mRNA_L-elsbetiae_contig9469.18455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9469.18455.1
Unique NamemRNA_L-elsbetiae_contig9469.18455.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9469.18455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9469contigL-elsbetiae_contig9469:864..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size403
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9469.18455.1prot_L-elsbetiae_contig9469.18455.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9469 885..1235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.0123982-UTR-L-elsbetiae_contig9469:863..8841622817014.0123982-UTR-L-elsbetiae_contig9469:863..884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9469 864..884 +
1691683983.1702654-UTR-L-elsbetiae_contig9469:863..8841691683983.1702654-UTR-L-elsbetiae_contig9469:863..884Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9469 864..884 +
1622817014.038597-UTR-L-elsbetiae_contig9469:1235..12661622817014.038597-UTR-L-elsbetiae_contig9469:1235..1266Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9469 1236..1266 +
1691683983.1889822-UTR-L-elsbetiae_contig9469:1235..12661691683983.1889822-UTR-L-elsbetiae_contig9469:1235..1266Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9469 1236..1266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.0259802-CDS-L-elsbetiae_contig9469:884..12351622817014.0259802-CDS-L-elsbetiae_contig9469:884..1235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9469 885..1235 +
1691683983.1803372-CDS-L-elsbetiae_contig9469:884..12351691683983.1803372-CDS-L-elsbetiae_contig9469:884..1235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9469 885..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9469.18455.1

>prot_L-elsbetiae_contig9469.18455.1 ID=prot_L-elsbetiae_contig9469.18455.1|Name=mRNA_L-elsbetiae_contig9469.18455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MQVPRIDRNTPPLDRLRRTPLPLYYCCVYPHKGTVYIRFWEIETRYRSGG
GRQRALKVRVHKLACTMCSNGGDKTERGRRAMKSMQYVRTYTYIQCLVVW
IQIHRSHTPNEGRRAM*
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mRNA from alignment at L-elsbetiae_contig9469:864..1266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9469.18455.1 ID=mRNA_L-elsbetiae_contig9469.18455.1|Name=mRNA_L-elsbetiae_contig9469.18455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=403bp|location=Sequence derived from alignment at L-elsbetiae_contig9469:864..1266+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGAGATATCACTGCACAATGCAAGTGCCCAGGATAGATAGAAACAC
ACCACCACTCGATCGACTACGACGAACGCCACTACCACTATACTACTGCT
GTGTGTACCCTCACAAAGGTACTGTATACATACGTTTTTGGGAGATTGAA
ACAAGATATAGGTCGGGTGGAGGAAGGCAGAGGGCACTGAAAGTCCGAGT
GCATAAACTTGCATGTACCATGTGTAGTAATGGCGGCGACAAAACCGAAA
GAGGCAGACGTGCCATGAAGTCTATGCAGTATGTACGTACGTATACATAC
ATACAATGCCTTGTTGTTTGGATCCAGATACATAGATCCCACACACCAAA
CGAAGGCAGACGTGCCATGTAGTCTAGATGCAGTATGTCCACACACACGT
ACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9469:864..1266+

>mRNA_L-elsbetiae_contig9469.18455.1 ID=mRNA_L-elsbetiae_contig9469.18455.1|Name=mRNA_L-elsbetiae_contig9469.18455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig9469:864..1266+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGTGCCCAGGATAGATAGAAACACACCACCACTCGATCGACTACG
ACGAACGCCACTACCACTATACTACTGCTGTGTGTACCCTCACAAAGGTA
CTGTATACATACGTTTTTGGGAGATTGAAACAAGATATAGGTCGGGTGGA
GGAAGGCAGAGGGCACTGAAAGTCCGAGTGCATAAACTTGCATGTACCAT
GTGTAGTAATGGCGGCGACAAAACCGAAAGAGGCAGACGTGCCATGAAGT
CTATGCAGTATGTACGTACGTATACATACATACAATGCCTTGTTGTTTGG
ATCCAGATACATAGATCCCACACACCAAACGAAGGCAGACGTGCCATGTA
GATGCAAGTGCCCAGGATAGATAGAAACACACCACCACTCGATCGACTAC
GACGAACGCCACTACCACTATACTACTGCTGTGTGTACCCTCACAAAGGT
ACTGTATACATACGTTTTTGGGAGATTGAAACAAGATATAGGTCGGGTGG
AGGAAGGCAGAGGGCACTGAAAGTCCGAGTGCATAAACTTGCATGTACCA
TGTGTAGTAATGGCGGCGACAAAACCGAAAGAGGCAGACGTGCCATGAAG
TCTATGCAGTATGTACGTACGTATACATACATACAATGCCTTGTTGTTTG
GATCCAGATACATAGATCCCACACACCAAACGAAGGCAGACGTGCCATGT
AG
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