mRNA_L-elsbetiae_contig9439.18430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9439.18430.1
Unique NamemRNA_L-elsbetiae_contig9439.18430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9439.18430.1 vs. uniprot
Match: D7FKG0_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.330e-27
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 DPETAADNLFDDNVETYFSVNRDSTYFILELEAETEIHGVSLGFFMKDESEGRIQTFSVAVRANNEIEYTTKIGDKTSSGTMGDTQCFPFTSPATAQYIRIQSDGN 318
            DP T+  NLFD +++TYFS+NR+ST  I+ELE E E+ G+S+ FFMKD SE R+QTFSV+VRA ++ EYTT I D+TSSG     Q F FT   T +YI++ ++GN
Sbjct:  479 DPSTSPSNLFDGDIDTYFSINRESTSMIMELEVEQEVDGISISFFMKDPSEDRVQTFSVSVRAADDTEYTTVISDRTSSGEKDVHQHFTFTG-TTTKYIKLTTNGN 583
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BLAST of mRNA_L-elsbetiae_contig9439.18430.1 vs. uniprot
Match: A0A6H5KWV6_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.580e-25
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 DPETAADNLFDDNVETYFSVNRDSTYFILELEAETEIHGVSLGFFMKDESEGRIQTFSVAVRANNEIEYTTKIGDKTSSGTMGDTQCFPFTSPATAQYIRIQSDGN 318
            D  T+ +NLFD NV++Y+SV+R+STY ILELE E E++GV++GFFMK   E RIQTF VAVR+ N+ ++TT I  K SSG M   Q FPF+S  TA Y+R ++ GN
Sbjct:  401 DESTSVENLFDGNVDSYYSVHRESTYIILELEDEVEVNGVAIGFFMKAAEEERIQTFDVAVRSANDEDWTTVISRKESSGEM-TIQTFPFSS-RTALYVRFETHGN 504
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BLAST of mRNA_L-elsbetiae_contig9439.18430.1 vs. uniprot
Match: D7FRK8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK8_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.560e-22
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 DPETAADNLFDDNVETYFSVNRDSTYFILELEAETEIHGVSLGFFMKDESEGRIQTFSVAVRANNEIEYTTKIGDKTSSGTMGDTQCFPFTSPATAQYIRIQSDGN 318
            D  T+ +NLFD +V++Y+S++R+STY  LELE E +++GV++GFFMK   E RIQTF VAVR+ ++ ++TT I  K SSG M   Q FPF+S   A Y+R ++ GN
Sbjct:  442 DGSTSVENLFDSDVDSYYSIHRESTYITLELEDEVDVNGVAIGFFMKAAEEERIQTFDVAVRSADDDDWTTVISRKESSGEM-TVQTFPFSSRP-ALYVRFETHGN 545
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BLAST of mRNA_L-elsbetiae_contig9439.18430.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.430e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   22 NLFDDNVETYFSVNRDSTYFILELEAETEIHGVSLGFFMKDESEGRIQTFSVAVRANNEIEYTTKIGDKTSSGTMGDTQCFPFTSPATAQYIRIQSDG 315
            NL D   ETYFSV+R+ T   LEL+ ETE++GV++GFFMK     RIQ F ++V      ++ T I  K SSG MGD Q F F+S   A Y+R+++ G
Sbjct:  427 NLLDGTTETYFSVHREGTAITLELQEETEVNGVAIGFFMKAAEAERIQVFDISVMEEGGDDWKTVISRKESSGAMGDVQTFSFSSRK-ALYVRLETHG 523
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9439.18430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKG0_ECTSI1.330e-2754.72FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KWV6_9PHAE2.580e-2555.66F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
D7FRK8_ECTSI4.560e-2250.00FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KRG5_9PHAE2.430e-1746.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9439contigL-elsbetiae_contig9439:472..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817011.8142936-CDS-L-elsbetiae_contig9439:471..7891622817011.8142936-CDS-L-elsbetiae_contig9439:471..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9439 472..789 -
1691683981.6359096-CDS-L-elsbetiae_contig9439:471..7891691683981.6359096-CDS-L-elsbetiae_contig9439:471..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9439 472..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9439.18430.1prot_L-elsbetiae_contig9439.18430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9439 472..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9439.18430.1

>prot_L-elsbetiae_contig9439.18430.1 ID=prot_L-elsbetiae_contig9439.18430.1|Name=mRNA_L-elsbetiae_contig9439.18430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
DPETAADNLFDDNVETYFSVNRDSTYFILELEAETEIHGVSLGFFMKDES
EGRIQTFSVAVRANNEIEYTTKIGDKTSSGTMGDTQCFPFTSPATAQYIR
IQSDGN
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mRNA from alignment at L-elsbetiae_contig9439:472..789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9439.18430.1 ID=mRNA_L-elsbetiae_contig9439.18430.1|Name=mRNA_L-elsbetiae_contig9439.18430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig9439:472..789- (Laminarionema elsbetiae ELsaHSoW15)
GATCCGGAAACGGCCGCGGACAACCTGTTCGACGACAACGTGGAGACGTA
CTTCTCCGTGAACCGCGACAGCACCTACTTTATCCTGGAGCTGGAGGCTG
AGACGGAGATCCACGGCGTCTCGCTCGGCTTCTTTATGAAAGACGAATCC
GAGGGGCGGATCCAGACCTTCAGCGTGGCCGTGCGCGCGAACAACGAGAT
CGAGTACACCACCAAGATCGGCGACAAGACGTCCTCGGGGACGATGGGCG
ACACACAGTGCTTCCCGTTCACCTCGCCCGCCACGGCGCAGTATATTAGG
ATCCAGAGCGACGGAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9439:472..789-

>mRNA_L-elsbetiae_contig9439.18430.1 ID=mRNA_L-elsbetiae_contig9439.18430.1|Name=mRNA_L-elsbetiae_contig9439.18430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9439:472..789- (Laminarionema elsbetiae ELsaHSoW15)
GATCCGGAAACGGCCGCGGACAACCTGTTCGACGACAACGTGGAGACGTA
CTTCTCCGTGAACCGCGACAGCACCTACTTTATCCTGGAGCTGGAGGCTG
AGACGGAGATCCACGGCGTCTCGCTCGGCTTCTTTATGAAAGACGAATCC
GAGGGGCGGATCCAGACCTTCAGCGTGGCCGTGCGCGCGAACAACGAGAT
CGAGTACACCACCAAGATCGGCGACAAGACGTCCTCGGGGACGATGGGCG
ACACACAGTGCTTCCCGTTCACCTCGCCCGCCACGGCGCAGTATATTAGG
ATCCAGAGCGACGGAAACGATCCGGAAACGGCCGCGGACAACCTGTTCGA
CGACAACGTGGAGACGTACTTCTCCGTGAACCGCGACAGCACCTACTTTA
TCCTGGAGCTGGAGGCTGAGACGGAGATCCACGGCGTCTCGCTCGGCTTC
TTTATGAAAGACGAATCCGAGGGGCGGATCCAGACCTTCAGCGTGGCCGT
GCGCGCGAACAACGAGATCGAGTACACCACCAAGATCGGCGACAAGACGT
CCTCGGGGACGATGGGCGACACACAGTGCTTCCCGTTCACCTCGCCCGCC
ACGGCGCAGTATATTAGGATCCAGAGCGACGGAAAC
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