mRNA_L-elsbetiae_contig945.18439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig945.18439.1
Unique NamemRNA_L-elsbetiae_contig945.18439.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig945.18439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig945contigL-elsbetiae_contig945:10575..11143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size569
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817012.9128435-UTR-L-elsbetiae_contig945:10574..108131622817012.9128435-UTR-L-elsbetiae_contig945:10574..10813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 10575..10813 +
1691683982.475636-UTR-L-elsbetiae_contig945:10574..108131691683982.475636-UTR-L-elsbetiae_contig945:10574..10813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig945 10575..10813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817012.9291868-CDS-L-elsbetiae_contig945:10813..111431622817012.9291868-CDS-L-elsbetiae_contig945:10813..11143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 10814..11143 +
1691683982.4870746-CDS-L-elsbetiae_contig945:10813..111431691683982.4870746-CDS-L-elsbetiae_contig945:10813..11143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig945 10814..11143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig945.18439.1prot_L-elsbetiae_contig945.18439.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig945 10814..11143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig945.18439.1

>prot_L-elsbetiae_contig945.18439.1 ID=prot_L-elsbetiae_contig945.18439.1|Name=mRNA_L-elsbetiae_contig945.18439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MPLASEAAWVLNHPNNNNSDEPFSTKSSKHKHGRASTGDAATVRGHNKLI
GDAATIRGRVGVGWSEQPQLGQAIFDQIIKTKTRQSVDRRCRCYNPRPRG
RWVVRTTTT*
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mRNA from alignment at L-elsbetiae_contig945:10575..11143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig945.18439.1 ID=mRNA_L-elsbetiae_contig945.18439.1|Name=mRNA_L-elsbetiae_contig945.18439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig945:10575..11143+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTTGACCAAATCATTAAGAACAAAATACGAAGAGCGTCGACAGGCGAT
GCCGCCACAGTCCGAGGCCACAACAAGTTGATGGGCGATGCCGCTACAAT
CCGAGGCCGCGTGGGCGTATGATCGTCCGAACAACAACAACTTGACCAGA
CGTATTGACCTAATCATAATTGTGAATTTACAAAATAGCGCAGACAGGCG
ATGCCGCCACAGCCCGAGGCAACACCAAGTTGATAGGCGATGCCGCTAGC
GTCGGAGGCCGCGTGGGTGTTGAATCATCCGAACAACAACAATTCGGACG
AGCCGTTTTCGACCAAATCATCAAAACACAAACACGGAAGAGCGTCGACA
GGCGATGCCGCCACAGTCCGAGGCCACAACAAGTTGATAGGCGATGCCGC
TACAATCCGAGGCCGCGTGGGTGTTGGATGGTCCGAACAACCACAACTTG
GACAAGCAATTTTTGACCAAATCATCAAAACAAAAACACGACAAAGCGTC
GACAGGCGATGCCGCTGCTACAATCCAAGGCCGCGTGGGCGTTGGGTCGT
CCGAACAACAACAACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig945:10575..11143+

>mRNA_L-elsbetiae_contig945.18439.1 ID=mRNA_L-elsbetiae_contig945.18439.1|Name=mRNA_L-elsbetiae_contig945.18439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig945:10575..11143+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCTAGCGTCGGAGGCCGCGTGGGTGTTGAATCATCCGAACAACAA
CAATTCGGACGAGCCGTTTTCGACCAAATCATCAAAACACAAACACGGAA
GAGCGTCGACAGGCGATGCCGCCACAGTCCGAGGCCACAACAAGTTGATA
GGCGATGCCGCTACAATCCGAGGCCGCGTGGGTGTTGGATGGTCCGAACA
ACCACAACTTGGACAAGCAATTTTTGACCAAATCATCAAAACAAAAACAC
GACAAAGCGTCGACAGGCGATGCCGCTGCTACAATCCAAGGCCGCGTGGG
CGTTGGGTCGTCCGAACAACAACAACTTGAATGCCGCTAGCGTCGGAGGC
CGCGTGGGTGTTGAATCATCCGAACAACAACAATTCGGACGAGCCGTTTT
CGACCAAATCATCAAAACACAAACACGGAAGAGCGTCGACAGGCGATGCC
GCCACAGTCCGAGGCCACAACAAGTTGATAGGCGATGCCGCTACAATCCG
AGGCCGCGTGGGTGTTGGATGGTCCGAACAACCACAACTTGGACAAGCAA
TTTTTGACCAAATCATCAAAACAAAAACACGACAAAGCGTCGACAGGCGA
TGCCGCTGCTACAATCCAAGGCCGCGTGGGCGTTGGGTCGTCCGAACAAC
AACAACTTGA
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