mRNA_L-elsbetiae_contig945.18442.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig945.18442.1
Unique NamemRNA_L-elsbetiae_contig945.18442.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig945.18442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig945contigL-elsbetiae_contig945:21888..22818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size579
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig945.18442.1prot_L-elsbetiae_contig945.18442.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig945 21888..22818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817012.8451579-CDS-L-elsbetiae_contig945:21887..222841622817012.8451579-CDS-L-elsbetiae_contig945:21887..22284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 21888..22284 +
1691683982.4249384-CDS-L-elsbetiae_contig945:21887..222841691683982.4249384-CDS-L-elsbetiae_contig945:21887..22284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 21888..22284 +
1622817012.8590722-CDS-L-elsbetiae_contig945:22518..226651622817012.8590722-CDS-L-elsbetiae_contig945:22518..22665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 22519..22665 +
1691683982.4425569-CDS-L-elsbetiae_contig945:22518..226651691683982.4425569-CDS-L-elsbetiae_contig945:22518..22665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 22519..22665 +
1622817012.8728795-CDS-L-elsbetiae_contig945:22783..228181622817012.8728795-CDS-L-elsbetiae_contig945:22783..22818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 22784..22818 +
1691683982.4569917-CDS-L-elsbetiae_contig945:22783..228181691683982.4569917-CDS-L-elsbetiae_contig945:22783..22818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 22784..22818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig945.18442.1

>prot_L-elsbetiae_contig945.18442.1 ID=prot_L-elsbetiae_contig945.18442.1|Name=mRNA_L-elsbetiae_contig945.18442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
MEDWRDKVEKFGEWKRQEEICASEINHWSGGHDTEHGEVRKDELTRWKGE
HDTARKELEGAKASMMSAKDRLDQRVLALTRESRDSKKRLNSEIAKLTQL
LSRKSREGTNQDGENAVVEPVVEEDDPHPKTCGTVEGTGNVGGGAVEKRG
GCDGEQPSPSSADGNVQREGNGDVEAAESGNGVATSEEHDGGE
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mRNA from alignment at L-elsbetiae_contig945:21888..22818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig945.18442.1 ID=mRNA_L-elsbetiae_contig945.18442.1|Name=mRNA_L-elsbetiae_contig945.18442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=931bp|location=Sequence derived from alignment at L-elsbetiae_contig945:21888..22818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGATTGGCGCGACAAAGTGGAGAAATTTGGAGAATGGAAAAGACA
AGAGGAAATCTGTGCCTCTGAGATCAATCATTGGAGTGGCGGGCATGATA
CAGAGCACGGCGAGGTGAGAAAGGATGAGCTAACTCGTTGGAAGGGCGAG
CATGATACAGCGCGGAAAGAGCTTGAAGGGGCGAAAGCATCCATGATGTC
TGCGAAGGATCGATTAGACCAACGCGTGCTTGCTCTTACTCGCGAGAGTC
GCGACTCGAAGAAGCGACTGAACAGCGAGATCGCCAAACTCACCCAGCTG
CTGAGCCGGAAGAGTCGCGAAGGTACCAACCAAGATGGCGAGAATGCTGT
GGTGGAGCCCGTAGTGGAGGAAGATGATCCCCACCCAAAAACTTGCGGTG
AGATTCCTTTATTCACCATACCTCACGTGTCGTTTTCCACCATTGAGATG
ATAGGAGGAGCGGGTGGGTGGTGACGCCCGTGAGCCGTACGGGAAAGCAG
AAAGAAACACACGAAATCTAGACGCCTTTGTGTCGCAGAGGCCGAGGCAT
GCTGCTGCTGTTGTTACTGGTTGTTCGCATTGTTCTCATTTGGCGATGAT
TTTATTCAACCACGTTGCTGCTCTTCCACAGGCACCGTTGAAGGCACGGG
CAACGTTGGTGGAGGCGCCGTGGAGAAGCGTGGTGGTTGCGACGGGGAGC
AGCCCTCTCCCTCGTCGGCAGATGGAAACGTGCAGAGGGAGGGAAACGGG
GACGTAGAGGCGGCGGAAAGCGGCAACGGTAAGCGTTCTTAGAATTTCTT
ACTTACTCGAAGTACGGTGCTAACTCGGGCCATGTGATGATTGTTGGTTG
TCTAACCACGTTGCCGCTCTTTTCACGGGCACCGTTCAAGACACAGGTGT
TGCTACCAGCGAGGAACATGATGGTGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig945:21888..22818+

>mRNA_L-elsbetiae_contig945.18442.1 ID=mRNA_L-elsbetiae_contig945.18442.1|Name=mRNA_L-elsbetiae_contig945.18442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig945:21888..22818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGATTGGCGCGACAAAGTGGAGAAATTTGGAGAATGGAAAAGACA
AGAGGAAATCTGTGCCTCTGAGATCAATCATTGGAGTGGCGGGCATGATA
CAGAGCACGGCGAGGTGAGAAAGGATGAGCTAACTCGTTGGAAGGGCGAG
CATGATACAGCGCGGAAAGAGCTTGAAGGGGCGAAAGCATCCATGATGTC
TGCGAAGGATCGATTAGACCAACGCGTGCTTGCTCTTACTCGCGAGAGTC
GCGACTCGAAGAAGCGACTGAACAGCGAGATCGCCAAACTCACCCAGCTG
CTGAGCCGGAAGAGTCGCGAAGGTACCAACCAAGATGGCGAGAATGCTGT
GGTGGAGCCCGTAGTGGAGGAAGATGATCCCCACCCAAAAACTTGCGATG
GAGGATTGGCGCGACAAAGTGGAGAAATTTGGAGAATGGAAAAGACAAGA
GGAAATCTGTGCCTCTGAGATCAATCATTGGAGTGGCGGGCATGATACAG
AGCACGGCGAGGTGAGAAAGGATGAGCTAACTCGTTGGAAGGGCGAGCAT
GATACAGCGCGGAAAGAGCTTGAAGGGGCGAAAGCATCCATGATGTCTGC
GAAGGATCGATTAGACCAACGCGTGCTTGCTCTTACTCGCGAGAGTCGCG
ACTCGAAGAAGCGACTGAACAGCGAGATCGCCAAACTCACCCAGCTGCTG
AGCCGGAAGAGTCGCGAAGGTACCAACCAAGATGGCGAGAATGCTGTGGT
GGAGCCCGTAGTGGAGGAAGATGATCCCCACCCAAAAACTTGCGGCACCG
TTGAAGGCACGGGCAACGTTGGTGGAGGCGCCGTGGAGAAGCGTGGTGGT
TGCGACGGGGAGCAGCCCTCTCCCTCGTCGGCAGATGGAAACGTGCAGAG
GGAGGGAAACGGGGACGTAGAGGCGGCGGAAAGCGGCAACGGCACCGTTG
AAGGCACGGGCAACGTTGGTGGAGGCGCCGTGGAGAAGCGTGGTGGTTGC
GACGGGGAGCAGCCCTCTCCCTCGTCGGCAGATGGAAACGTGCAGAGGGA
GGGAAACGGGGACGTAGAGGCGGCGGAAAGCGGCAACGGTGTTGCTACCA
GCGAGGAACATGATGGTGGCGAGGTGTTGCTACCAGCGAGGAACATGATG
GTGGCGAG
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