCAAGAGTTCAGAAAG AGTCGCTTTAGTTCCATCAATCCGGCCATCTGATTTTTCGTCGTCTCGCA TCTGGAAACGACAACGAATTAATTTTGTCTGGCGCGCTTGACTCTTGGGC GCGCGAGGCTTTCCGCGTGCTTTCCTCTTTTGTGGTGCAAACAACAAGGT GCTCTCCGTTTTGATGTCCTCTGTTGGTTTGTGGGCGTGAATATCAAGTA TTGTCTGACGGGGCGTTCATCCGACCAACCGACGGTAGGTCTACCCGTAC CACGGAGGCAGCAGGAACCAGGAACCGAAGTTCTTGGCGAAGAAAGATGT GGTGAGTGGGCGGGCCAAACGCACAAATGTGCTTGGCTGTTGGGGGGGGG GGGGGGGGGAATAAGGCAAGGGCGTGAACCCGCCGTTACAGGCAGTATGT TTTCATCCCAACCAAGCCCCGTAGTACGCGAGTACAATAGCGCCTGTGGT GGTGAGGGTCGCAGGGCGAAAGTACCGCTGCGTTTTTTTTTTTGCTGGAT TAGTATGTCGCCTTTTTCAGCAGCTACGGCGGCGGCGGCTATTATCGCGA TGGCCATCGCTACGGTTTTACTTGTATCTGTCGATGGTCGTTTTAACCTT GGCTGCAGGTGTGCTGATCAGTTATCGCTGTCTGTCTGTCTTGTCTGTCT GTATTGCGTTGATGCGGAATGGCTGTGTGTACCGTCACCGCCGCCACTTG GCCAAGGTGACCACCACCTACGACGACACCGCAGCCCTAACCCGAACCCC GACCGCAACCTCAACCCGAACCCCAAGGTGATTACCACGTACGATACTCT GGCCAGCGACTTTGCGGCGAGCGGGGGGCAGAAGGCGTTCGAGGAAGACG AGGCCGCGGCCGCCGGCGGGAAGCGCAAGCGTCGGCACGGCGTGATGGCC CTCGCCTGGAACCGCATCGTCCTCGACGAGGCTCACACCATCAGGAACAA CAAGACGATGAAGCACAAGGTCCGCCGCTGCTACTGCTGCCGCTGCTGCT GCCGCTGCTGCTCCCGTTGCTGCTGCCGCTGCTGCTGCTGTTGCTCCTGC TGCTCCTGCTCCTGCTTGATGTTGTTTTTGGTTGTGGTAGTGGTGCTGCT CATGTTGTTTGTGGTGATGGTGGTGGTGGTGCTTATGTGGTTGTTGTTAT TGGTGGTGGTGGTGGTGGTGCTGCCGCTGTTGCTGTCGCTGCCGCTGCTG CTGTGGGATGAGAGCGGGCCGAAGAGGACAGAAACGAGAAACGCAGCGAA AATGATCTGATCACCCTCCTCGGTTGTTTTGAATTGCTTTTCTGGTATTC GGCGGCACAGGCGTGCCTAGCACTTTCGTCGCGGAACCGCTGGTGCCTCA CTGGCACTCCCATGGTCAACAAGCCCGAGGACATCGGCGCCCTCTTCTCC TTCCTTCGCCTGGCCCCCGCCTCCAACCCGAGAGTGTTTACGCAGGTCGG CGTCTTAACTGCCTCTTTTTTCGTTGTGCGTGTTGTGGGGTACCATATAT ATTTGTTTGTTTTGTTCCGCGTGATTATGTTTGATGTTATGTGGCGATTT CGAGTCTTGGCGTCCTGCTTTTTGTTGTGTGGATTTGTGCGTGTGTGTGT TTCACGTGCGTGCGTGGCTTTTTTTAGCCCCAGGCTATATCGGGCGAGTT TTTATTTATTTCTGCTCTGCGAATTGAACGAACACACGAGGGCCCCTGCG TGCGTGCGTAGCTTCTTACCCCGGGCTATATTGGGCGAGCTTTTTTGTTG CCTGTTTTCTTCTCTAGACCGGACCGACGCATACGCGAGGACCCCTACGT GCGTGCGTCGCCTCTGAACCCCGGGCTACATCGGGCAAGCTTTATTTTAT TATATTTTCCTCTCCGATTGGATGAACTCAATCAAACACACGAGGACCCC CTCCGCAGCATCTCTTCCATGAATCACCTCTGTGCTGTTAGATAACCAGG CCACCGTTAAAAATGAACTCTACCAGTACTTTGGGTAAGCGGTGAAGCCG CGTTGGTCGCGGTGCAGCCGCTACCACCGCCCCCCGCCCCCCCCGGCTGG TGAGGGGACCCCGCCGGAGGTTATCTAACAGCACGCACCCATGAGTCACC TCGACGTGACGGGACGCACCAGGTCACTTTTACTGCTGTCACTACACAGG ATGCCACCACCTAAACCTCCTATTTTGAGCGAGGCTCGGATTCGTATTTC TCTGTGGGGAACCAACTGTCTATGTATTGCTTTTATATAGGTTTCAGTGT GGGGGTTCTTATCCGGGCGTCTCAAATGTGAGCAAATTCTTATATTTTGA ACTATTTTGGCCTGGATCTATCAAGTCCCAAGTTCTGGACTAGACATGCT ACACTGCTGCGAGATGAAGATGCCACCACGCAAGTTCACCTCTCGCGGCG TCACGAACCTTTTCATACGTTTGTGTTTTTTGTAGTCGTTCGGGAGGAGA TAATTGCCATTGTATATGCGCGCGTGTTGCCATCGTGTAGCGTTTACTGC GTTGCGTGTTCGCGAGCCAGTCACGAGGCAAGGCAGCGCCTCCAAATCCC CGCCATTCCCGCCATTCTGTTTGACGCGTGTGTTTGCGCGCCAGGCCATC GGGCGACCGGTTCGGTCGGGCGACGATGCTGGACTGGCGCGGCTGCGGGT GCTCGTCAAGAGCGTCTGCCTGAGGAGGACCAAGTCCATTCTCGGCGACA AGGTCCCTCCCAAGGTACTGCTACAGCTGCTGCTTCCGCTGCTGCTGTAC TGCTGCTGGGGTATTCTAATGACTCGTTGTTGCTTGTGACGCTTGATTGA TTTCACGGCGAACAAATAGAGAGCAAGCTCGCTCTGCTGCTGTTCTGCTG CTGCTGTGCTGCTGTGCTGCTGTGCTGCTGTGGATCTTGGTTGCTTTCAC GGCGAACAAATAAAAAGCAAGCACGCTCTGCTGCTGCTACTGCTGTTCTG CTGCTGTTCTGCTGCTGTTCTGCTGCTGTGCTGTTGTGGATCTTGGTTGC TTTTACGGCGAACAAAAAGAGAGCAAGCACGCGCTCCATGCCCCTTTTCC TCTATCCTCACCTTTCCCCCCCTAAGTCCCTTGTTGCCCTCCCCTCCCCC CCCCCTACGGACCACCCCCTCTCGCACCGTTCTCGCGTCTCGTGTGGGCC GCTTGGTTGATCGCGCCCGCCTCTCAGGTGGTGGAGATCCACCGTGTTGA GATGGACGAGGCGCACCGCGAGGCGTACAACACGCTCTTCAACAGCGCCA GGGCGGCGTTCAAAGCGGCCCTAGCCGAGGGAGAGTCAGAGGTGCATTAT TCATTTTATACTTCATGTATGTATTGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9503:946..7622-

>mRNA_L-elsbetiae_contig9503.18491.1 ID=mRNA_L-elsbetiae_contig9503.18491.1|Name=mRNA_L-elsbetiae_contig9503.18491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2706bp|location=Sequence derived from alignment at L-elsbetiae_contig9503:946..7622- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGACAAGCTCGACGCCAGCTCGCCGCAGCTCCCGACGCCGCAGAC
GTCCGCCAACACCGACCCCGTGCTCGAGACCGCCCTCATGGCTCACCAGA
AGGAGGGCCTGGCGTGGATGGTGCAGAGGGAGAACAACCCCGACCCGAAC
GATGTTCGACAAGCTCGACGCCAGCTCGCCGCAGCTCCCGACGCCGCAGA
CGTCCGCCAACACCGACCCCGTGCTCGAGACCGCCCTCATGGCTCACCAG
AAGGAGGGCCTGGCGTGGATGGTGCAGAGGGAGAACAACCCCGACCCGAA
CGGCCTCCCCCCCTTCTGGGAACAGCGCGTGGAAGGGGGCAAGGCCGTGT
TCTACAACACAATCACCTGCTCCTCGCAACCTTGCCAGCCCGCCCCCGTG
CATGGGGGCATTCTCAGCGACGACATGGGTCTGGCCTCCCCCCCTTCTGG
GAACAGCGCGTGGAAGGGGGCAAGGCCGTGTTCTACAACACAATCACCTG
CTCCTCGCAACCTTGCCAGCCCGCCCCCGTGCATGGGGGCATTCTCAGCG
ACGACATGGGTCTGGGCAAGACGCTCCAGGTGATCGCTCTCATCCTCGCG
CAGCCCCCGGCGGGGACCGACTACATCGCCAAAGTTCGCGCTGTCGAGGC
GAACAAGAGGCTCAAGGAGCAGCGGGACCGGGGCGAACTCACCGCTCCCC
AGGGCAAGACGCTCCAGGTGATCGCTCTCATCCTCGCGCAGCCCCCGGCG
GGGACCGACTACATCGCCAAAGTTCGCGCTGTCGAGGCGAACAAGAGGCT
CAAGGAGCAGCGGGACCGGGGCGAACTCACCGCTCCCCAGGAGCGGGAAC
CCACGCCTCAGGAGAAGCAGGAGCACGCGGCCAAGAGATACAAGAAGCTC
AAGAAGGGTGACCTTGAAAAGGAGCGGGAACCCACGCCTCAGGAGAAGCA
GGAGCACGCGGCCAAGAGATACAAGAAGCTCAAGAAGGGTGACCTTGAAA
AGGAGCTGGCGTCCAAGGGCCTGGACACCAAGGGCGTCAAGAGCGAGCTC
GTGGATCGGCTGTCAGGGCATGAGGCCGGGGTTACCCCCGTCGACGTCGA
AGCCCGGCTGGGCACGCTGGTGATTTGCCCGATGTCGGTGCTGAGCAACT
GGGAGACTCAGCTCGCGGAGCACGTCAAGGACGGGGCGCTCGACGAGCTG
GCGTCCAAGGGCCTGGACACCAAGGGCGTCAAGAGCGAGCTCGTGGATCG
GCTGTCAGGGCATGAGGCCGGGGTTACCCCCGTCGACGTCGAAGCCCGGC
TGGGCACGCTGGTGATTTGCCCGATGTCGGTGCTGAGCAACTGGGAGACT
CAGCTCGCGGAGCACGTCAAGGACGGGGCGCTCGACGTCTACCCGTACCA
CGGAGGCAGCAGGAACCAGGAACCGAAGTTCTTGGCGAAGAAAGATGTGG
TCTACCCGTACCACGGAGGCAGCAGGAACCAGGAACCGAAGTTCTTGGCG
AAGAAAGATGTGGTGATTACCACGTACGATACTCTGGCCAGCGACTTTGC
GGCGAGCGGGGGGCAGAAGGCGTTCGAGGAAGACGAGGCCGCGGCCGCCG
GCGGGAAGCGCAAGCGTCGGCACGGCGTGATGGCCCTCGCCTGGAACCGC
ATCGTCCTCGACGAGGCTCACACCATCAGGAACAACAAGACGATGAAGCA
CAAGGTGATTACCACGTACGATACTCTGGCCAGCGACTTTGCGGCGAGCG
GGGGGCAGAAGGCGTTCGAGGAAGACGAGGCCGCGGCCGCCGGCGGGAAG
CGCAAGCGTCGGCACGGCGTGATGGCCCTCGCCTGGAACCGCATCGTCCT
CGACGAGGCTCACACCATCAGGAACAACAAGACGATGAAGCACAAGGCGT
GCCTAGCACTTTCGTCGCGGAACCGCTGGTGCCTCACTGGCACTCCCATG
GTCAACAAGCCCGAGGACATCGGCGCCCTCTTCTCCTTCCTTCGCCTGGC
CCCCGCCTCCAACCCGAGAGTGTTTACGCAGGCGTGCCTAGCACTTTCGT
CGCGGAACCGCTGGTGCCTCACTGGCACTCCCATGGTCAACAAGCCCGAG
GACATCGGCGCCCTCTTCTCCTTCCTTCGCCTGGCCCCCGCCTCCAACCC
GAGAGTGTTTACGCAGGCCATCGGGCGACCGGTTCGGTCGGGCGACGATG
CTGGACTGGCGCGGCTGCGGGTGCTCGTCAAGAGCGTCTGCCTGAGGAGG
ACCAAGTCCATTCTCGGCGACAAGGTCCCTCCCAAGGCCATCGGGCGACC
GGTTCGGTCGGGCGACGATGCTGGACTGGCGCGGCTGCGGGTGCTCGTCA
AGAGCGTCTGCCTGAGGAGGACCAAGTCCATTCTCGGCGACAAGGTCCCT
CCCAAGGTGGTGGAGATCCACCGTGTTGAGATGGACGAGGCGCACCGCGA
GGCGTACAACACGCTCTTCAACAGCGCCAGGGCGGCGTTCAAAGCGGCCC
TAGCCGAGGGAGAGTCAGAGGTGCATTATTCATTTTATACTTCATGTATG
TATTGTGTGGTGGAGATCCACCGTGTTGAGATGGACGAGGCGCACCGCGA
GGCGTACAACACGCTCTTCAACAGCGCCAGGGCGGCGTTCAAAGCGGCCC
TAGCCGAGGGAGAGTCAGAGGTGCATTATTCATTTTATACTTCATGTATG
TATTGT
back to top