mRNA_L-elsbetiae_contig9495.18477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9495.18477.1
Unique NamemRNA_L-elsbetiae_contig9495.18477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9495.18477.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.510e-16
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 EVLTSGQWAELLKAPLERAAAKGSRDLAQRLVRVGAQTGYALHAAVRRGHVDIVSDLVDSGASLVAKDTLG 213
            E+LTS Q AELL+A LE AAAKG++DLAQRLVR GA+ G ALH AV  GH +IVSDL++S ASL A D  G
Sbjct:    7 EILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDG 77
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BLAST of mRNA_L-elsbetiae_contig9495.18477.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.670e-14
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 EVLTSGQWAELLKAPLERAAAKGSRDLAQRLVRVGAQTGYALHAAVRRGHVDIVSDLVDSGASLVAKDTLG 213
            EVLT+  WAE+L+ PLE AAA+G+  L Q+L+R GA  G ALHAAVR GH ++V++L++ GA +  KDT G
Sbjct:   39 EVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTRG 109
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BLAST of mRNA_L-elsbetiae_contig9495.18477.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-7
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   10 TSGQWAELLKAPLERAAAKGSRDLAQRLVRVGAQTGYALHAAVRRGHVDIVSDLVDSGASLVAKDTLG 213
            T  +WA  LK PLE A   G RDLA  LVR GA+ G A++ A+  G  +++S L+D+GAS+ A D  G
Sbjct:   25 TPEEWAAWLKVPLEIAVRTGDRDLASMLVRGGAEAGTAVNEAIACGDTEVMSLLLDNGASVSATDAEG 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9495.18477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE2.510e-1666.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL12_ECTSI6.670e-1454.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYD0_ECTSI1.070e-747.06Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9495contigL-elsbetiae_contig9495:3948..4254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue7.3e-12
Seed eggNOG ortholog2880.D8LL12
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817016.420891-CDS-L-elsbetiae_contig9495:3947..42531622817016.420891-CDS-L-elsbetiae_contig9495:3947..4253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9495 3948..4253 +
1691683985.0804245-CDS-L-elsbetiae_contig9495:3947..42531691683985.0804245-CDS-L-elsbetiae_contig9495:3947..4253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9495 3948..4253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9495.18477.1prot_L-elsbetiae_contig9495.18477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9495 3948..4253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9495.18477.1

>prot_L-elsbetiae_contig9495.18477.1 ID=prot_L-elsbetiae_contig9495.18477.1|Name=mRNA_L-elsbetiae_contig9495.18477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
EVLTSGQWAELLKAPLERAAAKGSRDLAQRLVRVGAQTGYALHAAVRRGH
VDIVSDLVDSGASLVAKDTLGGTALHIAAQRGKTEMVQLMLLKGADKDAF
DR
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mRNA from alignment at L-elsbetiae_contig9495:3948..4254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9495.18477.1 ID=mRNA_L-elsbetiae_contig9495.18477.1|Name=mRNA_L-elsbetiae_contig9495.18477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=307bp|location=Sequence derived from alignment at L-elsbetiae_contig9495:3948..4254+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGTCCTCACATCGGGGCAGTGGGCGGAGTTGCTGAAGGCTCCACTCGA
GCGTGCCGCCGCCAAGGGCAGCAGAGACCTCGCACAGAGGCTGGTGAGGG
TAGGAGCACAGACTGGGTACGCCCTGCACGCGGCCGTTCGCCGCGGTCAT
GTAGATATTGTGAGCGACCTCGTGGACAGTGGAGCATCGCTCGTCGCGAA
GGACACGCTTGGGGGCACTGCTCTTCACATTGCTGCCCAACGGGGGAAGA
CGGAGATGGTGCAACTGATGTTGCTCAAGGGGGCTGACAAAGACGCGTTT
GACAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9495:3948..4254+

>mRNA_L-elsbetiae_contig9495.18477.1 ID=mRNA_L-elsbetiae_contig9495.18477.1|Name=mRNA_L-elsbetiae_contig9495.18477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig9495:3948..4254+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGTCCTCACATCGGGGCAGTGGGCGGAGTTGCTGAAGGCTCCACTCGA
GCGTGCCGCCGCCAAGGGCAGCAGAGACCTCGCACAGAGGCTGGTGAGGG
TAGGAGCACAGACTGGGTACGCCCTGCACGCGGCCGTTCGCCGCGGTCAT
GTAGATATTGTGAGCGACCTCGTGGACAGTGGAGCATCGCTCGTCGCGAA
GGACACGCTTGGGGGCACTGCTCTTCACATTGCTGCCCAACGGGGGAAGA
CGGAGATGGTGCAACTGATGTTGCTCAAGGGGGCTGACAAAGACGCGTTT
GACAGAGAAGTCCTCACATCGGGGCAGTGGGCGGAGTTGCTGAAGGCTCC
ACTCGAGCGTGCCGCCGCCAAGGGCAGCAGAGACCTCGCACAGAGGCTGG
TGAGGGTAGGAGCACAGACTGGGTACGCCCTGCACGCGGCCGTTCGCCGC
GGTCATGTAGATATTGTGAGCGACCTCGTGGACAGTGGAGCATCGCTCGT
CGCGAAGGACACGCTTGGGGGCACTGCTCTTCACATTGCTGCCCAACGGG
GGAAGACGGAGATGGTGCAACTGATGTTGCTCAAGGGGGCTGACAAAGAC
GCGTTTGACAGA
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